Wall clock time and date at job start Mon Mar 30 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47484 * 2 1 4 4 C 1.50709 * 109.47239 * 119.99880 * 2 1 3 5 5 C 1.38232 * 119.99864 * 119.99517 * 4 2 1 6 6 C 1.38232 * 119.99543 * 180.02562 * 5 4 2 7 7 C 1.38235 * 120.00584 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00301 * 179.97438 * 7 6 5 9 9 H 1.08997 * 115.55200 * 25.67059 * 8 7 6 10 10 C 1.53079 * 117.51344 * 171.39439 * 8 7 6 11 11 C 1.52995 * 59.98361 * 107.47301 * 10 8 7 12 12 H 1.09004 * 117.49801 * 252.49210 * 11 10 8 13 13 C 1.50706 * 117.49405 * 107.50487 * 11 10 8 14 14 O 1.21292 * 119.99870 * 291.24589 * 13 11 10 15 15 N 1.34777 * 120.00150 * 111.25301 * 13 11 10 16 16 C 1.37095 * 119.99970 * 179.97438 * 15 13 11 17 17 H 1.08004 * 120.00455 * 359.97438 * 16 15 13 18 18 C 1.38947 * 120.00240 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00367 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99822 * 0.26929 * 18 16 15 21 21 H 1.48500 * 109.47088 * 269.73243 * 20 18 16 22 22 H 1.48505 * 109.47152 * 29.72720 * 20 18 16 23 23 H 1.48494 * 109.47142 * 149.72720 * 20 18 16 24 24 C 1.38246 * 119.99610 * 0.25105 * 7 6 5 25 25 C 1.38230 * 119.99726 * 359.49509 * 24 7 6 26 26 H 1.09004 * 109.46993 * 59.99810 * 1 2 3 27 27 H 1.08997 * 109.47570 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 300.00590 * 1 2 3 29 29 H 1.08998 * 109.47775 * 240.00104 * 2 1 3 30 30 H 1.08997 * 109.47633 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46910 * 299.99990 * 3 2 1 32 32 H 1.09005 * 109.46745 * 59.99654 * 3 2 1 33 33 H 1.07998 * 120.00250 * 0.02562 * 5 4 2 34 34 H 1.08004 * 119.99896 * 179.97438 * 6 5 4 35 35 H 1.09001 * 117.49087 * 359.97438 * 10 8 7 36 36 H 1.09003 * 117.51048 * 214.95780 * 10 8 7 37 37 H 0.96999 * 120.00043 * 359.97438 * 15 13 11 38 38 H 0.97005 * 120.00032 * 179.97438 * 19 18 16 39 39 H 1.07991 * 119.99798 * 179.72900 * 24 7 6 40 40 H 1.07997 * 119.99936 * 180.23051 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8344 1.1037 6 6 3.2873 -2.4862 2.2324 7 6 2.9526 -2.0145 3.4879 8 6 3.4540 -2.7256 4.7184 9 1 4.3763 -3.2922 4.5909 10 6 3.2220 -2.0473 6.0709 11 6 2.4092 -3.2850 5.6860 12 1 1.3591 -3.1388 5.4326 13 6 2.7341 -4.5773 6.3899 14 8 3.7907 -5.1341 6.1784 15 7 1.8505 -5.1145 7.2544 16 6 2.1459 -6.2904 7.8943 17 1 3.0864 -6.7866 7.7055 18 6 1.2348 -6.8445 8.7851 19 7 1.5177 -7.9719 9.3982 20 14 -0.3958 -5.9910 9.1051 21 1 -0.2456 -5.0465 10.2411 22 1 -0.8096 -5.2429 7.8908 23 1 -1.4284 -7.0051 9.4375 24 6 2.1532 -0.8938 3.6147 25 6 1.6972 -0.2389 2.4861 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.0881 -2.2032 0.1228 34 1 3.9078 -3.3646 2.1334 35 1 2.7070 -1.0866 6.0703 36 1 3.9918 -2.1677 6.8332 37 1 1.0056 -4.6691 7.4237 38 1 0.8818 -8.3585 10.0204 39 1 1.8881 -0.5279 4.5956 40 1 1.0757 0.6388 2.5851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:23 Heat of formation + Delta-G solvation = -22.750764 kcal Electronic energy + Delta-G solvation = -19893.898074 eV Core-core repulsion = 16865.749237 eV Total energy + Delta-G solvation = -3028.148837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14232 -40.19523 -37.90037 -36.09914 -35.53963 -33.78322 -31.78938 -30.58106 -27.92687 -27.70265 -25.00077 -24.39118 -23.67518 -21.82827 -21.21215 -20.66088 -20.02208 -18.35365 -17.26946 -16.95802 -16.34633 -15.91653 -15.68080 -15.60370 -15.06685 -14.85102 -14.70396 -14.43810 -14.30061 -14.15713 -13.79975 -13.43236 -13.14086 -13.02875 -12.93670 -12.52825 -12.46740 -12.21833 -12.04410 -12.00224 -11.66390 -11.58944 -11.52493 -11.37628 -11.29962 -10.54527 -10.30985 -9.78176 -9.27898 -8.46292 -6.07790 0.38483 0.54283 1.28303 1.32031 1.42543 1.76221 2.19689 2.61590 2.84046 3.03050 3.23983 3.66823 3.79210 3.84379 3.93562 4.01265 4.13297 4.20623 4.33181 4.36551 4.37796 4.56141 4.60574 4.71481 4.77457 4.86148 4.98447 5.01218 5.04417 5.10667 5.14066 5.23667 5.26791 5.39259 5.44049 5.50279 5.59700 5.77129 5.79682 5.89063 6.14795 6.52565 6.80528 7.32980 7.88481 8.71163 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029030 B = 0.003426 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.298617 B = 8169.882697 C = 8578.191051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.064 4.064 8 C -0.089 4.089 9 H 0.095 0.905 10 C -0.127 4.127 11 C -0.170 4.170 12 H 0.140 0.860 13 C 0.474 3.526 14 O -0.629 6.629 15 N -0.581 5.581 16 C -0.334 4.334 17 H 0.055 0.945 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.253 1.253 22 H -0.234 1.234 23 H -0.271 1.271 24 C -0.119 4.119 25 C -0.113 4.113 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.391 0.609 38 H 0.281 0.719 39 H 0.142 0.858 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 22.912 -17.026 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.085 4.085 5 C -0.141 4.141 6 C -0.144 4.144 7 C -0.064 4.064 8 C -0.108 4.108 9 H 0.113 0.887 10 C -0.164 4.164 11 C -0.192 4.192 12 H 0.158 0.842 13 C 0.263 3.737 14 O -0.516 6.516 15 N -0.221 5.221 16 C -0.463 4.463 17 H 0.073 0.927 18 C -0.211 4.211 19 N -0.570 5.570 20 Si 0.784 3.216 21 H -0.177 1.177 22 H -0.158 1.158 23 H -0.196 1.196 24 C -0.137 4.137 25 C -0.131 4.131 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.411 22.352 -17.012 28.606 hybrid contribution -0.333 -0.853 0.661 1.130 sum -5.743 21.499 -16.351 27.614 Atomic orbital electron populations 1.21852 0.93739 1.01758 1.02672 1.20161 0.96367 0.96385 0.94484 1.21842 1.00868 0.94514 1.02655 1.20151 0.97171 0.95461 0.95708 1.21214 0.98436 0.95945 0.98478 1.21112 1.00836 1.00047 0.92452 1.19117 0.98726 0.96091 0.92431 1.20936 0.98720 1.01548 0.89556 0.88682 1.23244 1.01281 0.95366 0.96490 1.22193 0.99645 0.92629 1.04694 0.84199 1.20002 0.84299 0.87424 0.81967 1.90519 1.27600 1.65531 1.67902 1.41971 1.18502 1.21948 1.39638 1.19042 1.04841 0.99822 1.22608 0.92656 1.26134 1.03209 0.96602 0.95173 1.69799 1.38680 1.20051 1.28499 0.85368 0.76615 0.79034 0.80566 1.17732 1.15793 1.19623 1.21253 0.97395 0.94884 1.00129 1.21172 1.00145 1.00396 0.91405 0.91149 0.93418 0.92121 0.90226 0.93141 0.91201 0.92118 0.84820 0.86782 0.83940 0.89037 0.77325 0.90926 0.84025 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.01 71.98 0.65 -1.05 16 2 C -0.06 -0.74 3.09 -11.54 -0.04 -0.77 16 3 C -0.14 -1.57 9.01 71.98 0.65 -0.92 16 4 C -0.08 -1.55 4.78 -19.86 -0.09 -1.64 16 5 C -0.12 -2.59 9.67 22.27 0.22 -2.38 16 6 C -0.13 -3.25 9.74 22.27 0.22 -3.03 16 7 C -0.06 -1.66 5.61 -19.86 -0.11 -1.77 16 8 C -0.09 -2.76 5.56 -11.52 -0.06 -2.83 16 9 H 0.09 3.51 7.67 -2.39 -0.02 3.49 16 10 C -0.13 -3.42 9.57 30.62 0.29 -3.12 16 11 C -0.17 -5.77 5.82 -11.54 -0.07 -5.84 16 12 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 13 C 0.47 22.88 7.57 87.66 0.66 23.55 16 14 O -0.63 -36.74 15.83 -3.07 -0.05 -36.79 16 15 N -0.58 -28.84 5.09 -306.98 -1.56 -30.41 16 16 C -0.33 -20.15 10.16 84.04 0.85 -19.29 16 17 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.93 -56.63 13.96 21.66 0.30 -56.33 16 20 Si 0.96 39.40 27.74 68.60 1.90 41.31 16 21 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 22 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 C -0.12 -2.46 9.29 22.27 0.21 -2.25 16 25 C -0.11 -2.03 8.71 22.27 0.19 -1.83 16 26 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.68 7.39 -2.39 -0.02 0.66 16 29 H 0.08 1.00 7.88 -2.39 -0.02 0.98 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.63 7.39 -2.38 -0.02 0.62 16 33 H 0.13 2.31 7.95 -2.91 -0.02 2.28 16 34 H 0.11 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.14 2.63 6.19 -2.39 -0.01 2.61 16 36 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.39 16.18 5.76 -92.71 -0.53 15.64 16 38 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.14 2.31 6.03 -2.91 -0.02 2.30 16 40 H 0.14 1.84 7.10 -2.91 -0.02 1.82 16 Total: -1.00 -76.29 332.39 5.08 -71.21 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.45 Total: 34.40 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.03 Total: -23.39 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -1.26 Total: -86.74 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.05 Total: -36.79 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.90 Total: 41.31 kcal Total: -76.29 5.08 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.463 kcal (2) G-P(sol) polarization free energy of solvation -76.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds