Wall clock time and date at job start Mon Mar 30 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 C 1.50698 * 109.47360 * 120.00260 * 2 1 3 5 5 C 1.38237 * 120.00296 * 119.99835 * 4 2 1 6 6 C 1.38230 * 120.00112 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99873 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99900 * 179.97438 * 7 6 5 9 9 H 1.09002 * 115.55051 * 25.67214 * 8 7 6 10 10 C 1.52992 * 117.49981 * 171.38236 * 8 7 6 11 11 C 1.52992 * 60.00324 * 107.49330 * 10 8 7 12 12 H 1.09000 * 117.52275 * 107.48597 * 11 10 8 13 13 C 1.50700 * 117.49434 * 252.51283 * 11 10 8 14 14 O 1.21293 * 120.00282 * 68.61891 * 13 11 10 15 15 N 1.34777 * 120.00075 * 248.61789 * 13 11 10 16 16 C 1.37104 * 120.00173 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99666 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00001 * 180.27893 * 16 15 13 19 19 N 1.31414 * 119.99893 * 359.72318 * 18 16 15 20 20 Si 1.86801 * 119.99957 * 179.72309 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99808 * 20 18 16 22 22 H 1.48504 * 109.46757 * 209.99794 * 20 18 16 23 23 H 1.48492 * 109.47185 * 329.99590 * 20 18 16 24 24 C 1.38233 * 120.00078 * 0.25812 * 7 6 5 25 25 C 1.38235 * 119.99989 * 359.46216 * 24 7 6 26 26 H 1.08994 * 109.46869 * 59.99633 * 1 2 3 27 27 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46929 * 299.99709 * 1 2 3 29 29 H 1.09002 * 109.46929 * 240.00291 * 2 1 3 30 30 H 1.09000 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47633 * 299.99899 * 3 2 1 32 32 H 1.09002 * 109.47065 * 60.00374 * 3 2 1 33 33 H 1.08004 * 119.99390 * 359.97438 * 5 4 2 34 34 H 1.07992 * 119.99861 * 179.97438 * 6 5 4 35 35 H 1.09001 * 117.49960 * 359.97438 * 10 8 7 36 36 H 1.09004 * 117.49584 * 214.98140 * 10 8 7 37 37 H 0.97000 * 120.00140 * 0.02562 * 15 13 11 38 38 H 0.97004 * 119.99542 * 180.02562 * 19 18 16 39 39 H 1.08005 * 119.99969 * 179.72973 * 24 7 6 40 40 H 1.07998 * 119.99725 * 180.29733 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8272 -1.8344 1.1036 6 6 3.2884 -2.4857 2.2322 7 6 2.9545 -2.0134 3.4877 8 6 3.4568 -2.7238 4.7182 9 1 4.3792 -3.2904 4.5903 10 6 3.2259 -2.0450 6.0696 11 6 2.4129 -3.2832 5.6868 12 1 2.6484 -4.2176 6.1961 13 6 0.9609 -3.0814 5.3374 14 8 0.6578 -2.4941 4.3203 15 7 -0.0009 -3.5536 6.1550 16 6 -1.3219 -3.3705 5.8369 17 1 -1.5917 -2.8475 4.9313 18 6 -2.3134 -3.8521 6.6828 19 7 -1.9850 -4.4880 7.7850 20 14 -4.1132 -3.5959 6.2532 21 1 -4.5962 -4.7416 5.4411 22 1 -4.9116 -3.5027 7.5018 23 1 -4.2624 -2.3399 5.4753 24 6 2.1549 -0.8929 3.6146 25 6 1.6984 -0.2382 2.4859 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0877 -2.2035 0.1226 34 1 3.9089 -3.3640 2.1330 35 1 2.7110 -1.0843 6.0688 36 1 3.9966 -2.1646 6.8312 37 1 0.2415 -4.0229 6.9686 38 1 -2.6772 -4.8245 8.3753 39 1 1.8904 -0.5265 4.5955 40 1 1.0777 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:30 Heat of formation + Delta-G solvation = 2.821102 kcal Electronic energy + Delta-G solvation = -20836.603895 eV Core-core repulsion = 17809.563937 eV Total energy + Delta-G solvation = -3027.039958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75431 -38.24764 -36.18579 -34.43906 -33.77557 -31.20081 -30.27877 -29.15738 -27.00345 -25.59869 -23.63532 -22.86569 -22.38728 -20.57919 -19.49956 -18.77383 -17.76293 -16.79180 -15.54518 -15.09898 -14.68339 -14.46545 -14.17544 -13.89322 -13.56348 -13.42211 -13.33258 -12.96561 -12.85254 -12.44898 -12.23286 -11.98176 -11.68878 -11.44587 -11.24778 -11.11703 -11.04497 -10.91292 -10.40321 -10.33592 -10.31675 -10.21493 -10.01597 -9.95570 -9.45885 -8.62987 -8.13621 -7.90854 -7.35409 -6.41774 -3.81188 1.91776 2.12498 3.16260 3.25908 3.31685 3.63631 4.15999 4.29667 4.57980 4.81700 4.93643 5.02970 5.11596 5.26637 5.36743 5.42081 5.47133 5.55977 5.58047 5.64768 5.71397 5.73426 5.86425 5.94936 5.97145 6.03822 6.09225 6.14764 6.20651 6.34040 6.42189 6.48704 6.50319 6.64924 6.69846 7.04937 7.19479 7.30691 7.55129 7.65694 8.07040 8.63050 9.18700 9.57031 10.09790 10.75886 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.005469 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.527827 B = 5118.125418 C = 6407.230960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.136 4.136 6 C -0.114 4.114 7 C -0.037 4.037 8 C -0.092 4.092 9 H 0.110 0.890 10 C -0.158 4.158 11 C -0.160 4.160 12 H 0.112 0.888 13 C 0.461 3.539 14 O -0.571 6.571 15 N -0.557 5.557 16 C -0.296 4.296 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.928 3.072 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C -0.030 4.030 25 C -0.125 4.125 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.111 0.889 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.122 6.391 -8.331 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 C -0.199 4.199 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.133 4.133 7 C -0.037 4.037 8 C -0.111 4.111 9 H 0.128 0.872 10 C -0.196 4.196 11 C -0.182 4.182 12 H 0.130 0.870 13 C 0.247 3.753 14 O -0.455 6.455 15 N -0.192 5.192 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.756 3.244 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.048 4.048 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.755 6.694 -8.849 14.774 hybrid contribution -0.948 -0.551 0.557 1.230 sum 8.807 6.143 -8.292 13.567 Atomic orbital electron populations 1.21840 0.94584 1.02205 1.01397 1.20052 0.95826 0.95603 0.95642 1.21840 1.00903 0.95623 1.01512 1.19600 0.98367 0.96109 0.94153 1.20692 1.00439 0.96646 0.97609 1.20661 1.01239 0.99353 0.92008 1.18741 0.97702 0.94881 0.92374 1.20978 0.98678 1.02312 0.89123 0.87249 1.23042 1.02153 0.96985 0.97414 1.22303 0.93099 0.98739 1.04029 0.87046 1.19039 0.85215 0.85083 0.85930 1.90582 1.82264 1.45871 1.26831 1.41887 1.05558 1.49819 1.21906 1.19705 0.80813 1.34353 1.07738 0.87934 1.25255 1.00514 0.96755 0.95390 1.69621 1.34530 1.37838 1.12194 0.85881 0.81861 0.78957 0.77746 1.20408 1.20919 1.19451 1.20641 0.92878 0.93386 0.97872 1.20664 1.01111 1.00553 0.91971 0.93060 0.92430 0.92362 0.91189 0.92802 0.92952 0.92483 0.87351 0.87260 0.88255 0.88372 0.77493 0.91885 0.87095 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.01 37.16 0.33 -1.54 16 2 C -0.05 -0.68 3.09 -91.77 -0.28 -0.97 16 3 C -0.14 -1.57 9.01 37.16 0.33 -1.24 16 4 C -0.08 -1.31 4.78 -104.62 -0.50 -1.81 16 5 C -0.14 -2.16 9.67 -39.58 -0.38 -2.54 16 6 C -0.11 -1.91 9.74 -39.58 -0.39 -2.29 16 7 C -0.04 -0.66 4.38 -104.62 -0.46 -1.12 16 8 C -0.09 -1.48 6.04 -91.78 -0.55 -2.03 16 9 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 10 C -0.16 -2.39 9.57 -26.74 -0.26 -2.65 16 11 C -0.16 -2.89 6.19 -91.78 -0.57 -3.45 16 12 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 13 C 0.46 10.80 7.42 -10.98 -0.08 10.72 16 14 O -0.57 -14.66 11.25 5.55 0.06 -14.59 16 15 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 16 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 20 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.03 -0.55 6.16 -39.58 -0.24 -0.80 16 25 C -0.12 -2.18 8.71 -39.58 -0.34 -2.52 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.81 7.39 -51.93 -0.38 0.42 16 29 H 0.07 0.83 7.88 -51.93 -0.41 0.43 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.65 7.39 -51.93 -0.38 0.26 16 33 H 0.11 1.46 7.95 -52.48 -0.42 1.05 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.10 1.59 6.18 -51.93 -0.32 1.27 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.11 2.13 5.77 -52.48 -0.30 1.82 16 40 H 0.11 1.76 7.10 -52.49 -0.37 1.39 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -30.18 327.48 -8.80 -38.98 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.80 Total: 12.82 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.63 Total: -20.15 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.67 Total: -38.17 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.06 Total: -14.59 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.18 -8.80 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.799 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds