Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46953 * 2 1 4 4 C 1.50698 * 109.47360 * 120.00260 * 2 1 3 5 5 C 1.38237 * 120.00296 * 119.99835 * 4 2 1 6 6 C 1.38230 * 120.00112 * 179.97438 * 5 4 2 7 7 C 1.38237 * 119.99873 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99900 * 179.97438 * 7 6 5 9 9 H 1.09002 * 115.55051 * 25.67214 * 8 7 6 10 10 C 1.52992 * 117.49981 * 171.38236 * 8 7 6 11 11 C 1.52992 * 60.00324 * 107.49330 * 10 8 7 12 12 H 1.09000 * 117.52275 * 107.48597 * 11 10 8 13 13 C 1.50700 * 117.49434 * 252.51283 * 11 10 8 14 14 O 1.21293 * 120.00282 * 68.61891 * 13 11 10 15 15 N 1.34777 * 120.00075 * 248.61789 * 13 11 10 16 16 C 1.37104 * 120.00173 * 180.02562 * 15 13 11 17 17 H 1.08002 * 119.99666 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00001 * 180.27893 * 16 15 13 19 19 N 1.31414 * 119.99893 * 359.72318 * 18 16 15 20 20 Si 1.86801 * 119.99957 * 179.72309 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99808 * 20 18 16 22 22 H 1.48504 * 109.46757 * 209.99794 * 20 18 16 23 23 H 1.48492 * 109.47185 * 329.99590 * 20 18 16 24 24 C 1.38233 * 120.00078 * 0.25812 * 7 6 5 25 25 C 1.38235 * 119.99989 * 359.46216 * 24 7 6 26 26 H 1.08994 * 109.46869 * 59.99633 * 1 2 3 27 27 H 1.08994 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46929 * 299.99709 * 1 2 3 29 29 H 1.09002 * 109.46929 * 240.00291 * 2 1 3 30 30 H 1.09000 * 109.46925 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47633 * 299.99899 * 3 2 1 32 32 H 1.09002 * 109.47065 * 60.00374 * 3 2 1 33 33 H 1.08004 * 119.99390 * 359.97438 * 5 4 2 34 34 H 1.07992 * 119.99861 * 179.97438 * 6 5 4 35 35 H 1.09001 * 117.49960 * 359.97438 * 10 8 7 36 36 H 1.09004 * 117.49584 * 214.98140 * 10 8 7 37 37 H 0.97000 * 120.00140 * 0.02562 * 15 13 11 38 38 H 0.97004 * 119.99542 * 180.02562 * 19 18 16 39 39 H 1.08005 * 119.99969 * 179.72973 * 24 7 6 40 40 H 1.07998 * 119.99725 * 180.29733 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8272 -1.8344 1.1036 6 6 3.2884 -2.4857 2.2322 7 6 2.9545 -2.0134 3.4877 8 6 3.4568 -2.7238 4.7182 9 1 4.3792 -3.2904 4.5903 10 6 3.2259 -2.0450 6.0696 11 6 2.4129 -3.2832 5.6868 12 1 2.6484 -4.2176 6.1961 13 6 0.9609 -3.0814 5.3374 14 8 0.6578 -2.4941 4.3203 15 7 -0.0009 -3.5536 6.1550 16 6 -1.3219 -3.3705 5.8369 17 1 -1.5917 -2.8475 4.9313 18 6 -2.3134 -3.8521 6.6828 19 7 -1.9850 -4.4880 7.7850 20 14 -4.1132 -3.5959 6.2532 21 1 -4.5962 -4.7416 5.4411 22 1 -4.9116 -3.5027 7.5018 23 1 -4.2624 -2.3399 5.4753 24 6 2.1549 -0.8929 3.6146 25 6 1.6984 -0.2382 2.4859 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.0877 -2.2035 0.1226 34 1 3.9089 -3.3640 2.1330 35 1 2.7110 -1.0843 6.0688 36 1 3.9966 -2.1646 6.8312 37 1 0.2415 -4.0229 6.9686 38 1 -2.6772 -4.8245 8.3753 39 1 1.8904 -0.5265 4.5955 40 1 1.0777 0.6400 2.5851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984945.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -13.147311 kcal Electronic energy + Delta-G solvation = -20837.296337 eV Core-core repulsion = 17809.563937 eV Total energy + Delta-G solvation = -3027.732400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19007 -39.75443 -37.67382 -35.79741 -35.57405 -33.20488 -31.59698 -30.41438 -27.97659 -27.52255 -24.92216 -24.40434 -23.74197 -21.79337 -20.84057 -20.40936 -19.69133 -18.31740 -17.07496 -16.41958 -16.40221 -15.82437 -15.66196 -15.61487 -14.95163 -14.87214 -14.50760 -14.40944 -14.09876 -13.91526 -13.60295 -13.32493 -13.08644 -12.97016 -12.86378 -12.42550 -12.40483 -12.18673 -12.11199 -12.02055 -11.60586 -11.47363 -11.43097 -11.26193 -11.20468 -10.31744 -9.98878 -9.42859 -8.81133 -8.46100 -5.93453 0.61339 0.79132 1.35158 1.38319 1.50883 1.98636 2.28061 2.81840 3.18066 3.18914 3.37377 3.82889 3.86217 3.98151 4.06633 4.14463 4.22591 4.29854 4.36676 4.43474 4.55410 4.60827 4.70096 4.79755 4.82211 4.90473 4.95775 4.99120 5.02805 5.12916 5.20217 5.33030 5.39050 5.40067 5.40916 5.44923 5.75076 5.91728 5.97088 6.02091 6.37252 6.62234 7.14577 7.60721 8.17734 8.71320 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.005469 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.527827 B = 5118.125418 C = 6407.230960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.086 4.086 5 C -0.143 4.143 6 C -0.123 4.123 7 C -0.059 4.059 8 C -0.084 4.084 9 H 0.146 0.854 10 C -0.139 4.139 11 C -0.181 4.181 12 H 0.135 0.865 13 C 0.460 3.540 14 O -0.597 6.597 15 N -0.573 5.573 16 C -0.326 4.326 17 H 0.077 0.923 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.989 3.011 21 H -0.272 1.272 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.053 4.053 25 C -0.142 4.142 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.393 0.607 38 H 0.276 0.724 39 H 0.093 0.907 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.354 6.231 -9.327 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.086 4.086 5 C -0.161 4.161 6 C -0.141 4.141 7 C -0.059 4.059 8 C -0.102 4.102 9 H 0.164 0.836 10 C -0.176 4.176 11 C -0.202 4.202 12 H 0.152 0.848 13 C 0.248 3.752 14 O -0.483 6.483 15 N -0.209 5.209 16 C -0.456 4.456 17 H 0.095 0.905 18 C -0.213 4.213 19 N -0.564 5.564 20 Si 0.813 3.187 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.071 4.071 25 C -0.160 4.160 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.227 0.773 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.008 6.536 -9.841 16.147 hybrid contribution -1.271 -0.440 0.779 1.555 sum 9.737 6.096 -9.061 14.631 Atomic orbital electron populations 1.21830 0.94959 1.01143 1.01964 1.20129 0.95437 0.96685 0.94772 1.21801 1.01133 0.94346 1.02150 1.19975 0.97786 0.96241 0.94628 1.21112 0.99842 0.96313 0.98816 1.21042 1.01270 1.00012 0.91732 1.19044 0.98029 0.94909 0.93901 1.21213 0.98653 1.01823 0.88502 0.83634 1.23168 1.01489 0.94751 0.98188 1.22224 0.89698 1.01275 1.06988 0.84756 1.20043 0.87293 0.83049 0.84853 1.90578 1.83525 1.46373 1.27816 1.41967 1.05293 1.51076 1.22585 1.19616 0.82649 1.35674 1.07637 0.90508 1.25987 1.04070 0.96148 0.95119 1.69684 1.35808 1.38181 1.12691 0.84984 0.77182 0.78617 0.77900 1.19733 1.19480 1.19936 1.20680 0.94285 0.94706 0.97470 1.20830 1.01543 1.00940 0.92723 0.90419 0.94270 0.93875 0.89462 0.92388 0.90808 0.93369 0.84658 0.84842 0.89881 0.84339 0.77341 0.91420 0.88929 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.01 71.98 0.65 -2.98 16 2 C -0.05 -1.27 3.09 -11.54 -0.04 -1.31 16 3 C -0.14 -2.81 9.01 71.98 0.65 -2.16 16 4 C -0.09 -2.71 4.78 -19.87 -0.09 -2.80 16 5 C -0.14 -4.33 9.67 22.27 0.22 -4.11 16 6 C -0.12 -3.89 9.74 22.27 0.22 -3.68 16 7 C -0.06 -2.07 4.38 -19.87 -0.09 -2.15 16 8 C -0.08 -2.51 6.04 -11.54 -0.07 -2.58 16 9 H 0.15 3.29 8.14 -2.39 -0.02 3.28 16 10 C -0.14 -3.95 9.57 30.59 0.29 -3.66 16 11 C -0.18 -6.32 6.19 -11.54 -0.07 -6.39 16 12 H 0.13 4.06 8.14 -2.39 -0.02 4.04 16 13 C 0.46 22.03 7.42 87.66 0.65 22.68 16 14 O -0.60 -31.82 11.25 -3.07 -0.03 -31.86 16 15 N -0.57 -30.09 5.29 -306.98 -1.62 -31.71 16 16 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 17 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 18 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 19 N -0.92 -50.89 13.05 21.66 0.28 -50.60 16 20 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C -0.05 -2.05 6.16 22.27 0.14 -1.92 16 25 C -0.14 -5.11 8.71 22.27 0.19 -4.92 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.04 1.21 7.39 -2.39 -0.02 1.19 16 29 H 0.09 1.85 7.88 -2.39 -0.02 1.83 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.06 7.39 -2.39 -0.02 1.04 16 33 H 0.14 3.28 7.95 -2.91 -0.02 3.25 16 34 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 35 H 0.08 2.66 6.18 -2.39 -0.01 2.65 16 36 H 0.14 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.39 19.92 7.90 -92.71 -0.73 19.19 16 38 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.09 3.78 5.77 -2.91 -0.02 3.77 16 40 H 0.11 3.71 7.10 -2.91 -0.02 3.69 16 Total: -1.00 -67.23 327.48 4.89 -62.35 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.31 Total: 40.12 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 3.92 Total: -34.28 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.34 Total: -82.31 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.03 Total: -31.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.23 4.89 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984945.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.198 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds