Wall clock time and date at job start Mon Mar 30 2020 02:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00177 * 2 1 4 4 N 1.46903 * 109.46492 * 124.98987 * 3 2 1 5 5 C 1.46895 * 111.00122 * 300.43833 * 4 3 2 6 6 C 1.50690 * 109.47344 * 288.39028 * 5 4 3 7 7 C 1.31007 * 120.00085 * 125.00384 * 6 5 4 8 8 C 1.46897 * 110.99842 * 64.40219 * 4 3 2 9 9 C 1.50700 * 109.47770 * 66.04071 * 8 4 3 10 10 C 1.38299 * 119.92826 * 89.99685 * 9 8 4 11 11 C 1.38107 * 120.06443 * 179.97438 * 10 9 8 12 12 C 1.38876 * 119.92996 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06687 * 180.02562 * 12 11 10 14 14 C 1.34833 * 116.99933 * 5.71281 * 13 12 11 15 15 H 1.07996 * 120.00166 * 354.90894 * 14 13 12 16 16 C 1.38660 * 119.99734 * 174.91964 * 14 13 12 17 17 N 1.31553 * 120.00204 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99672 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47413 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47374 * 119.99793 * 18 16 14 21 21 H 1.48503 * 109.47026 * 239.99858 * 18 16 14 22 22 C 1.38876 * 119.86556 * 0.27242 * 12 11 10 23 23 C 1.38108 * 119.92706 * 359.40721 * 22 12 11 24 24 H 1.07997 * 120.00197 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99687 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99511 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46700 * 4.99276 * 3 2 1 28 28 H 1.09001 * 109.47063 * 244.98848 * 3 2 1 29 29 H 1.08997 * 109.46943 * 48.39632 * 5 4 3 30 30 H 1.09001 * 109.46458 * 168.38891 * 5 4 3 31 31 H 1.08005 * 120.00424 * 305.00047 * 6 5 4 32 32 H 1.08000 * 119.99905 * 359.97438 * 7 6 5 33 33 H 1.07996 * 120.00055 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47068 * 306.03558 * 8 4 3 35 35 H 1.09005 * 109.46983 * 186.04034 * 8 4 3 36 36 H 1.07997 * 119.97024 * 0.02562 * 10 9 8 37 37 H 1.08000 * 120.02940 * 179.97438 * 11 10 9 38 38 H 0.97005 * 120.00001 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.03700 * 179.72319 * 22 12 11 40 40 H 1.07992 * 119.96458 * 180.31444 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9962 1.3319 1.1347 5 6 2.2789 1.1922 2.4090 6 6 1.5159 2.4592 2.6976 7 6 0.2268 2.4100 2.9257 8 6 4.0265 0.2944 0.9939 9 6 4.8982 0.6100 -0.1942 10 6 6.0307 1.3871 -0.0321 11 6 6.8319 1.6776 -1.1189 12 6 6.4990 1.1889 -2.3755 13 8 7.2847 1.4723 -3.4456 14 6 8.4352 2.1321 -3.2025 15 1 8.6564 2.4827 -2.2053 16 6 9.3343 2.3606 -4.2331 17 7 9.0651 1.9333 -5.4478 18 14 10.9279 3.2753 -3.8965 19 1 10.9912 3.6476 -2.4603 20 1 12.0807 2.4019 -4.2331 21 1 10.9785 4.5043 -4.7286 22 6 5.3577 0.4141 -2.5361 23 6 4.5642 0.1216 -1.4442 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6215 1.4025 -0.9313 29 1 1.5832 0.3557 2.3445 30 1 2.9946 1.0085 3.2104 31 1 2.0318 3.4079 2.7164 32 1 -0.2892 1.4614 2.9065 33 1 -0.3201 3.3181 3.1320 34 1 3.5490 -0.6743 0.8471 35 1 4.6382 0.2650 1.8956 36 1 6.2894 1.7664 0.9454 37 1 7.7159 2.2848 -0.9917 38 1 9.6940 2.0936 -6.1688 39 1 5.0938 0.0364 -3.5128 40 1 3.6794 -0.4852 -1.5675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077012567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:34 Heat of formation + Delta-G solvation = 46.840461 kcal Electronic energy + Delta-G solvation = -20247.784570 eV Core-core repulsion = 17222.653434 eV Total energy + Delta-G solvation = -3025.131135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36666 -38.32575 -36.31488 -33.97268 -32.92947 -32.18937 -30.17276 -29.64860 -26.87762 -26.03058 -24.93125 -22.48228 -21.85556 -20.77607 -19.86699 -19.18755 -17.96171 -16.90119 -16.26363 -15.65906 -14.92208 -14.90265 -14.56611 -14.48625 -14.11440 -13.59706 -13.51201 -13.33729 -13.06429 -12.69831 -12.52295 -12.00240 -11.75823 -11.61870 -11.41892 -11.40366 -11.25513 -11.15510 -10.74739 -10.61636 -10.49558 -10.40325 -9.57150 -9.43226 -9.30163 -8.81958 -8.23765 -8.11969 -7.14663 -6.43760 -4.02314 2.06687 2.17995 2.25260 2.36829 3.13243 3.14914 3.20481 3.98006 4.14364 4.67256 4.85016 4.86848 5.02406 5.07170 5.12071 5.26382 5.31309 5.38220 5.42134 5.58562 5.63417 5.74895 5.79247 5.82419 5.89344 5.93569 6.06706 6.23728 6.44569 6.48810 6.51283 6.53518 6.64236 6.73009 6.93549 7.06891 7.12486 7.19159 7.31511 7.44527 7.47425 7.85658 8.01786 9.02260 9.72885 10.74454 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.003540 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.782769 B = 7908.650963 C = 8367.808370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.183 4.183 3 C 0.076 3.924 4 N -0.522 5.522 5 C 0.074 3.926 6 C -0.133 4.133 7 C -0.200 4.200 8 C 0.109 3.891 9 C -0.178 4.178 10 C -0.050 4.050 11 C -0.235 4.235 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.194 4.194 23 C -0.068 4.068 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 -2.018 13.774 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.203 4.203 3 C -0.052 4.052 4 N -0.244 5.244 5 C -0.053 4.053 6 C -0.152 4.152 7 C -0.238 4.238 8 C -0.017 4.017 9 C -0.179 4.179 10 C -0.069 4.069 11 C -0.254 4.254 12 C 0.102 3.898 13 O -0.083 6.083 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.213 4.213 23 C -0.087 4.087 24 H 0.110 0.890 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.079 0.921 39 H 0.133 0.867 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.977 -1.593 13.312 18.659 hybrid contribution 0.368 -0.316 0.123 0.500 sum -12.609 -1.910 13.435 18.524 Atomic orbital electron populations 1.23812 0.95918 1.01522 1.01316 1.23710 0.96654 1.00401 0.99494 1.21455 0.94323 0.93647 0.95760 1.62305 1.12818 1.48308 1.00936 1.21277 0.96766 0.94881 0.92377 1.22931 0.95572 0.98997 0.97689 1.23806 0.96001 1.01523 1.02486 1.20848 0.91930 0.91898 0.97035 1.19042 0.98542 1.06458 0.93885 1.20561 0.93438 0.95450 0.97403 1.21160 1.03578 1.07865 0.92830 1.19390 0.91046 0.91965 0.87390 1.83976 1.30073 1.65813 1.28397 1.21382 0.94022 1.34174 0.97111 0.89000 1.25289 0.99083 0.97615 0.94572 1.70049 1.36206 1.43349 1.00241 0.85651 0.80179 0.78800 0.78826 1.19076 1.20169 1.20160 1.20169 0.96943 1.05160 0.99064 1.20488 0.97742 0.98606 0.91879 0.88962 0.88618 0.87506 0.90642 0.88690 0.93986 0.90346 0.86974 0.88929 0.88621 0.94621 0.90941 0.87540 0.85642 0.92104 0.86692 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.81 14.32 29.01 0.42 -1.40 16 2 C -0.18 -2.01 7.35 -36.02 -0.26 -2.28 16 3 C 0.08 0.95 5.32 -4.97 -0.03 0.92 16 4 N -0.52 -6.65 4.65 -238.97 -1.11 -7.77 16 5 C 0.07 0.79 5.27 -4.98 -0.03 0.76 16 6 C -0.13 -1.34 8.92 -36.03 -0.32 -1.66 16 7 C -0.20 -1.76 14.32 29.01 0.42 -1.35 16 8 C 0.11 1.47 4.95 -4.98 -0.02 1.44 16 9 C -0.18 -2.99 4.89 -104.58 -0.51 -3.50 16 10 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 11 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 12 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 13 O -0.18 -5.15 9.76 0.04 0.00 -5.15 16 14 C -0.39 -10.98 9.49 30.89 0.29 -10.68 16 15 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 17 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 18 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 23 C -0.07 -1.20 7.89 -39.61 -0.31 -1.51 16 24 H 0.09 0.78 8.06 -52.49 -0.42 0.36 16 25 H 0.10 0.88 7.84 -52.49 -0.41 0.47 16 26 H 0.11 1.19 6.78 -52.49 -0.36 0.83 16 27 H 0.08 0.92 7.15 -51.93 -0.37 0.55 16 28 H 0.10 1.39 5.86 -51.93 -0.30 1.08 16 29 H 0.04 0.44 6.36 -51.93 -0.33 0.11 16 30 H 0.08 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.11 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.09 0.78 7.84 -52.49 -0.41 0.37 16 33 H 0.10 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.04 0.45 6.28 -51.93 -0.33 0.12 16 35 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 38 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.11 1.61 7.89 -52.49 -0.41 1.19 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -29.75 333.74 -7.76 -37.51 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.55 Total: 5.51 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -1.86 Total: -26.05 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: -0.35 Total: -32.45 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.75 -7.76 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077012567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.352 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds