Wall clock time and date at job start Mon Mar 30 2020 02:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 120.00177 * 2 1 4 4 N 1.46903 * 109.46492 * 124.98987 * 3 2 1 5 5 C 1.46895 * 111.00122 * 300.43833 * 4 3 2 6 6 C 1.50690 * 109.47344 * 288.39028 * 5 4 3 7 7 C 1.31007 * 120.00085 * 125.00384 * 6 5 4 8 8 C 1.46897 * 110.99842 * 64.40219 * 4 3 2 9 9 C 1.50700 * 109.47770 * 66.04071 * 8 4 3 10 10 C 1.38299 * 119.92826 * 89.99685 * 9 8 4 11 11 C 1.38107 * 120.06443 * 179.97438 * 10 9 8 12 12 C 1.38876 * 119.92996 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06687 * 180.02562 * 12 11 10 14 14 C 1.34833 * 116.99933 * 5.71281 * 13 12 11 15 15 H 1.07996 * 120.00166 * 354.90894 * 14 13 12 16 16 C 1.38660 * 119.99734 * 174.91964 * 14 13 12 17 17 N 1.31553 * 120.00204 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99672 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47413 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47374 * 119.99793 * 18 16 14 21 21 H 1.48503 * 109.47026 * 239.99858 * 18 16 14 22 22 C 1.38876 * 119.86556 * 0.27242 * 12 11 10 23 23 C 1.38108 * 119.92706 * 359.40721 * 22 12 11 24 24 H 1.07997 * 120.00197 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.99687 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99511 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46700 * 4.99276 * 3 2 1 28 28 H 1.09001 * 109.47063 * 244.98848 * 3 2 1 29 29 H 1.08997 * 109.46943 * 48.39632 * 5 4 3 30 30 H 1.09001 * 109.46458 * 168.38891 * 5 4 3 31 31 H 1.08005 * 120.00424 * 305.00047 * 6 5 4 32 32 H 1.08000 * 119.99905 * 359.97438 * 7 6 5 33 33 H 1.07996 * 120.00055 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47068 * 306.03558 * 8 4 3 35 35 H 1.09005 * 109.46983 * 186.04034 * 8 4 3 36 36 H 1.07997 * 119.97024 * 0.02562 * 10 9 8 37 37 H 1.08000 * 120.02940 * 179.97438 * 11 10 9 38 38 H 0.97005 * 120.00001 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.03700 * 179.72319 * 22 12 11 40 40 H 1.07992 * 119.96458 * 180.31444 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9962 1.3319 1.1347 5 6 2.2789 1.1922 2.4090 6 6 1.5159 2.4592 2.6976 7 6 0.2268 2.4100 2.9257 8 6 4.0265 0.2944 0.9939 9 6 4.8982 0.6100 -0.1942 10 6 6.0307 1.3871 -0.0321 11 6 6.8319 1.6776 -1.1189 12 6 6.4990 1.1889 -2.3755 13 8 7.2847 1.4723 -3.4456 14 6 8.4352 2.1321 -3.2025 15 1 8.6564 2.4827 -2.2053 16 6 9.3343 2.3606 -4.2331 17 7 9.0651 1.9333 -5.4478 18 14 10.9279 3.2753 -3.8965 19 1 10.9912 3.6476 -2.4603 20 1 12.0807 2.4019 -4.2331 21 1 10.9785 4.5043 -4.7286 22 6 5.3577 0.4141 -2.5361 23 6 4.5642 0.1216 -1.4442 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6215 1.4025 -0.9313 29 1 1.5832 0.3557 2.3445 30 1 2.9946 1.0085 3.2104 31 1 2.0318 3.4079 2.7164 32 1 -0.2892 1.4614 2.9065 33 1 -0.3201 3.3181 3.1320 34 1 3.5490 -0.6743 0.8471 35 1 4.6382 0.2650 1.8956 36 1 6.2894 1.7664 0.9454 37 1 7.7159 2.2848 -0.9917 38 1 9.6940 2.0936 -6.1688 39 1 5.0938 0.0364 -3.5128 40 1 3.6794 -0.4852 -1.5675 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077012567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:33 Heat of formation + Delta-G solvation = 29.324990 kcal Electronic energy + Delta-G solvation = -20248.544098 eV Core-core repulsion = 17222.653434 eV Total energy + Delta-G solvation = -3025.890663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90112 -39.63669 -37.89023 -34.77214 -34.37854 -33.70995 -31.78592 -31.04688 -27.86684 -27.58157 -26.49727 -23.70333 -23.37203 -22.06784 -20.82097 -20.08953 -19.79088 -18.78397 -17.20516 -16.65672 -16.45452 -16.20034 -15.99218 -15.73032 -15.44718 -15.29521 -14.99371 -14.39439 -14.27566 -14.11013 -13.93794 -13.55464 -13.09543 -12.79143 -12.67982 -12.51489 -12.41997 -12.28896 -12.19840 -12.09446 -12.07914 -11.68773 -11.15050 -10.79527 -10.34031 -10.20743 -9.73387 -9.20793 -8.85327 -8.46547 -6.14427 0.62063 0.69220 1.34693 1.35460 1.43157 1.46423 1.53867 2.18371 2.79259 3.10389 3.41739 3.53710 4.01911 4.02167 4.06154 4.10516 4.20217 4.25336 4.33143 4.51191 4.53569 4.62250 4.67541 4.80964 4.83597 4.87422 4.99728 5.08733 5.11547 5.14624 5.19255 5.32157 5.57456 5.69433 5.72351 5.75046 5.79583 5.84739 5.89569 6.04400 6.15816 6.24855 6.32912 6.98529 7.80070 8.77099 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032370 B = 0.003540 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.782769 B = 7908.650963 C = 8367.808370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.198 4.198 3 C 0.079 3.921 4 N -0.534 5.534 5 C 0.079 3.921 6 C -0.151 4.151 7 C -0.187 4.187 8 C 0.112 3.888 9 C -0.150 4.150 10 C -0.050 4.050 11 C -0.243 4.243 12 C 0.115 3.885 13 O -0.234 6.234 14 C -0.412 4.412 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.019 2.981 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.206 4.206 23 C -0.057 4.057 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.272 0.728 39 H 0.110 0.890 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 -2.348 16.887 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C -0.049 4.049 4 N -0.256 5.256 5 C -0.048 4.048 6 C -0.170 4.170 7 C -0.224 4.224 8 C -0.015 4.015 9 C -0.151 4.151 10 C -0.069 4.069 11 C -0.263 4.263 12 C 0.064 3.936 13 O -0.141 6.141 14 C -0.488 4.488 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.838 3.162 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.225 4.225 23 C -0.076 4.076 24 H 0.126 0.874 25 H 0.118 0.882 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.128 0.872 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.708 -1.935 16.479 22.173 hybrid contribution 0.514 -0.310 -0.601 0.850 sum -14.194 -2.245 15.878 21.416 Atomic orbital electron populations 1.23985 0.95526 1.02491 0.98953 1.23567 0.97059 0.99489 1.01625 1.21336 0.94170 0.94789 0.94562 1.62222 1.13312 1.48046 1.02015 1.21277 0.96946 0.95346 0.91206 1.22883 0.96074 0.98582 0.99452 1.23953 0.95548 1.02328 1.00596 1.20859 0.92019 0.92894 0.95735 1.19552 0.97585 1.03054 0.94930 1.20901 0.93213 0.95177 0.97579 1.21247 1.04020 1.07932 0.93067 1.19917 0.91954 0.93928 0.87776 1.83938 1.31285 1.68228 1.30650 1.21861 0.94557 1.34560 0.97863 0.88161 1.26589 1.02917 0.98510 0.94081 1.70192 1.38139 1.46146 1.01551 0.84528 0.74871 0.77361 0.79433 1.17468 1.19304 1.19344 1.20412 0.96719 1.05069 1.00296 1.20817 0.97730 0.97963 0.91048 0.87442 0.88191 0.87293 0.90591 0.91222 0.93333 0.89545 0.87684 0.88205 0.87617 0.92947 0.89194 0.84533 0.86578 0.91871 0.87169 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 14.32 67.78 0.97 -1.73 16 2 C -0.20 -3.70 7.35 25.65 0.19 -3.51 16 3 C 0.08 1.78 5.32 85.56 0.46 2.24 16 4 N -0.53 -11.92 4.65 -909.97 -4.23 -16.15 16 5 C 0.08 1.41 5.27 85.55 0.45 1.86 16 6 C -0.15 -2.62 8.92 25.64 0.23 -2.39 16 7 C -0.19 -2.69 14.32 67.77 0.97 -1.72 16 8 C 0.11 2.56 4.95 85.56 0.42 2.98 16 9 C -0.15 -4.67 4.89 -19.84 -0.10 -4.77 16 10 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 11 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 12 C 0.11 5.81 6.65 22.58 0.15 5.96 16 13 O -0.23 -14.37 9.76 -22.77 -0.22 -14.59 16 14 C -0.41 -24.42 9.49 67.92 0.64 -23.78 16 15 H 0.10 5.48 5.21 -2.91 -0.02 5.46 16 16 C -0.02 -1.37 5.49 84.84 0.47 -0.91 16 17 N -0.92 -57.32 13.67 21.61 0.30 -57.02 16 18 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 19 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 C -0.21 -8.90 9.99 22.39 0.22 -8.68 16 23 C -0.06 -1.92 7.89 22.25 0.18 -1.75 16 24 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 25 H 0.10 1.49 7.84 -2.91 -0.02 1.47 16 26 H 0.11 2.00 6.78 -2.91 -0.02 1.98 16 27 H 0.08 1.69 7.15 -2.39 -0.02 1.67 16 28 H 0.07 1.91 5.86 -2.39 -0.01 1.90 16 29 H 0.05 0.82 6.36 -2.39 -0.02 0.80 16 30 H 0.09 1.40 7.82 -2.39 -0.02 1.38 16 31 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.10 1.31 7.84 -2.91 -0.02 1.28 16 33 H 0.11 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.05 1.08 6.28 -2.39 -0.02 1.06 16 35 H 0.09 1.83 7.81 -2.38 -0.02 1.81 16 36 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 37 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 38 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 39 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.14 3.79 7.89 -2.91 -0.02 3.77 16 Total: -1.00 -69.09 333.74 4.56 -64.53 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 1.01 Total: 26.10 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 5.67 Total: -48.34 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -3.94 Total: -73.18 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.09 4.56 -64.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077012567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.857 kcal (2) G-P(sol) polarization free energy of solvation -69.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds