Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47249 * 2 1 4 4 C 1.52999 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55033 * 29.32994 * 4 3 2 6 6 C 1.53076 * 117.51137 * 243.61084 * 4 3 2 7 7 C 1.53003 * 59.98419 * 252.51855 * 6 4 3 8 8 H 1.08997 * 117.49468 * 107.50049 * 7 6 4 9 9 C 1.50693 * 117.50020 * 252.49718 * 7 6 4 10 10 O 1.21291 * 119.99833 * 68.74956 * 9 7 6 11 11 N 1.34770 * 120.00526 * 248.74351 * 9 7 6 12 12 C 1.39241 * 120.00812 * 184.97922 * 11 9 7 13 13 C 1.39478 * 119.83519 * 211.53894 * 12 11 9 14 14 C 1.36376 * 120.16814 * 180.02562 * 13 12 11 15 15 C 1.40871 * 119.82711 * 359.97438 * 14 13 12 16 16 C 1.41148 * 120.16105 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00390 * 330.43846 * 16 15 14 18 18 C 1.39906 * 120.00016 * 150.43840 * 16 15 14 19 19 N 1.30878 * 119.99720 * 333.69704 * 18 16 15 20 20 Si 1.86795 * 120.00443 * 153.69987 * 18 16 15 21 21 H 1.48502 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47179 * 240.00203 * 20 18 16 23 23 H 1.48496 * 109.47431 * 120.00047 * 20 18 16 24 24 C 1.40868 * 119.67256 * 0.25689 * 15 14 13 25 25 C 1.36374 * 119.82889 * 359.48119 * 24 15 14 26 26 H 1.08999 * 109.47215 * 59.99500 * 1 2 3 27 27 H 1.08994 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.46830 * 240.00331 * 2 1 3 30 30 H 1.08999 * 109.47215 * 120.00500 * 2 1 3 31 31 H 1.09000 * 109.46934 * 60.00394 * 3 2 1 32 32 H 1.08999 * 109.47420 * 300.00374 * 3 2 1 33 33 H 1.09005 * 117.51064 * 145.04706 * 6 4 3 34 34 H 1.09002 * 117.49712 * 0.02562 * 6 4 3 35 35 H 0.97011 * 119.99563 * 4.98306 * 11 9 7 36 36 H 1.08005 * 119.91774 * 0.04383 * 13 12 11 37 37 H 1.08001 * 120.08839 * 179.97438 * 14 13 12 38 38 H 0.96997 * 120.00078 * 354.21069 * 19 18 16 39 39 H 1.07997 * 120.08732 * 179.72621 * 24 15 14 40 40 H 1.08000 * 119.91960 * 180.25425 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0400 0.5852 -0.4827 6 6 4.2776 2.0457 1.2153 7 6 4.2765 2.7945 -0.1190 8 1 3.6513 3.6839 -0.1963 9 6 5.5687 2.8390 -0.8930 10 8 6.0100 1.8269 -1.3951 11 7 6.2340 4.0033 -1.0274 12 6 7.3715 4.0669 -1.8279 13 6 8.3994 4.9523 -1.5040 14 6 9.5163 5.0205 -2.2836 15 6 9.6304 4.1935 -3.4182 16 6 10.7830 4.2587 -4.2303 17 1 11.3337 5.1841 -4.3130 18 6 11.2122 3.1246 -4.9282 19 7 10.9186 1.9305 -4.4800 20 14 12.2042 3.3146 -6.4995 21 1 12.4000 4.7577 -6.7899 22 1 11.4746 2.6782 -7.6255 23 1 13.5261 2.6589 -6.3327 24 6 8.5859 3.3053 -3.7417 25 6 7.4775 3.2445 -2.9495 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 5.2132 1.5853 1.5332 34 1 3.6529 2.4421 2.0158 35 1 5.9204 4.7971 -0.5664 36 1 8.3108 5.5852 -0.6333 37 1 10.3113 5.7069 -2.0317 38 1 10.4772 1.8294 -3.6222 39 1 8.6645 2.6714 -4.6125 40 1 6.6777 2.5611 -3.1939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079319212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -19.110936 kcal Electronic energy + Delta-G solvation = -19866.344259 eV Core-core repulsion = 16838.353256 eV Total energy + Delta-G solvation = -3027.991002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98097 -38.03442 -36.80657 -34.60538 -33.97317 -32.93069 -29.68481 -28.89955 -27.63897 -25.31859 -23.51212 -22.13783 -21.52878 -20.94890 -20.42291 -19.39574 -17.89072 -17.15530 -16.37400 -15.40803 -14.96418 -14.68275 -14.44664 -14.23226 -14.03027 -13.53517 -13.22179 -12.96648 -12.56848 -12.40505 -12.36323 -12.12282 -11.93542 -11.49674 -11.39711 -11.18827 -11.08595 -11.02505 -11.00721 -10.40618 -10.28071 -10.08375 -10.00969 -9.75275 -9.33472 -9.07678 -8.72100 -7.74990 -7.24228 -7.02034 -4.35056 2.45498 2.89965 3.00904 3.18307 3.32235 3.37085 3.57677 3.89564 4.05116 4.52540 4.60136 4.69829 4.78088 4.92460 4.98170 5.13238 5.24483 5.34625 5.50113 5.53093 5.60076 5.61621 5.68258 5.84711 5.90287 6.02259 6.04407 6.07311 6.26265 6.28803 6.65797 6.84163 6.91759 7.13076 7.39362 7.49769 7.77424 7.79275 7.85351 8.18433 8.24186 8.30531 8.69728 8.83454 8.93658 10.09631 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.003257 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.131401 B = 8594.225020 C = 9211.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.151 4.151 7 C -0.186 4.186 8 H 0.119 0.881 9 C 0.525 3.475 10 O -0.531 6.531 11 N -0.647 5.647 12 C -0.014 4.014 13 C -0.096 4.096 14 C -0.215 4.215 15 C 0.093 3.907 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.038 3.962 19 N -0.795 5.795 20 Si 1.069 2.931 21 H -0.277 1.277 22 H -0.274 1.274 23 H -0.279 1.279 24 C -0.205 4.205 25 C -0.070 4.070 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.395 0.605 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.300 0.700 39 H 0.104 0.896 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.911 0.695 8.519 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.126 4.126 4 C -0.138 4.138 5 H 0.136 0.864 6 C -0.189 4.189 7 C -0.207 4.207 8 H 0.137 0.863 9 C 0.312 3.688 10 O -0.408 6.408 11 N -0.289 5.289 12 C -0.106 4.106 13 C -0.116 4.116 14 C -0.235 4.235 15 C 0.090 3.910 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.184 4.184 19 N -0.418 5.418 20 Si 0.893 3.107 21 H -0.202 1.202 22 H -0.200 1.200 23 H -0.204 1.204 24 C -0.224 4.224 25 C -0.090 4.090 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.229 0.771 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.926 -0.940 6.937 15.586 hybrid contribution -0.837 1.402 1.605 2.289 sum -14.762 0.462 8.541 17.062 Atomic orbital electron populations 1.21780 0.95969 1.01570 1.01689 1.21507 0.95524 0.96593 1.02437 1.21231 0.92078 0.97287 1.02034 1.22447 0.94434 0.95803 1.01112 0.86402 1.23094 1.03062 1.02432 0.90288 1.22301 0.98016 0.98524 1.01893 0.86269 1.19611 0.84880 0.83402 0.80904 1.90696 1.67961 1.33783 1.48376 1.42903 1.27186 1.10985 1.47852 1.17119 0.89733 1.07297 0.96500 1.20105 0.93384 0.99329 0.98793 1.20563 0.98196 1.06926 0.97802 1.17725 0.92531 0.90597 0.90190 1.20509 1.10016 0.99774 1.24946 0.90570 1.27012 0.96845 0.91685 1.02898 1.70400 1.26792 1.24689 1.19871 0.83593 0.76194 0.76554 0.74322 1.20168 1.19970 1.20445 1.20801 0.94504 1.05707 1.01430 1.20404 0.98194 0.97572 0.92800 0.92756 0.92788 0.92873 0.91698 0.91826 0.91776 0.91450 0.88337 0.88080 0.77127 0.89008 0.88483 0.88713 0.87751 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.05 5.89 -26.73 -0.16 -1.21 16 3 C -0.09 -0.81 5.50 -26.73 -0.15 -0.96 16 4 C -0.12 -1.40 5.25 -90.58 -0.48 -1.88 16 5 H 0.12 1.66 7.60 -51.93 -0.39 1.26 16 6 C -0.15 -1.65 9.88 -26.69 -0.26 -1.91 16 7 C -0.19 -2.37 5.91 -91.77 -0.54 -2.91 16 8 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 9 C 0.53 9.46 7.36 -10.99 -0.08 9.38 16 10 O -0.53 -11.95 13.77 5.55 0.08 -11.87 16 11 N -0.65 -11.61 5.32 -9.74 -0.05 -11.66 16 12 C -0.01 -0.32 6.33 -83.57 -0.53 -0.85 16 13 C -0.10 -2.12 9.89 -39.79 -0.39 -2.52 16 14 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 15 C 0.09 2.50 5.18 -106.80 -0.55 1.95 16 16 C -0.52 -14.14 8.94 -37.85 -0.34 -14.48 16 17 H 0.08 1.99 7.97 -52.49 -0.42 1.57 16 18 C 0.04 0.98 4.87 -17.33 -0.08 0.90 16 19 N -0.79 -21.93 12.49 55.55 0.69 -21.24 16 20 Si 1.07 22.10 30.01 -169.99 -5.10 17.00 16 21 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 C -0.20 -5.49 8.00 -39.26 -0.31 -5.80 16 25 C -0.07 -1.75 8.58 -39.79 -0.34 -2.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.50 7.88 -51.93 -0.41 0.09 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 35 H 0.40 5.51 8.81 -40.82 -0.36 5.15 16 36 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.30 8.62 6.97 -40.82 -0.28 8.33 16 39 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 40 H 0.11 2.69 6.24 -52.49 -0.33 2.36 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -30.60 335.76 -9.55 -40.15 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.99 Total: 11.35 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -4.24 Total: -28.78 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.64 Total: -32.90 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.10 Total: 17.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.60 -9.55 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079319212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.043 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds