Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47249 * 2 1 4 4 C 1.52999 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55033 * 29.32994 * 4 3 2 6 6 C 1.53076 * 117.51137 * 243.61084 * 4 3 2 7 7 C 1.53003 * 59.98419 * 252.51855 * 6 4 3 8 8 H 1.08997 * 117.49468 * 107.50049 * 7 6 4 9 9 C 1.50693 * 117.50020 * 252.49718 * 7 6 4 10 10 O 1.21291 * 119.99833 * 68.74956 * 9 7 6 11 11 N 1.34770 * 120.00526 * 248.74351 * 9 7 6 12 12 C 1.39241 * 120.00812 * 184.97922 * 11 9 7 13 13 C 1.39478 * 119.83519 * 211.53894 * 12 11 9 14 14 C 1.36376 * 120.16814 * 180.02562 * 13 12 11 15 15 C 1.40871 * 119.82711 * 359.97438 * 14 13 12 16 16 C 1.41148 * 120.16105 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00390 * 330.43846 * 16 15 14 18 18 C 1.39906 * 120.00016 * 150.43840 * 16 15 14 19 19 N 1.30878 * 119.99720 * 333.69704 * 18 16 15 20 20 Si 1.86795 * 120.00443 * 153.69987 * 18 16 15 21 21 H 1.48502 * 109.47120 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47179 * 240.00203 * 20 18 16 23 23 H 1.48496 * 109.47431 * 120.00047 * 20 18 16 24 24 C 1.40868 * 119.67256 * 0.25689 * 15 14 13 25 25 C 1.36374 * 119.82889 * 359.48119 * 24 15 14 26 26 H 1.08999 * 109.47215 * 59.99500 * 1 2 3 27 27 H 1.08994 * 109.46961 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46830 * 299.99669 * 1 2 3 29 29 H 1.09000 * 109.46830 * 240.00331 * 2 1 3 30 30 H 1.08999 * 109.47215 * 120.00500 * 2 1 3 31 31 H 1.09000 * 109.46934 * 60.00394 * 3 2 1 32 32 H 1.08999 * 109.47420 * 300.00374 * 3 2 1 33 33 H 1.09005 * 117.51064 * 145.04706 * 6 4 3 34 34 H 1.09002 * 117.49712 * 0.02562 * 6 4 3 35 35 H 0.97011 * 119.99563 * 4.98306 * 11 9 7 36 36 H 1.08005 * 119.91774 * 0.04383 * 13 12 11 37 37 H 1.08001 * 120.08839 * 179.97438 * 14 13 12 38 38 H 0.96997 * 120.00078 * 354.21069 * 19 18 16 39 39 H 1.07997 * 120.08732 * 179.72621 * 24 15 14 40 40 H 1.08000 * 119.91960 * 180.25425 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0400 0.5852 -0.4827 6 6 4.2776 2.0457 1.2153 7 6 4.2765 2.7945 -0.1190 8 1 3.6513 3.6839 -0.1963 9 6 5.5687 2.8390 -0.8930 10 8 6.0100 1.8269 -1.3951 11 7 6.2340 4.0033 -1.0274 12 6 7.3715 4.0669 -1.8279 13 6 8.3994 4.9523 -1.5040 14 6 9.5163 5.0205 -2.2836 15 6 9.6304 4.1935 -3.4182 16 6 10.7830 4.2587 -4.2303 17 1 11.3337 5.1841 -4.3130 18 6 11.2122 3.1246 -4.9282 19 7 10.9186 1.9305 -4.4800 20 14 12.2042 3.3146 -6.4995 21 1 12.4000 4.7577 -6.7899 22 1 11.4746 2.6782 -7.6255 23 1 13.5261 2.6589 -6.3327 24 6 8.5859 3.3053 -3.7417 25 6 7.4775 3.2445 -2.9495 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 5.2132 1.5853 1.5332 34 1 3.6529 2.4421 2.0158 35 1 5.9204 4.7971 -0.5664 36 1 8.3108 5.5852 -0.6333 37 1 10.3113 5.7069 -2.0317 38 1 10.4772 1.8294 -3.6222 39 1 8.6645 2.6714 -4.6125 40 1 6.6777 2.5611 -3.1939 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079319212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -35.802698 kcal Electronic energy + Delta-G solvation = -19867.068068 eV Core-core repulsion = 16838.353256 eV Total energy + Delta-G solvation = -3028.714812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47188 -39.62890 -38.13637 -36.38024 -34.84798 -34.65062 -31.65159 -30.74703 -28.47125 -27.00939 -24.98323 -23.40985 -22.93770 -22.49240 -21.44531 -20.85054 -19.86270 -18.57731 -17.97432 -16.58636 -16.25499 -16.19024 -15.88862 -15.71191 -15.46866 -14.96817 -14.58450 -14.31399 -14.19560 -13.93966 -13.71936 -13.29779 -13.10376 -13.00153 -12.91443 -12.73852 -12.22596 -11.97732 -11.95899 -11.93662 -11.68801 -11.59981 -11.17885 -11.11058 -10.97527 -10.81801 -10.54524 -9.72567 -9.26108 -8.94346 -6.40417 0.66518 0.90440 1.46973 1.49416 1.71206 1.78226 2.22471 2.32713 2.64704 2.85864 3.49373 3.61624 3.72025 3.85227 4.13742 4.19284 4.26112 4.28734 4.30627 4.37858 4.63132 4.71969 4.81786 4.86981 4.92146 4.93552 4.99040 5.02247 5.06704 5.20243 5.25540 5.35855 5.39887 5.40346 5.50961 5.60876 5.72142 5.81202 5.90180 6.21462 6.32947 6.65809 6.74209 6.92312 7.34786 8.01837 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.003257 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.131401 B = 8594.225020 C = 9211.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.125 4.125 5 H 0.084 0.916 6 C -0.131 4.131 7 C -0.188 4.188 8 H 0.156 0.844 9 C 0.520 3.480 10 O -0.583 6.583 11 N -0.639 5.639 12 C 0.005 3.995 13 C -0.090 4.090 14 C -0.221 4.221 15 C 0.063 3.937 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.001 4.001 19 N -0.822 5.822 20 Si 1.122 2.878 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.266 1.266 24 C -0.222 4.222 25 C -0.087 4.087 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.420 0.580 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.278 0.722 39 H 0.079 0.921 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 2.572 10.492 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.118 4.118 4 C -0.144 4.144 5 H 0.102 0.898 6 C -0.168 4.168 7 C -0.209 4.209 8 H 0.174 0.826 9 C 0.310 3.690 10 O -0.464 6.464 11 N -0.283 5.283 12 C -0.089 4.089 13 C -0.110 4.110 14 C -0.241 4.241 15 C 0.060 3.940 16 C -0.586 4.586 17 H 0.096 0.904 18 C -0.216 4.216 19 N -0.445 5.445 20 Si 0.939 3.061 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.191 1.191 24 C -0.242 4.242 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.258 0.742 36 H 0.157 0.843 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.758 0.977 8.955 18.151 hybrid contribution -0.442 0.817 1.158 1.485 sum -16.200 1.794 10.114 19.182 Atomic orbital electron populations 1.21757 0.94689 1.02017 1.02268 1.21513 0.96616 0.96378 1.01770 1.21220 0.89696 0.97676 1.03202 1.22474 0.96170 0.94104 1.01630 0.89763 1.23226 1.02666 1.00658 0.90277 1.22308 0.95492 1.00519 1.02545 0.82596 1.20630 0.86013 0.82319 0.80068 1.90689 1.69539 1.35681 1.50452 1.42854 1.25817 1.12416 1.47221 1.17251 0.91080 1.05197 0.95339 1.20488 0.91908 0.99131 0.99505 1.20859 0.99580 1.06446 0.97185 1.18039 0.92759 0.91592 0.91576 1.20704 1.10778 1.00241 1.26866 0.90392 1.28527 0.96854 0.90851 1.05340 1.70540 1.28998 1.25682 1.19320 0.82966 0.75162 0.77646 0.70319 1.18236 1.19534 1.19067 1.20684 0.95709 1.06309 1.01510 1.20448 0.97582 0.98532 0.94126 0.92748 0.92510 0.91674 0.93370 0.91663 0.89292 0.91438 0.90024 0.84110 0.74199 0.84274 0.87015 0.91043 0.90281 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.13 -1.95 5.89 30.59 0.18 -1.77 16 3 C -0.08 -1.24 5.50 30.59 0.17 -1.08 16 4 C -0.12 -2.73 5.25 -10.77 -0.06 -2.79 16 5 H 0.08 2.44 7.60 -2.39 -0.02 2.42 16 6 C -0.13 -2.43 9.88 30.62 0.30 -2.13 16 7 C -0.19 -4.24 5.91 -11.54 -0.07 -4.30 16 8 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 9 C 0.52 18.17 7.36 87.66 0.64 18.82 16 10 O -0.58 -26.93 13.77 -3.06 -0.04 -26.97 16 11 N -0.64 -21.48 5.32 -303.11 -1.61 -23.09 16 12 C 0.00 0.21 6.33 38.56 0.24 0.46 16 13 C -0.09 -3.80 9.89 22.13 0.22 -3.58 16 14 C -0.22 -10.73 9.74 22.48 0.22 -10.52 16 15 C 0.06 3.52 5.18 -21.28 -0.11 3.41 16 16 C -0.56 -31.07 8.94 23.39 0.21 -30.86 16 17 H 0.08 4.17 7.97 -2.91 -0.02 4.14 16 18 C 0.00 -0.03 4.87 85.24 0.42 0.38 16 19 N -0.82 -47.76 12.49 21.82 0.27 -47.49 16 20 Si 1.12 45.20 30.01 68.60 2.06 47.26 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 24 C -0.22 -12.56 8.00 22.48 0.18 -12.38 16 25 C -0.09 -4.50 8.58 22.14 0.19 -4.31 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.97 7.88 -2.39 -0.02 0.95 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.14 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.42 10.03 8.81 -92.70 -0.82 9.22 16 36 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 38 H 0.28 17.12 6.97 -92.71 -0.65 16.47 16 39 H 0.08 4.75 6.86 -2.91 -0.02 4.73 16 40 H 0.10 5.12 6.24 -2.91 -0.02 5.10 16 Total: -1.00 -71.56 335.76 4.47 -67.09 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: 0.34 Total: 34.98 kcal Atomic # 6 Polarization: -55.23 SS G_CDS: 3.45 Total: -51.78 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.34 Total: -70.58 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.04 Total: -26.97 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.06 Total: 47.26 kcal Total: -71.56 4.47 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079319212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.289 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds