Wall clock time and date at job start Mon Mar 30 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47055 * 131.98268 * 3 2 1 5 5 C 1.35898 * 117.00306 * 179.97438 * 4 3 2 6 6 C 1.38727 * 120.05741 * 180.02562 * 5 4 3 7 7 C 1.38149 * 119.94387 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.05657 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.94178 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46887 * 90.00341 * 9 8 7 11 11 C 1.36933 * 119.99849 * 270.26894 * 10 9 8 12 12 H 1.08002 * 120.00080 * 145.79384 * 11 10 9 13 13 C 1.38812 * 120.00103 * 325.79494 * 11 10 9 14 14 N 1.31614 * 120.00204 * 336.81644 * 13 11 10 15 15 Si 1.86801 * 119.99803 * 156.81059 * 13 11 10 16 16 H 1.48503 * 109.46958 * 90.00219 * 15 13 11 17 17 H 1.48496 * 109.47354 * 209.99969 * 15 13 11 18 18 H 1.48493 * 109.47380 * 330.00445 * 15 13 11 19 19 C 1.46505 * 119.99894 * 89.99983 * 10 9 8 20 20 C 1.52996 * 109.47163 * 89.92504 * 19 10 9 21 21 C 1.53003 * 109.46886 * 179.97438 * 20 19 10 22 22 C 1.38265 * 120.11062 * 0.25377 * 8 7 6 23 23 C 1.38154 * 120.05602 * 359.45593 * 22 8 7 24 24 H 4.38450 * 5.44396 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47593 * 11.98673 * 3 2 1 26 26 H 1.09000 * 109.47319 * 251.97752 * 3 2 1 27 27 H 1.08003 * 120.02668 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.97078 * 179.97438 * 7 6 5 29 29 H 1.08994 * 109.47707 * 329.99769 * 9 8 7 30 30 H 1.08998 * 109.46526 * 209.99947 * 9 8 7 31 31 H 0.96999 * 119.99937 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.46517 * 209.92090 * 19 10 9 33 33 H 1.09003 * 109.47354 * 329.91896 * 19 10 9 34 34 H 1.09003 * 109.47066 * 299.99250 * 20 19 10 35 35 H 1.08996 * 109.47185 * 59.99679 * 20 19 10 36 36 H 1.09006 * 109.47002 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47014 * 299.99634 * 21 20 19 38 38 H 1.08996 * 109.47408 * 59.99892 * 21 20 19 39 39 H 1.08001 * 119.97598 * 179.70002 * 22 8 7 40 40 H 1.07996 * 120.02783 * 180.24611 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9021 -1.0015 5 6 4.4691 1.0223 -1.1336 6 6 5.0002 1.8801 -2.0858 7 6 6.3701 2.0001 -2.2184 8 6 7.2116 1.2657 -1.4034 9 6 8.7055 1.3981 -1.5507 10 7 9.1898 2.4671 -0.6738 11 6 9.2550 3.7545 -1.1355 12 1 9.0636 4.5791 -0.4648 13 6 9.5672 3.9999 -2.4657 14 7 10.2295 3.1012 -3.1628 15 14 9.0471 5.6055 -3.2662 16 1 10.1184 6.6181 -3.0864 17 1 8.8144 5.3833 -4.7159 18 1 7.7951 6.0917 -2.6328 19 6 9.5986 2.1596 0.6991 20 6 11.0886 1.8130 0.7220 21 6 11.5157 1.4925 2.1558 22 6 6.6848 0.4057 -0.4576 23 6 5.3156 0.2866 -0.3170 24 1 -1.0501 -0.0004 0.0001 25 1 3.0099 -1.0044 -0.2134 26 1 3.0092 0.3188 0.9772 27 1 4.3432 2.4531 -2.7234 28 1 6.7840 2.6674 -2.9598 29 1 8.9488 1.6388 -2.5855 30 1 9.1825 0.4576 -1.2747 31 1 10.4472 3.2725 -4.0924 32 1 9.4173 3.0262 1.3348 33 1 9.0225 1.3111 1.0684 34 1 11.2699 0.9464 0.0862 35 1 11.6647 2.6615 0.3527 36 1 12.5774 1.2461 2.1722 37 1 11.3345 2.3594 2.7912 38 1 10.9397 0.6443 2.5255 39 1 7.3442 -0.1706 0.1745 40 1 4.9046 -0.3823 0.4247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:23 Heat of formation + Delta-G solvation = 56.867337 kcal Electronic energy + Delta-G solvation = -20392.274437 eV Core-core repulsion = 17367.578099 eV Total energy + Delta-G solvation = -3024.696337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.80105 -37.58289 -35.76697 -33.57659 -32.87761 -31.14729 -30.47724 -29.58475 -27.62249 -25.56946 -25.16955 -22.27965 -22.08242 -20.77704 -19.76836 -18.52512 -17.94869 -16.77535 -15.93868 -15.73472 -14.91893 -14.63569 -14.24908 -14.00169 -13.94430 -13.57397 -13.24291 -12.91863 -12.72440 -12.66572 -12.32184 -11.76386 -11.32343 -11.27551 -11.07635 -10.95133 -10.80561 -10.72505 -10.45252 -10.39210 -10.28449 -10.18399 -9.88996 -9.88462 -9.65781 -8.52135 -8.41807 -7.54341 -6.63180 -5.81148 -3.32063 1.91748 2.01643 2.20272 2.55068 3.34845 3.43721 3.48211 3.63830 4.27613 4.33104 4.51113 4.97790 5.15243 5.28171 5.30789 5.33922 5.56349 5.63084 5.75884 5.83627 5.87522 5.97058 6.05101 6.15759 6.25180 6.30344 6.45946 6.53041 6.62419 6.68896 6.75452 6.78617 7.04386 7.06605 7.26376 7.28525 7.33059 7.42220 7.70405 7.79195 7.81799 8.48966 9.16290 9.80399 10.36941 11.19442 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.004885 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.146351 B = 5729.911224 C = 6998.827493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.172 3.828 4 O -0.317 6.317 5 C 0.100 3.900 6 C -0.151 4.151 7 C -0.060 4.060 8 C -0.099 4.099 9 C 0.173 3.827 10 N -0.577 5.577 11 C -0.251 4.251 12 H 0.060 0.940 13 C 0.010 3.990 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.286 1.286 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.149 3.851 20 C -0.140 4.140 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.212 4.212 24 H 0.223 0.777 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.032 0.968 31 H 0.255 0.745 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.115 0.885 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -7.357 6.109 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.191 4.191 3 C 0.098 3.902 4 O -0.232 6.232 5 C 0.056 3.944 6 C -0.169 4.169 7 C -0.079 4.079 8 C -0.102 4.102 9 C 0.047 3.953 10 N -0.295 5.295 11 C -0.380 4.380 12 H 0.078 0.922 13 C -0.189 4.189 14 N -0.527 5.527 15 Si 0.717 3.283 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.023 3.977 20 C -0.180 4.180 21 C -0.205 4.205 22 C -0.104 4.104 23 C -0.231 4.231 24 H 0.240 0.760 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.133 0.867 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.512 -7.241 5.837 14.036 hybrid contribution -0.393 0.721 -0.234 0.853 sum -10.905 -6.521 5.604 13.887 Atomic orbital electron populations 1.24961 0.95817 0.99276 0.98901 1.22467 0.93728 1.01370 1.01547 1.19191 0.84492 0.94197 0.92338 1.86050 1.20444 1.61690 1.55015 1.18788 0.80692 0.97811 0.97151 1.20396 0.95458 1.01111 0.99976 1.20959 0.91143 0.97229 0.98551 1.21207 1.00076 0.94454 0.94441 1.20035 0.84766 0.90005 1.00495 1.43799 1.71484 1.05206 1.09031 1.19045 1.41123 0.83570 0.94309 0.92195 1.25009 0.97871 0.97219 0.98847 1.69975 1.37863 1.35505 1.09389 0.86533 0.79054 0.84008 0.78742 1.21289 1.21352 1.20223 1.20924 0.91826 0.97354 0.87571 1.22085 1.00082 1.01473 0.94356 1.21758 0.99908 1.00474 0.98388 1.20844 0.93495 0.98395 0.97699 1.21054 0.94675 1.04427 1.02895 0.75998 0.89818 0.89787 0.86175 0.85448 0.87483 0.94952 0.93507 0.94107 0.94948 0.93043 0.91873 0.93894 0.93455 0.93715 0.86696 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 19.25 29.55 0.57 -1.11 16 2 C -0.19 -2.28 13.73 -37.12 -0.51 -2.79 16 3 C 0.17 2.08 5.21 34.37 0.18 2.26 16 4 O -0.32 -5.01 10.09 -19.42 -0.20 -5.21 16 5 C 0.10 1.69 6.69 -39.22 -0.26 1.43 16 6 C -0.15 -2.74 9.99 -39.43 -0.39 -3.13 16 7 C -0.06 -1.20 9.69 -39.61 -0.38 -1.59 16 8 C -0.10 -2.00 5.46 -104.60 -0.57 -2.57 16 9 C 0.17 3.91 5.42 -5.19 -0.03 3.89 16 10 N -0.58 -13.79 2.43 -174.61 -0.42 -14.21 16 11 C -0.25 -6.62 9.48 -15.06 -0.14 -6.77 16 12 H 0.06 1.61 7.93 -52.49 -0.42 1.20 16 13 C 0.01 0.27 4.95 -17.43 -0.09 0.19 16 14 N -0.88 -24.33 11.34 55.49 0.63 -23.70 16 15 Si 0.89 21.00 29.61 -169.99 -5.03 15.97 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.15 3.08 5.67 -4.04 -0.02 3.06 16 20 C -0.14 -2.70 6.26 -26.73 -0.17 -2.87 16 21 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 22 C -0.09 -1.50 9.69 -39.60 -0.38 -1.88 16 23 C -0.21 -3.36 9.04 -39.43 -0.36 -3.71 16 24 H 0.22 1.23 7.80 -54.08 -0.42 0.80 16 25 H 0.08 0.86 7.66 -51.93 -0.40 0.47 16 26 H 0.08 0.90 7.66 -51.93 -0.40 0.50 16 27 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 28 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 29 H 0.11 2.73 5.28 -51.93 -0.27 2.46 16 30 H 0.03 0.69 8.01 -51.93 -0.42 0.28 16 31 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -29.00 345.19 -8.02 -37.02 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.01 Total: 2.41 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.19 Total: -17.48 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.20 Total: -37.92 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.00 -8.02 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.890 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds