Wall clock time and date at job start Mon Mar 30 2020 02:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42907 * 109.47055 * 131.98268 * 3 2 1 5 5 C 1.35898 * 117.00306 * 179.97438 * 4 3 2 6 6 C 1.38727 * 120.05741 * 180.02562 * 5 4 3 7 7 C 1.38149 * 119.94387 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.05657 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.94178 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46887 * 90.00341 * 9 8 7 11 11 C 1.36933 * 119.99849 * 270.26894 * 10 9 8 12 12 H 1.08002 * 120.00080 * 145.79384 * 11 10 9 13 13 C 1.38812 * 120.00103 * 325.79494 * 11 10 9 14 14 N 1.31614 * 120.00204 * 336.81644 * 13 11 10 15 15 Si 1.86801 * 119.99803 * 156.81059 * 13 11 10 16 16 H 1.48503 * 109.46958 * 90.00219 * 15 13 11 17 17 H 1.48496 * 109.47354 * 209.99969 * 15 13 11 18 18 H 1.48493 * 109.47380 * 330.00445 * 15 13 11 19 19 C 1.46505 * 119.99894 * 89.99983 * 10 9 8 20 20 C 1.52996 * 109.47163 * 89.92504 * 19 10 9 21 21 C 1.53003 * 109.46886 * 179.97438 * 20 19 10 22 22 C 1.38265 * 120.11062 * 0.25377 * 8 7 6 23 23 C 1.38154 * 120.05602 * 359.45593 * 22 8 7 24 24 H 4.38450 * 5.44396 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47593 * 11.98673 * 3 2 1 26 26 H 1.09000 * 109.47319 * 251.97752 * 3 2 1 27 27 H 1.08003 * 120.02668 * 359.97438 * 6 5 4 28 28 H 1.08000 * 119.97078 * 179.97438 * 7 6 5 29 29 H 1.08994 * 109.47707 * 329.99769 * 9 8 7 30 30 H 1.08998 * 109.46526 * 209.99947 * 9 8 7 31 31 H 0.96999 * 119.99937 * 179.97438 * 14 13 11 32 32 H 1.09003 * 109.46517 * 209.92090 * 19 10 9 33 33 H 1.09003 * 109.47354 * 329.91896 * 19 10 9 34 34 H 1.09003 * 109.47066 * 299.99250 * 20 19 10 35 35 H 1.08996 * 109.47185 * 59.99679 * 20 19 10 36 36 H 1.09006 * 109.47002 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.47014 * 299.99634 * 21 20 19 38 38 H 1.08996 * 109.47408 * 59.99892 * 21 20 19 39 39 H 1.08001 * 119.97598 * 179.70002 * 22 8 7 40 40 H 1.07996 * 120.02783 * 180.24611 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1219 0.9021 -1.0015 5 6 4.4691 1.0223 -1.1336 6 6 5.0002 1.8801 -2.0858 7 6 6.3701 2.0001 -2.2184 8 6 7.2116 1.2657 -1.4034 9 6 8.7055 1.3981 -1.5507 10 7 9.1898 2.4671 -0.6738 11 6 9.2550 3.7545 -1.1355 12 1 9.0636 4.5791 -0.4648 13 6 9.5672 3.9999 -2.4657 14 7 10.2295 3.1012 -3.1628 15 14 9.0471 5.6055 -3.2662 16 1 10.1184 6.6181 -3.0864 17 1 8.8144 5.3833 -4.7159 18 1 7.7951 6.0917 -2.6328 19 6 9.5986 2.1596 0.6991 20 6 11.0886 1.8130 0.7220 21 6 11.5157 1.4925 2.1558 22 6 6.6848 0.4057 -0.4576 23 6 5.3156 0.2866 -0.3170 24 1 -1.0501 -0.0004 0.0001 25 1 3.0099 -1.0044 -0.2134 26 1 3.0092 0.3188 0.9772 27 1 4.3432 2.4531 -2.7234 28 1 6.7840 2.6674 -2.9598 29 1 8.9488 1.6388 -2.5855 30 1 9.1825 0.4576 -1.2747 31 1 10.4472 3.2725 -4.0924 32 1 9.4173 3.0262 1.3348 33 1 9.0225 1.3111 1.0684 34 1 11.2699 0.9464 0.0862 35 1 11.6647 2.6615 0.3527 36 1 12.5774 1.2461 2.1722 37 1 11.3345 2.3594 2.7912 38 1 10.9397 0.6443 2.5255 39 1 7.3442 -0.1706 0.1745 40 1 4.9046 -0.3823 0.4247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:22 Heat of formation + Delta-G solvation = 43.170198 kcal Electronic energy + Delta-G solvation = -20392.868389 eV Core-core repulsion = 17367.578099 eV Total energy + Delta-G solvation = -3025.290290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08175 -39.00661 -37.39649 -34.62853 -34.38244 -32.86347 -31.87930 -31.10453 -28.66177 -27.29524 -26.76455 -23.80856 -23.56655 -22.24667 -21.42055 -19.36335 -19.19702 -18.67243 -17.01615 -16.97580 -16.61339 -16.20693 -15.84817 -15.67650 -15.26412 -14.96283 -14.82965 -14.32494 -14.13783 -13.84590 -13.61856 -13.35911 -13.10599 -12.71287 -12.64802 -12.48218 -12.38903 -12.07472 -11.99037 -11.91717 -11.77886 -11.69333 -11.43369 -11.29524 -11.10073 -10.50520 -9.82765 -8.94474 -8.56934 -7.81173 -5.35542 0.51583 0.59771 1.31035 1.42827 1.47542 1.55920 1.76678 2.51968 2.68532 2.91074 3.27489 3.45626 3.88800 3.93097 4.05688 4.18779 4.30197 4.31944 4.34647 4.48313 4.57150 4.62444 4.72026 4.80459 4.85959 4.93935 4.95912 4.99263 5.20054 5.22959 5.29744 5.39427 5.49024 5.55168 5.62918 5.65051 5.81768 5.92791 6.04669 6.47059 6.51419 6.54689 7.19033 7.90207 8.40700 9.15656 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016321 B = 0.004885 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.146351 B = 5729.911224 C = 6998.827493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.247 4.247 3 C 0.165 3.835 4 O -0.331 6.331 5 C 0.108 3.892 6 C -0.162 4.162 7 C -0.078 4.078 8 C -0.120 4.120 9 C 0.180 3.820 10 N -0.591 5.591 11 C -0.258 4.258 12 H 0.050 0.950 13 C -0.028 4.028 14 N -0.910 5.910 15 Si 0.939 3.061 16 H -0.285 1.285 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.147 3.853 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.081 4.081 23 C -0.199 4.199 24 H 0.260 0.740 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.251 0.749 32 H 0.037 0.963 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.028 0.972 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.558 -8.706 8.157 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.247 4.247 3 C 0.091 3.909 4 O -0.246 6.246 5 C 0.063 3.937 6 C -0.180 4.180 7 C -0.097 4.097 8 C -0.122 4.122 9 C 0.054 3.946 10 N -0.310 5.310 11 C -0.388 4.388 12 H 0.067 0.933 13 C -0.225 4.225 14 N -0.555 5.555 15 Si 0.767 3.233 16 H -0.212 1.212 17 H -0.215 1.215 18 H -0.202 1.202 19 C 0.022 3.978 20 C -0.171 4.171 21 C -0.195 4.195 22 C -0.100 4.100 23 C -0.217 4.217 24 H 0.276 0.724 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.146 0.854 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.618 -8.601 7.906 17.196 hybrid contribution 0.077 1.063 -0.810 1.339 sum -12.541 -7.538 7.097 16.262 Atomic orbital electron populations 1.25930 0.96720 0.96861 0.96434 1.22802 0.94452 1.03643 1.03843 1.19483 0.85081 0.94351 0.91965 1.86033 1.19423 1.62766 1.56406 1.18823 0.81675 0.96874 0.96342 1.20445 0.94692 1.01955 1.00929 1.20793 0.92265 0.97788 0.98847 1.20958 0.98427 0.96511 0.96353 1.19804 0.86708 0.89607 0.98462 1.43992 1.72258 1.04621 1.10177 1.19156 1.40507 0.84672 0.94475 0.93257 1.25508 0.98220 0.99563 0.99239 1.70084 1.39202 1.36952 1.09234 0.85727 0.78506 0.81250 0.77770 1.21197 1.21462 1.20156 1.21046 0.92839 0.98035 0.85909 1.21933 0.98781 0.99447 0.96970 1.21661 1.00991 1.01583 0.95249 1.21013 0.94710 0.97488 0.96791 1.21397 0.93655 1.03912 1.02772 0.72423 0.87990 0.88325 0.85434 0.87960 0.90820 0.94426 0.93943 0.94471 0.92665 0.94289 0.95268 0.92614 0.92689 0.91705 0.84638 0.82520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 19.25 74.32 1.43 -0.88 16 2 C -0.25 -5.27 13.73 31.13 0.43 -4.84 16 3 C 0.16 3.51 5.21 70.18 0.37 3.87 16 4 O -0.33 -9.78 10.09 -92.40 -0.93 -10.71 16 5 C 0.11 3.45 6.69 22.50 0.15 3.61 16 6 C -0.16 -5.86 9.99 22.37 0.22 -5.64 16 7 C -0.08 -3.23 9.69 22.25 0.22 -3.01 16 8 C -0.12 -4.88 5.46 -19.85 -0.11 -4.98 16 9 C 0.18 8.36 5.42 85.63 0.46 8.82 16 10 N -0.59 -28.85 2.43 -706.34 -1.72 -30.57 16 11 C -0.26 -14.04 9.48 84.03 0.80 -13.24 16 12 H 0.05 2.74 7.93 -2.91 -0.02 2.72 16 13 C -0.03 -1.53 4.95 84.86 0.42 -1.11 16 14 N -0.91 -52.17 11.34 21.65 0.25 -51.93 16 15 Si 0.94 44.63 29.61 68.60 2.03 46.66 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 C 0.15 6.00 5.67 86.38 0.49 6.49 16 20 C -0.13 -5.05 6.26 30.59 0.19 -4.86 16 21 C -0.14 -3.88 9.91 71.98 0.71 -3.16 16 22 C -0.08 -2.69 9.69 22.26 0.22 -2.47 16 23 C -0.20 -5.69 9.04 22.37 0.20 -5.49 16 24 H 0.26 1.70 7.80 -4.41 -0.03 1.67 16 25 H 0.10 1.75 7.66 -2.39 -0.02 1.73 16 26 H 0.10 1.77 7.66 -2.39 -0.02 1.75 16 27 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.07 3.96 5.28 -2.39 -0.01 3.95 16 30 H 0.04 1.64 8.01 -2.39 -0.02 1.62 16 31 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.04 1.52 8.04 -2.39 -0.02 1.51 16 33 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 40 H 0.16 3.19 6.30 -2.91 -0.02 3.17 16 Total: -1.00 -64.85 345.19 6.82 -58.03 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 1.00 Total: 15.41 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 6.20 Total: -26.88 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -1.47 Total: -82.50 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.93 Total: -10.71 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.85 6.82 -58.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.198 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds