Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 H 1.09009 * 109.47018 * 183.90997 * 3 2 1 5 5 C 1.50695 * 109.47243 * 303.90830 * 3 2 1 6 6 H 1.08007 * 119.99902 * 115.41462 * 5 3 2 7 7 C 1.37873 * 120.00216 * 295.42068 * 5 3 2 8 8 N 1.31513 * 120.00248 * 354.09853 * 7 5 3 9 9 Si 1.86805 * 120.00282 * 174.10394 * 7 5 3 10 10 H 1.48495 * 109.47478 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46655 * 299.99680 * 9 7 5 12 12 H 1.48497 * 109.47250 * 59.99665 * 9 7 5 13 13 N 1.46899 * 109.47271 * 63.91393 * 3 2 1 14 14 C 1.46897 * 111.00272 * 80.84527 * 13 3 2 15 15 C 1.50702 * 109.46851 * 184.79510 * 14 13 3 16 16 C 1.33992 * 126.90852 * 90.03019 * 15 14 13 17 17 C 1.50702 * 124.92345 * 359.94884 * 16 15 14 18 18 O 1.34450 * 110.15192 * 179.97438 * 16 15 14 19 19 C 1.34806 * 110.89333 * 359.97438 * 18 16 15 20 20 C 1.38940 * 133.49086 * 179.97438 * 19 18 16 21 21 C 1.37853 * 119.81226 * 180.02562 * 20 19 18 22 22 C 1.38739 * 120.68540 * 0.02562 * 21 20 19 23 23 C 1.36746 * 120.42005 * 0.02562 * 22 21 20 24 24 C 1.39401 * 119.71219 * 359.67384 * 23 22 21 25 25 H 1.08992 * 109.46989 * 304.86936 * 1 2 3 26 26 H 1.09000 * 109.46741 * 64.87030 * 1 2 3 27 27 H 1.09005 * 109.47039 * 184.86714 * 1 2 3 28 28 H 1.08998 * 109.47224 * 239.99894 * 2 1 3 29 29 H 1.09000 * 109.46912 * 119.99786 * 2 1 3 30 30 H 0.97001 * 119.99544 * 354.18982 * 8 7 5 31 31 H 1.00908 * 110.99588 * 316.88709 * 13 3 2 32 32 H 1.08995 * 109.46908 * 304.79069 * 14 13 3 33 33 H 1.09002 * 109.47204 * 64.79478 * 14 13 3 34 34 H 1.08998 * 109.46664 * 90.00654 * 17 16 15 35 35 H 1.09000 * 109.46831 * 210.00395 * 17 16 15 36 36 H 1.09001 * 109.47149 * 330.00232 * 17 16 15 37 37 H 1.07995 * 120.09696 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.65594 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.79444 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.13682 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4432 -0.0701 5 6 1.4602 2.1803 -1.1791 6 1 0.7879 3.0103 -1.0193 7 6 1.7878 1.7957 -2.4620 8 7 2.6939 0.8628 -2.6577 9 14 0.9447 2.5997 -3.9222 10 1 1.4707 2.0143 -5.1815 11 1 -0.5192 2.3641 -3.8399 12 1 1.2127 4.0602 -3.9061 13 7 1.6291 2.1072 1.2439 14 6 2.5295 1.7568 2.3504 15 6 2.0109 2.3600 3.6303 16 6 1.1615 1.7958 4.4995 17 6 0.5574 0.4234 4.3483 18 8 0.9260 2.6316 5.5260 19 6 1.6116 3.7825 5.3758 20 6 1.7129 4.9413 6.1357 21 6 2.5182 5.9744 5.7060 22 6 3.2306 5.8706 4.5200 23 6 3.1439 4.7391 3.7570 24 6 2.3395 3.6815 4.1785 25 1 -0.3633 0.5875 0.8431 26 1 -0.3633 0.4364 -0.9304 27 1 -0.3633 -1.0240 0.0872 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1920 0.5053 -1.9060 31 1 0.6715 1.8858 1.4728 32 1 2.5752 0.6725 2.4522 33 1 3.5270 2.1447 2.1439 34 1 1.2051 -0.3130 4.8238 35 1 -0.4239 0.4043 4.8224 36 1 0.4540 0.1867 3.2893 37 1 1.1616 5.0329 7.0598 38 1 2.5948 6.8742 6.2985 39 1 3.8576 6.6886 4.1973 40 1 3.7008 4.6630 2.8348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121282431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = 16.237115 kcal Electronic energy + Delta-G solvation = -20913.028703 eV Core-core repulsion = 17886.570507 eV Total energy + Delta-G solvation = -3026.458196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35627 -37.80529 -37.02821 -34.19374 -32.02068 -31.15724 -30.60933 -30.11842 -27.35406 -26.01876 -23.97345 -23.53541 -22.84669 -21.56949 -19.83988 -19.47384 -17.14438 -16.87008 -16.42922 -16.16132 -15.34608 -14.82972 -14.16472 -14.00624 -13.66030 -13.60974 -13.58176 -13.17270 -12.92714 -12.73282 -12.43248 -12.33195 -12.10658 -11.93148 -11.49590 -11.38840 -11.10362 -10.78578 -10.74172 -10.29723 -10.09878 -10.04549 -9.88469 -9.73381 -8.60411 -8.52295 -8.28307 -7.94272 -7.30304 -6.28691 -3.98372 1.00660 1.44974 2.42547 2.78801 3.47106 3.48299 3.66888 3.81736 4.50935 4.55571 4.72584 4.97125 5.04266 5.20155 5.22004 5.34308 5.39533 5.41059 5.44820 5.56760 5.69762 5.77732 5.86159 6.00835 6.07858 6.09828 6.21091 6.30385 6.35672 6.38815 6.54800 6.62492 6.65159 6.77228 6.96280 7.04090 7.24732 7.27498 7.30569 7.91072 8.26432 8.44882 8.65428 8.93528 9.69243 11.06838 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004857 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.950851 B = 5763.384071 C = 6621.149004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.153 4.153 3 C 0.204 3.796 4 H 0.026 0.974 5 C -0.569 4.569 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.670 5.670 14 C 0.126 3.874 15 C -0.154 4.154 16 C 0.023 3.977 17 C -0.078 4.078 18 O -0.196 6.196 19 C 0.046 3.954 20 C -0.113 4.113 21 C -0.099 4.099 22 C -0.142 4.142 23 C -0.058 4.058 24 C -0.108 4.108 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.328 0.672 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 3.486 16.141 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.193 4.193 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.608 4.608 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.216 1.216 13 N -0.301 5.301 14 C -0.003 4.003 15 C -0.156 4.156 16 C -0.025 4.025 17 C -0.134 4.134 18 O -0.098 6.098 19 C -0.001 4.001 20 C -0.131 4.131 21 C -0.117 4.117 22 C -0.160 4.160 23 C -0.076 4.076 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.469 3.971 14.542 15.146 hybrid contribution -0.072 -0.806 1.803 1.976 sum -1.541 3.166 16.344 16.719 Atomic orbital electron populations 1.21551 0.96814 0.98198 1.01987 1.22230 0.96079 1.01415 0.99552 1.19340 0.95452 0.88410 0.87257 0.95615 1.21819 1.30421 1.17566 0.90972 0.92751 1.25679 0.96698 0.95944 1.00093 1.70802 1.22400 1.26818 1.35325 0.83616 0.75631 0.75612 0.75872 1.20999 1.21574 1.21557 1.60873 1.04781 1.62407 1.02041 1.20260 0.97572 0.95900 0.86586 1.21005 1.02071 0.93829 0.98657 1.22084 0.99527 0.93618 0.87295 1.20419 1.00969 0.87883 1.04156 1.83899 1.59274 1.23297 1.43353 1.19598 0.95732 0.87741 0.97000 1.19841 1.02698 0.90308 1.00288 1.20857 0.96409 0.97706 0.96753 1.20758 1.01467 0.98259 0.95501 1.20402 0.96606 0.91396 0.99209 1.19789 1.00429 0.95443 0.95260 0.94660 0.91325 0.95426 0.91193 0.96142 0.92089 0.85284 0.95087 0.90893 0.89915 0.90299 0.89008 0.85503 0.85150 0.85548 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.38 37.16 0.35 -2.23 16 2 C -0.15 -3.37 5.46 -26.73 -0.15 -3.52 16 3 C 0.20 4.91 1.95 -68.87 -0.13 4.77 16 4 H 0.03 0.69 7.31 -51.92 -0.38 0.31 16 5 C -0.57 -15.43 7.42 -34.44 -0.26 -15.69 16 6 H 0.05 1.53 7.82 -52.48 -0.41 1.12 16 7 C 0.02 0.53 5.27 -17.82 -0.09 0.44 16 8 N -0.92 -26.67 12.87 55.43 0.71 -25.95 16 9 Si 1.06 24.95 29.91 -169.99 -5.08 19.87 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 13 N -0.67 -14.18 6.24 -109.22 -0.68 -14.86 16 14 C 0.13 2.30 5.59 -4.98 -0.03 2.27 16 15 C -0.15 -2.61 5.81 -102.66 -0.60 -3.21 16 16 C 0.02 0.35 7.23 -35.80 -0.26 0.09 16 17 C -0.08 -0.91 10.00 36.01 0.36 -0.55 16 18 O -0.20 -3.09 10.58 3.91 0.04 -3.05 16 19 C 0.05 0.72 7.42 -38.47 -0.29 0.44 16 20 C -0.11 -1.43 10.07 -39.46 -0.40 -1.82 16 21 C -0.10 -1.12 10.01 -39.54 -0.40 -1.51 16 22 C -0.14 -1.75 9.98 -39.94 -0.40 -2.15 16 23 C -0.06 -0.88 10.05 -39.69 -0.40 -1.28 16 24 C -0.11 -1.81 6.38 -105.16 -0.67 -2.48 16 25 H 0.03 0.65 6.24 -51.93 -0.32 0.32 16 26 H 0.07 1.54 7.30 -51.93 -0.38 1.16 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 1.72 6.27 -51.93 -0.33 1.40 16 29 H 0.02 0.40 7.04 -51.93 -0.37 0.04 16 30 H 0.27 7.75 6.05 -40.82 -0.25 7.50 16 31 H 0.33 6.73 6.43 -39.29 -0.25 6.47 16 32 H 0.03 0.54 6.58 -51.93 -0.34 0.20 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.13 7.68 -51.93 -0.40 0.73 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 40 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -30.25 326.48 -9.05 -39.30 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.60 Total: 6.22 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -3.35 Total: -26.44 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.03 Total: -40.81 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.25 -9.05 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121282431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.536 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds