Wall clock time and date at job start Mon Mar 30 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 H 1.09009 * 109.47018 * 183.90997 * 3 2 1 5 5 C 1.50695 * 109.47243 * 303.90830 * 3 2 1 6 6 H 1.08007 * 119.99902 * 115.41462 * 5 3 2 7 7 C 1.37873 * 120.00216 * 295.42068 * 5 3 2 8 8 N 1.31513 * 120.00248 * 354.09853 * 7 5 3 9 9 Si 1.86805 * 120.00282 * 174.10394 * 7 5 3 10 10 H 1.48495 * 109.47478 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46655 * 299.99680 * 9 7 5 12 12 H 1.48497 * 109.47250 * 59.99665 * 9 7 5 13 13 N 1.46899 * 109.47271 * 63.91393 * 3 2 1 14 14 C 1.46897 * 111.00272 * 80.84527 * 13 3 2 15 15 C 1.50702 * 109.46851 * 184.79510 * 14 13 3 16 16 C 1.33992 * 126.90852 * 90.03019 * 15 14 13 17 17 C 1.50702 * 124.92345 * 359.94884 * 16 15 14 18 18 O 1.34450 * 110.15192 * 179.97438 * 16 15 14 19 19 C 1.34806 * 110.89333 * 359.97438 * 18 16 15 20 20 C 1.38940 * 133.49086 * 179.97438 * 19 18 16 21 21 C 1.37853 * 119.81226 * 180.02562 * 20 19 18 22 22 C 1.38739 * 120.68540 * 0.02562 * 21 20 19 23 23 C 1.36746 * 120.42005 * 0.02562 * 22 21 20 24 24 C 1.39401 * 119.71219 * 359.67384 * 23 22 21 25 25 H 1.08992 * 109.46989 * 304.86936 * 1 2 3 26 26 H 1.09000 * 109.46741 * 64.87030 * 1 2 3 27 27 H 1.09005 * 109.47039 * 184.86714 * 1 2 3 28 28 H 1.08998 * 109.47224 * 239.99894 * 2 1 3 29 29 H 1.09000 * 109.46912 * 119.99786 * 2 1 3 30 30 H 0.97001 * 119.99544 * 354.18982 * 8 7 5 31 31 H 1.00908 * 110.99588 * 316.88709 * 13 3 2 32 32 H 1.08995 * 109.46908 * 304.79069 * 14 13 3 33 33 H 1.09002 * 109.47204 * 64.79478 * 14 13 3 34 34 H 1.08998 * 109.46664 * 90.00654 * 17 16 15 35 35 H 1.09000 * 109.46831 * 210.00395 * 17 16 15 36 36 H 1.09001 * 109.47149 * 330.00232 * 17 16 15 37 37 H 1.07995 * 120.09696 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.65594 * 179.97438 * 21 20 19 39 39 H 1.08003 * 119.79444 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.13682 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1278 1.4432 -0.0701 5 6 1.4602 2.1803 -1.1791 6 1 0.7879 3.0103 -1.0193 7 6 1.7878 1.7957 -2.4620 8 7 2.6939 0.8628 -2.6577 9 14 0.9447 2.5997 -3.9222 10 1 1.4707 2.0143 -5.1815 11 1 -0.5192 2.3641 -3.8399 12 1 1.2127 4.0602 -3.9061 13 7 1.6291 2.1072 1.2439 14 6 2.5295 1.7568 2.3504 15 6 2.0109 2.3600 3.6303 16 6 1.1615 1.7958 4.4995 17 6 0.5574 0.4234 4.3483 18 8 0.9260 2.6316 5.5260 19 6 1.6116 3.7825 5.3758 20 6 1.7129 4.9413 6.1357 21 6 2.5182 5.9744 5.7060 22 6 3.2306 5.8706 4.5200 23 6 3.1439 4.7391 3.7570 24 6 2.3395 3.6815 4.1785 25 1 -0.3633 0.5875 0.8431 26 1 -0.3633 0.4364 -0.9304 27 1 -0.3633 -1.0240 0.0872 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1920 0.5053 -1.9060 31 1 0.6715 1.8858 1.4728 32 1 2.5752 0.6725 2.4522 33 1 3.5270 2.1447 2.1439 34 1 1.2051 -0.3130 4.8238 35 1 -0.4239 0.4043 4.8224 36 1 0.4540 0.1867 3.2893 37 1 1.1616 5.0329 7.0598 38 1 2.5948 6.8742 6.2985 39 1 3.8576 6.6886 4.1973 40 1 3.7008 4.6630 2.8348 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121282431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:27 Heat of formation + Delta-G solvation = -0.979708 kcal Electronic energy + Delta-G solvation = -20913.775281 eV Core-core repulsion = 17886.570507 eV Total energy + Delta-G solvation = -3027.204773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.49222 -38.84430 -38.78048 -35.70830 -33.79530 -32.27762 -32.02080 -31.31028 -28.73289 -27.56840 -25.74875 -25.28357 -23.91957 -22.60872 -21.49045 -20.93359 -18.88495 -17.96815 -17.86503 -17.34759 -16.54217 -16.23328 -15.89208 -15.49875 -15.43228 -14.97445 -14.66602 -14.35719 -14.33398 -14.06448 -13.86399 -13.57013 -13.32964 -13.17780 -13.10243 -12.83833 -12.61690 -12.54727 -12.04966 -11.94979 -11.92280 -11.77236 -11.66788 -10.91742 -10.61275 -10.39804 -9.59490 -9.16523 -8.93762 -8.49092 -6.19741 -0.05633 0.38473 1.25374 1.55736 1.62178 1.70104 1.81484 2.60546 2.75976 3.26018 3.43553 3.54636 3.70786 3.89735 4.08288 4.12879 4.26668 4.33436 4.35347 4.41910 4.44976 4.53640 4.56428 4.59293 4.62422 4.74984 4.85304 4.94089 5.03492 5.12073 5.22906 5.28836 5.34749 5.42759 5.47126 5.54169 5.55161 5.73815 5.96837 6.18037 6.21339 6.53777 6.72379 6.80063 7.55058 8.85961 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.004857 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.950851 B = 5763.384071 C = 6621.149004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.144 4.144 3 C 0.208 3.792 4 H -0.007 1.007 5 C -0.575 4.575 6 H 0.040 0.960 7 C -0.025 4.025 8 N -0.938 5.938 9 Si 1.106 2.894 10 H -0.286 1.286 11 H -0.272 1.272 12 H -0.279 1.279 13 N -0.676 5.676 14 C 0.138 3.862 15 C -0.189 4.189 16 C 0.034 3.966 17 C -0.078 4.078 18 O -0.200 6.200 19 C 0.022 3.978 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.090 4.090 24 C -0.137 4.137 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.257 0.743 31 H 0.333 0.667 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.153 0.847 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 4.378 18.140 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.184 4.184 3 C 0.099 3.901 4 H 0.010 0.990 5 C -0.614 4.614 6 H 0.059 0.941 7 C -0.223 4.223 8 N -0.577 5.577 9 Si 0.930 3.070 10 H -0.212 1.212 11 H -0.197 1.197 12 H -0.205 1.205 13 N -0.308 5.308 14 C 0.010 3.990 15 C -0.191 4.191 16 C -0.014 4.014 17 C -0.134 4.134 18 O -0.102 6.102 19 C -0.024 4.024 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.151 4.151 23 C -0.109 4.109 24 C -0.138 4.138 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.153 0.847 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.171 0.829 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.794 4.869 16.570 17.496 hybrid contribution 0.389 -0.997 1.302 1.686 sum -2.405 3.872 17.873 18.445 Atomic orbital electron populations 1.21458 0.94993 1.00087 1.01211 1.22061 0.97590 0.99545 0.99159 1.19113 0.93256 0.89779 0.87922 0.98950 1.22054 1.29803 1.17224 0.92316 0.94126 1.26904 0.96658 0.95856 1.02894 1.70905 1.23613 1.28244 1.34890 0.83057 0.75714 0.75264 0.72990 1.21211 1.19724 1.20480 1.60714 1.05499 1.62518 1.02091 1.20049 0.96115 0.96411 0.86456 1.20907 1.04342 0.95021 0.98839 1.22623 0.98081 0.94380 0.86319 1.20585 1.02357 0.86213 1.04266 1.83895 1.59375 1.23557 1.43399 1.20058 0.96294 0.88636 0.97436 1.20351 1.02536 0.89247 1.00824 1.21374 0.94584 0.98614 0.96188 1.21148 1.00991 0.97644 0.95321 1.20509 0.97770 0.92765 0.99823 1.20054 1.01612 0.95822 0.96334 0.93001 0.94046 0.92587 0.94114 0.93852 0.93238 0.84723 0.94118 0.92666 0.87804 0.88195 0.89545 0.82610 0.80868 0.82885 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 9.38 71.98 0.68 -4.05 16 2 C -0.14 -6.39 5.46 30.59 0.17 -6.22 16 3 C 0.21 10.35 1.95 44.17 0.09 10.44 16 4 H -0.01 -0.41 7.31 -2.38 -0.02 -0.43 16 5 C -0.58 -31.99 7.42 25.60 0.19 -31.80 16 6 H 0.04 2.33 7.82 -2.91 -0.02 2.30 16 7 C -0.03 -1.41 5.27 84.65 0.45 -0.97 16 8 N -0.94 -56.11 12.87 21.45 0.28 -55.84 16 9 Si 1.11 50.62 29.91 68.60 2.05 52.68 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.68 -29.33 6.24 -499.47 -3.12 -32.45 16 14 C 0.14 5.21 5.59 85.56 0.48 5.69 16 15 C -0.19 -6.52 5.81 -18.59 -0.11 -6.63 16 16 C 0.03 1.02 7.23 24.72 0.18 1.20 16 17 C -0.08 -1.67 10.00 71.24 0.71 -0.96 16 18 O -0.20 -6.08 10.58 -8.91 -0.09 -6.18 16 19 C 0.02 0.68 7.42 22.99 0.17 0.85 16 20 C -0.11 -2.51 10.07 22.35 0.23 -2.29 16 21 C -0.09 -1.72 10.01 22.30 0.22 -1.49 16 22 C -0.13 -3.05 9.98 22.04 0.22 -2.83 16 23 C -0.09 -2.79 10.05 22.20 0.22 -2.57 16 24 C -0.14 -4.65 6.38 -20.21 -0.13 -4.78 16 25 H 0.05 1.84 6.24 -2.39 -0.01 1.83 16 26 H 0.04 1.84 7.30 -2.39 -0.02 1.82 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.04 2.05 6.27 -2.39 -0.01 2.03 16 29 H 0.04 1.70 7.04 -2.39 -0.02 1.68 16 30 H 0.26 15.53 6.05 -92.71 -0.56 14.97 16 31 H 0.33 13.69 6.43 -89.69 -0.58 13.11 16 32 H 0.04 1.43 6.58 -2.39 -0.02 1.41 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.96 7.68 -2.39 -0.02 1.94 16 37 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -67.81 326.48 3.55 -64.27 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.67 Total: 23.93 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 3.76 Total: -46.41 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.84 Total: -88.29 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.09 Total: -6.18 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.68 kcal Total: -67.81 3.55 -64.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121282431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.285 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds