Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47668 * 304.24265 * 3 2 1 5 5 C 1.50708 * 109.46918 * 184.24809 * 3 2 1 6 6 H 1.08007 * 119.99503 * 240.00257 * 5 3 2 7 7 C 1.37874 * 120.00270 * 59.99323 * 5 3 2 8 8 N 1.31510 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99986 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47208 * 60.00623 * 9 7 5 11 11 H 1.48500 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47212 * 300.00163 * 9 7 5 13 13 N 1.46893 * 109.47351 * 64.24799 * 3 2 1 14 14 C 1.46902 * 111.00087 * 205.85057 * 13 3 2 15 15 C 1.50695 * 109.47515 * 174.80448 * 14 13 3 16 16 C 1.34003 * 126.91048 * 270.03229 * 15 14 13 17 17 C 1.50699 * 124.92209 * 359.97438 * 16 15 14 18 18 O 1.34452 * 110.15353 * 179.97438 * 16 15 14 19 19 C 1.34813 * 110.89138 * 359.97438 * 18 16 15 20 20 C 1.38939 * 133.49472 * 179.97438 * 19 18 16 21 21 C 1.37849 * 119.81527 * 180.02562 * 20 19 18 22 22 C 1.38745 * 120.68733 * 0.02562 * 21 20 19 23 23 C 1.36736 * 120.41621 * 0.02562 * 22 21 20 24 24 C 1.39413 * 119.71720 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47183 * 174.89526 * 1 2 3 26 26 H 1.08996 * 109.47159 * 294.89173 * 1 2 3 27 27 H 1.08995 * 109.46653 * 54.89364 * 1 2 3 28 28 H 1.08995 * 109.47125 * 239.99336 * 2 1 3 29 29 H 1.09005 * 109.46646 * 120.00107 * 2 1 3 30 30 H 0.97004 * 119.99999 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00466 * 81.89974 * 13 3 2 32 32 H 1.09003 * 109.46724 * 54.80776 * 14 13 3 33 33 H 1.08999 * 109.47338 * 294.80906 * 14 13 3 34 34 H 1.08997 * 109.47156 * 90.00087 * 17 16 15 35 35 H 1.08999 * 109.47079 * 210.00346 * 17 16 15 36 36 H 1.09010 * 109.46624 * 329.99755 * 17 16 15 37 37 H 1.07999 * 120.09421 * 0.04963 * 20 19 18 38 38 H 1.08000 * 119.65494 * 180.27869 * 21 20 19 39 39 H 1.07995 * 119.79425 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.14294 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4437 -0.1053 6 1 4.1390 1.8917 0.6765 7 6 4.1584 0.8729 -1.1993 8 7 3.4331 0.3277 -2.1512 9 14 6.0219 0.8739 -1.3293 10 1 6.5992 0.1442 -0.1720 11 1 6.4304 0.2049 -2.5906 12 1 6.5174 2.2738 -1.3290 13 7 1.6359 2.1047 1.2474 14 6 1.5397 3.5591 1.0640 15 6 1.0019 4.1896 2.3226 16 6 -0.2844 4.4130 2.6246 17 6 -1.4519 4.0654 1.7372 18 8 -0.3825 4.9922 3.8340 19 6 0.8365 5.1742 4.3801 20 6 1.2747 5.7166 5.5819 21 6 2.6239 5.7643 5.8608 22 6 3.5524 5.2761 4.9527 23 6 3.1420 4.7394 3.7640 24 6 1.7817 4.6826 3.4643 25 1 -0.3633 -1.0236 -0.0914 26 1 -0.3633 0.4325 0.9322 27 1 -0.3632 0.5910 -0.8407 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8658 -0.0742 -2.9207 31 1 2.2685 1.8762 1.9995 32 1 0.8686 3.7768 0.2331 33 1 2.5283 3.9643 0.8484 34 1 -1.7912 3.0545 1.9627 35 1 -2.2649 4.7695 1.9141 36 1 -1.1437 4.1210 0.6931 37 1 0.5604 6.0994 6.2957 38 1 2.9614 6.1823 6.7977 39 1 4.6058 5.3203 5.1863 40 1 3.8686 4.3611 3.0602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121282615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = 13.822770 kcal Electronic energy + Delta-G solvation = -20839.487313 eV Core-core repulsion = 17812.924424 eV Total energy + Delta-G solvation = -3026.562890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24812 -37.75113 -36.39090 -33.92238 -31.94490 -31.05913 -30.80339 -30.17128 -27.37551 -26.22489 -24.21594 -22.79190 -22.41169 -21.44649 -19.72517 -19.37692 -17.03210 -16.59519 -16.46997 -16.07392 -15.25508 -14.81915 -14.24906 -13.85727 -13.63101 -13.58504 -13.19154 -12.99309 -12.90303 -12.60295 -12.23382 -12.05212 -11.87299 -11.59076 -11.42897 -11.19307 -11.07091 -10.95310 -10.71534 -10.56202 -10.16785 -9.79189 -9.60846 -9.44507 -9.08340 -8.47227 -8.39447 -7.80791 -7.25067 -6.01179 -4.14181 1.07332 1.49465 2.57357 2.89881 3.26761 3.32172 3.34506 3.85676 4.38054 4.61670 4.79921 5.01736 5.16989 5.23966 5.32254 5.35613 5.43393 5.58706 5.66790 5.69289 5.84516 5.97057 6.02504 6.23586 6.35475 6.39434 6.45998 6.49610 6.50510 6.59897 6.70460 6.74324 6.86539 7.11553 7.16459 7.40514 7.43964 7.57549 7.76108 8.07698 8.13529 8.31605 8.63597 8.98204 9.53528 10.98876 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.005452 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.358374 B = 5134.377732 C = 6397.244414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.136 3.864 15 C -0.156 4.156 16 C 0.035 3.965 17 C -0.071 4.071 18 O -0.198 6.198 19 C 0.047 3.953 20 C -0.111 4.111 21 C -0.102 4.102 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.115 4.115 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.329 0.671 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 9.018 10.885 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.312 5.312 14 C 0.006 3.994 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.127 4.127 18 O -0.101 6.101 19 C 0.000 4.000 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.159 4.159 23 C -0.084 4.084 24 C -0.116 4.116 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.309 8.881 10.690 15.263 hybrid contribution 2.245 0.159 -0.167 2.257 sum -4.064 9.040 10.523 14.456 Atomic orbital electron populations 1.21685 0.99015 0.98279 1.00308 1.21491 0.92082 0.99173 1.01667 1.19163 0.92708 0.91180 0.86170 0.94992 1.21827 0.92719 1.38180 1.05825 0.92976 1.24913 0.97896 0.94947 0.95631 1.69861 1.34966 1.37922 1.09530 0.86734 0.86142 0.78178 0.77389 1.20288 1.21207 1.20417 1.60932 1.55465 1.04969 1.09795 1.20075 0.98727 0.89862 0.90729 1.21103 0.91503 1.05196 0.97961 1.22102 0.96583 0.98119 0.84450 1.20370 0.92894 1.02464 0.97020 1.83906 1.29507 1.66904 1.29759 1.19567 0.82593 1.01971 0.95898 1.19842 0.95957 1.03303 0.93886 1.20834 0.91548 1.00043 0.99575 1.20729 0.99743 1.01041 0.94387 1.20394 0.93690 0.97439 0.96894 1.19922 0.94299 1.02428 0.95000 0.95715 0.93489 0.94447 0.89172 0.95129 0.92814 0.85513 0.91059 0.94455 0.89431 0.91121 0.88903 0.85554 0.85246 0.85675 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.73 37.16 0.36 -2.36 16 2 C -0.11 -2.49 5.45 -26.73 -0.15 -2.64 16 3 C 0.22 5.19 1.98 -68.87 -0.14 5.06 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -14.46 8.47 -34.44 -0.29 -14.75 16 6 H 0.05 1.37 7.73 -52.48 -0.41 0.97 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.60 11.30 55.43 0.63 -23.98 16 9 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.16 5.72 -109.23 -0.62 -14.79 16 14 C 0.14 2.56 5.81 -4.98 -0.03 2.53 16 15 C -0.16 -2.70 5.91 -102.66 -0.61 -3.30 16 16 C 0.04 0.56 7.23 -35.80 -0.26 0.30 16 17 C -0.07 -0.88 10.18 36.01 0.37 -0.51 16 18 O -0.20 -3.20 10.58 3.89 0.04 -3.16 16 19 C 0.05 0.74 7.42 -38.47 -0.29 0.46 16 20 C -0.11 -1.43 10.07 -39.46 -0.40 -1.83 16 21 C -0.10 -1.16 10.01 -39.54 -0.40 -1.56 16 22 C -0.14 -1.76 9.98 -39.94 -0.40 -2.16 16 23 C -0.07 -1.00 10.05 -39.69 -0.40 -1.40 16 24 C -0.12 -1.94 6.38 -105.16 -0.67 -2.61 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.90 7.88 -51.93 -0.41 0.49 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.37 5.97 -51.93 -0.31 2.06 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 7.03 8.45 -39.29 -0.33 6.70 16 32 H 0.07 1.31 6.86 -51.93 -0.36 0.95 16 33 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.12 7.06 -51.92 -0.37 0.75 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -28.52 333.44 -9.28 -37.80 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.94 Total: 6.23 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.38 Total: -23.02 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.00 Total: -38.76 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.52 -9.28 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121282615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.620 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds