Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47668 * 304.24265 * 3 2 1 5 5 C 1.50708 * 109.46918 * 184.24809 * 3 2 1 6 6 H 1.08007 * 119.99503 * 240.00257 * 5 3 2 7 7 C 1.37874 * 120.00270 * 59.99323 * 5 3 2 8 8 N 1.31510 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99986 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47208 * 60.00623 * 9 7 5 11 11 H 1.48500 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47212 * 300.00163 * 9 7 5 13 13 N 1.46893 * 109.47351 * 64.24799 * 3 2 1 14 14 C 1.46902 * 111.00087 * 205.85057 * 13 3 2 15 15 C 1.50695 * 109.47515 * 174.80448 * 14 13 3 16 16 C 1.34003 * 126.91048 * 270.03229 * 15 14 13 17 17 C 1.50699 * 124.92209 * 359.97438 * 16 15 14 18 18 O 1.34452 * 110.15353 * 179.97438 * 16 15 14 19 19 C 1.34813 * 110.89138 * 359.97438 * 18 16 15 20 20 C 1.38939 * 133.49472 * 179.97438 * 19 18 16 21 21 C 1.37849 * 119.81527 * 180.02562 * 20 19 18 22 22 C 1.38745 * 120.68733 * 0.02562 * 21 20 19 23 23 C 1.36736 * 120.41621 * 0.02562 * 22 21 20 24 24 C 1.39413 * 119.71720 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47183 * 174.89526 * 1 2 3 26 26 H 1.08996 * 109.47159 * 294.89173 * 1 2 3 27 27 H 1.08995 * 109.46653 * 54.89364 * 1 2 3 28 28 H 1.08995 * 109.47125 * 239.99336 * 2 1 3 29 29 H 1.09005 * 109.46646 * 120.00107 * 2 1 3 30 30 H 0.97004 * 119.99999 * 180.02562 * 8 7 5 31 31 H 1.00899 * 111.00466 * 81.89974 * 13 3 2 32 32 H 1.09003 * 109.46724 * 54.80776 * 14 13 3 33 33 H 1.08999 * 109.47338 * 294.80906 * 14 13 3 34 34 H 1.08997 * 109.47156 * 90.00087 * 17 16 15 35 35 H 1.08999 * 109.47079 * 210.00346 * 17 16 15 36 36 H 1.09010 * 109.46624 * 329.99755 * 17 16 15 37 37 H 1.07999 * 120.09421 * 0.04963 * 20 19 18 38 38 H 1.08000 * 119.65494 * 180.27869 * 21 20 19 39 39 H 1.07995 * 119.79425 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.14294 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6160 1.9778 -0.8495 5 6 3.5434 1.4437 -0.1053 6 1 4.1390 1.8917 0.6765 7 6 4.1584 0.8729 -1.1993 8 7 3.4331 0.3277 -2.1512 9 14 6.0219 0.8739 -1.3293 10 1 6.5992 0.1442 -0.1720 11 1 6.4304 0.2049 -2.5906 12 1 6.5174 2.2738 -1.3290 13 7 1.6359 2.1047 1.2474 14 6 1.5397 3.5591 1.0640 15 6 1.0019 4.1896 2.3226 16 6 -0.2844 4.4130 2.6246 17 6 -1.4519 4.0654 1.7372 18 8 -0.3825 4.9922 3.8340 19 6 0.8365 5.1742 4.3801 20 6 1.2747 5.7166 5.5819 21 6 2.6239 5.7643 5.8608 22 6 3.5524 5.2761 4.9527 23 6 3.1420 4.7394 3.7640 24 6 1.7817 4.6826 3.4643 25 1 -0.3633 -1.0236 -0.0914 26 1 -0.3633 0.4325 0.9322 27 1 -0.3632 0.5910 -0.8407 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8658 -0.0742 -2.9207 31 1 2.2685 1.8762 1.9995 32 1 0.8686 3.7768 0.2331 33 1 2.5283 3.9643 0.8484 34 1 -1.7912 3.0545 1.9627 35 1 -2.2649 4.7695 1.9141 36 1 -1.1437 4.1210 0.6931 37 1 0.5604 6.0994 6.2957 38 1 2.9614 6.1823 6.7977 39 1 4.6058 5.3203 5.1863 40 1 3.8686 4.3611 3.0602 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121282615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = -1.348484 kcal Electronic energy + Delta-G solvation = -20840.145188 eV Core-core repulsion = 17812.924424 eV Total energy + Delta-G solvation = -3027.220765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.41492 -38.79935 -38.16164 -35.45228 -33.79961 -32.46693 -32.02402 -31.31594 -28.92031 -27.70367 -25.86640 -24.22260 -23.85284 -22.51877 -21.44868 -20.80196 -18.78298 -17.92596 -17.71652 -17.29447 -16.77211 -16.25844 -15.84858 -15.52558 -14.96217 -14.78112 -14.60609 -14.43345 -14.19217 -13.87894 -13.48923 -13.36813 -13.13441 -13.12713 -13.01652 -12.90632 -12.65282 -12.55420 -12.42338 -12.10562 -11.74441 -11.51092 -11.44469 -11.03546 -10.79784 -10.46543 -9.56261 -9.12590 -8.91424 -8.06218 -6.27855 -0.00752 0.41445 1.35615 1.37943 1.38632 1.45933 1.77740 2.39320 2.78173 3.13841 3.50346 3.62515 3.90812 3.96506 4.14209 4.26559 4.36925 4.45747 4.49879 4.60137 4.67592 4.75340 4.78367 4.79796 4.84863 4.95146 5.00083 5.08875 5.18964 5.33647 5.40114 5.44556 5.51371 5.53451 5.55698 5.63695 5.77027 5.79758 6.10120 6.19183 6.25406 6.37541 6.75438 6.98047 7.43236 8.90295 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017580 B = 0.005452 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.358374 B = 5134.377732 C = 6397.244414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.005 0.995 5 C -0.562 4.562 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.276 1.276 13 N -0.669 5.669 14 C 0.148 3.852 15 C -0.188 4.188 16 C 0.043 3.957 17 C -0.071 4.071 18 O -0.202 6.202 19 C 0.024 3.976 20 C -0.110 4.110 21 C -0.092 4.092 22 C -0.132 4.132 23 C -0.095 4.095 24 C -0.142 4.142 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.325 0.675 32 H 0.072 0.928 33 H 0.014 0.986 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 9.945 12.962 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.601 4.601 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.298 5.298 14 C 0.018 3.982 15 C -0.190 4.190 16 C -0.005 4.005 17 C -0.127 4.127 18 O -0.105 6.105 19 C -0.023 4.023 20 C -0.128 4.128 21 C -0.109 4.109 22 C -0.150 4.150 23 C -0.114 4.114 24 C -0.143 4.143 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.173 0.827 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.465 9.817 12.779 17.363 hybrid contribution 2.313 -0.065 -0.733 2.427 sum -4.152 9.752 12.046 16.045 Atomic orbital electron populations 1.21539 0.96140 0.99581 1.00763 1.21351 0.94638 0.98174 0.99870 1.18953 0.91467 0.91571 0.86552 0.97703 1.22122 0.94124 1.38056 1.05795 0.93617 1.25603 1.01931 0.94721 0.95408 1.69982 1.36429 1.38414 1.09861 0.85795 0.81316 0.78151 0.77463 1.19866 1.20698 1.20161 1.60886 1.54578 1.06199 1.08089 1.19885 0.97633 0.88513 0.92134 1.20944 0.92711 1.07365 0.97942 1.22590 0.96963 0.96512 0.84450 1.20508 0.92529 1.03434 0.96236 1.83900 1.29870 1.66973 1.29740 1.20038 0.82105 1.03193 0.96977 1.20346 0.97283 1.02109 0.93095 1.21352 0.90643 0.98358 1.00557 1.21120 1.01578 0.99142 0.93172 1.20496 0.93055 0.99480 0.98330 1.20132 0.95287 1.03547 0.95361 0.93855 0.92465 0.94580 0.91972 0.95770 0.92820 0.85966 0.90951 0.96762 0.88851 0.88494 0.88909 0.82673 0.80963 0.82991 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.73 71.98 0.70 -4.17 16 2 C -0.10 -4.88 5.45 30.59 0.17 -4.72 16 3 C 0.22 11.11 1.98 44.17 0.09 11.20 16 4 H 0.01 0.28 7.70 -2.39 -0.02 0.26 16 5 C -0.56 -30.61 8.47 25.60 0.22 -30.39 16 6 H 0.05 2.49 7.73 -2.91 -0.02 2.47 16 7 C 0.02 1.30 5.29 84.65 0.45 1.75 16 8 N -0.91 -51.57 11.30 21.45 0.24 -51.33 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.67 -28.65 5.72 -499.48 -2.86 -31.51 16 14 C 0.15 5.83 5.81 85.56 0.50 6.33 16 15 C -0.19 -6.67 5.91 -18.59 -0.11 -6.78 16 16 C 0.04 1.34 7.23 24.72 0.18 1.52 16 17 C -0.07 -1.68 10.18 71.24 0.73 -0.95 16 18 O -0.20 -6.36 10.58 -9.00 -0.10 -6.45 16 19 C 0.02 0.72 7.42 22.99 0.17 0.89 16 20 C -0.11 -2.52 10.07 22.35 0.23 -2.29 16 21 C -0.09 -1.76 10.01 22.30 0.22 -1.54 16 22 C -0.13 -3.03 9.98 22.04 0.22 -2.81 16 23 C -0.10 -2.93 10.05 22.20 0.22 -2.71 16 24 C -0.14 -4.84 6.38 -20.21 -0.13 -4.97 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 3.35 5.97 -2.39 -0.01 3.34 16 29 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 31 H 0.32 14.40 8.45 -89.69 -0.76 13.64 16 32 H 0.07 2.78 6.86 -2.39 -0.02 2.76 16 33 H 0.01 0.62 8.11 -2.39 -0.02 0.60 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.09 2.19 7.06 -2.38 -0.02 2.17 16 37 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.11 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -62.88 333.44 3.43 -59.45 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.28 Total: 23.99 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.84 Total: -39.64 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -2.62 Total: -82.83 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.10 Total: -6.45 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.88 3.43 -59.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121282615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.102 kcal (2) G-P(sol) polarization free energy of solvation -62.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds