Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46760 * 2 1 4 4 N 1.46503 * 109.46939 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99864 * 276.07416 * 4 3 2 6 6 H 1.08003 * 120.00071 * 34.78108 * 5 4 3 7 7 C 1.38812 * 119.99928 * 214.77724 * 5 4 3 8 8 N 1.31614 * 120.00196 * 22.06757 * 7 5 4 9 9 Si 1.86800 * 119.99807 * 202.06548 * 7 5 4 10 10 H 1.48504 * 109.47162 * 60.00422 * 9 7 5 11 11 H 1.48504 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47569 * 300.00109 * 9 7 5 13 13 C 1.46497 * 120.00263 * 96.07399 * 4 3 2 14 14 C 1.50704 * 109.46883 * 270.00082 * 13 4 3 15 15 C 1.33997 * 126.90641 * 90.02313 * 14 13 4 16 16 C 1.50705 * 124.92238 * 359.95704 * 15 14 13 17 17 O 1.34449 * 110.15511 * 179.97438 * 15 14 13 18 18 C 1.34806 * 110.89020 * 0.02562 * 17 15 14 19 19 C 1.38942 * 133.49582 * 179.97438 * 18 17 15 20 20 C 1.37846 * 119.81718 * 179.97438 * 19 18 17 21 21 C 1.38742 * 120.68775 * 359.97438 * 20 19 18 22 22 C 1.36744 * 120.41569 * 0.02974 * 21 20 19 23 23 C 1.39407 * 119.71690 * 359.67067 * 22 21 20 24 24 H 1.08996 * 109.46846 * 299.99585 * 1 2 3 25 25 H 1.08998 * 109.47336 * 59.99887 * 1 2 3 26 26 H 1.08995 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46846 * 240.00415 * 2 1 3 28 28 H 1.08999 * 109.46841 * 120.00288 * 2 1 3 29 29 H 1.08996 * 109.47102 * 60.00571 * 3 2 1 30 30 H 1.08998 * 109.47288 * 300.00142 * 3 2 1 31 31 H 0.96999 * 120.00534 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47011 * 29.99376 * 13 4 3 33 33 H 1.08995 * 109.47494 * 150.00068 * 13 4 3 34 34 H 1.09005 * 109.46932 * 90.00129 * 16 15 14 35 35 H 1.09001 * 109.46961 * 209.99935 * 16 15 14 36 36 H 1.08993 * 109.47021 * 329.99895 * 16 15 14 37 37 H 1.07996 * 120.09012 * 359.96937 * 19 18 17 38 38 H 1.08000 * 119.65604 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.79495 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.13950 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3169 1.1784 6 1 3.7953 0.6961 1.9690 7 6 5.3924 1.9874 1.3573 8 7 5.6688 3.0486 0.6294 9 14 6.6180 1.3836 2.6312 10 1 7.0274 -0.0060 2.3046 11 1 7.8128 2.2654 2.6255 12 1 5.9884 1.4110 3.9759 13 6 4.2370 1.5770 -1.2624 14 6 4.4880 0.2102 -1.8457 15 6 3.6941 -0.4626 -2.6898 16 6 2.3753 0.0393 -3.2191 17 8 4.2443 -1.6506 -2.9958 18 6 5.4248 -1.8103 -2.3648 19 6 6.3667 -2.8315 -2.3424 20 6 7.5061 -2.6964 -1.5785 21 6 7.7246 -1.5491 -0.8296 22 6 6.8101 -0.5325 -0.8377 23 6 5.6547 -0.6484 -1.6092 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9563 -0.8899 31 1 6.5087 3.5173 0.7547 32 1 3.6476 2.1683 -1.9632 33 1 5.1895 2.0741 -1.0788 34 1 2.5414 0.5904 -4.1448 35 1 1.7160 -0.8067 -3.4132 36 1 1.9148 0.6973 -2.4821 37 1 6.2066 -3.7286 -2.9220 38 1 8.2363 -3.4920 -1.5627 39 1 8.6225 -1.4582 -0.2364 40 1 6.9849 0.3589 -0.2534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130813507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = 38.152352 kcal Electronic energy + Delta-G solvation = -21903.128682 eV Core-core repulsion = 18877.620802 eV Total energy + Delta-G solvation = -3025.507880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80358 -37.34071 -36.45985 -33.19469 -32.70804 -30.69688 -30.53085 -29.81216 -27.16951 -25.55455 -25.26775 -22.38002 -22.14658 -21.06626 -20.25067 -19.16827 -17.00301 -16.30936 -16.05834 -15.60203 -14.91370 -14.82281 -14.46420 -13.93051 -13.50325 -13.19214 -13.15886 -12.88309 -12.77037 -12.58236 -12.16636 -11.91818 -11.65348 -11.52279 -11.33741 -11.16532 -10.96688 -10.74542 -10.58263 -10.51048 -10.26973 -10.05839 -9.83248 -9.80917 -9.12563 -8.49749 -8.05797 -7.34544 -6.64040 -5.82316 -3.35651 1.49212 1.90677 3.01678 3.30308 3.34094 3.39889 3.44518 4.28936 4.46926 5.04819 5.20430 5.30956 5.37143 5.51555 5.58946 5.64711 5.67119 5.75166 5.76005 5.80948 5.84406 6.05866 6.07481 6.15347 6.25022 6.35913 6.38108 6.45683 6.58575 6.61270 6.69435 6.87582 6.91030 6.95438 7.06174 7.15902 7.24308 7.26595 7.64105 7.80020 7.85982 8.48229 9.15266 9.78773 10.34723 11.18182 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.011188 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.348667 B = 2502.149020 C = 4233.325515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 C 0.148 3.852 4 N -0.574 5.574 5 C -0.248 4.248 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.880 3.120 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.281 1.281 13 C 0.198 3.802 14 C -0.140 4.140 15 C -0.011 4.011 16 C -0.072 4.072 17 O -0.204 6.204 18 C 0.043 3.957 19 C -0.121 4.121 20 C -0.102 4.102 21 C -0.154 4.154 22 C -0.046 4.046 23 C -0.103 4.103 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.256 0.744 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -6.896 -6.366 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.022 3.978 4 N -0.293 5.293 5 C -0.377 4.377 6 H 0.076 0.924 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.072 3.928 14 C -0.144 4.144 15 C -0.059 4.059 16 C -0.129 4.129 17 O -0.107 6.107 18 C -0.004 4.004 19 C -0.140 4.140 20 C -0.120 4.120 21 C -0.172 4.172 22 C -0.064 4.064 23 C -0.104 4.104 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.297 -6.909 -6.504 9.763 hybrid contribution 0.792 -0.507 0.854 1.270 sum -1.504 -7.416 -5.650 9.444 Atomic orbital electron populations 1.21731 0.97396 1.00349 1.00989 1.22267 0.93662 1.01179 1.02041 1.20940 0.85135 0.92933 0.98790 1.43742 0.99251 1.84110 1.02196 1.18944 1.03575 1.21888 0.93335 0.92400 1.24987 1.00502 0.94966 0.98135 1.69938 1.24207 1.16432 1.42375 0.86730 0.81378 0.78939 0.82023 1.20250 1.21394 1.20718 1.19539 1.00799 0.87106 0.85359 1.22479 0.92259 1.01527 0.98125 1.21937 0.97556 0.84424 1.01938 1.20415 0.89930 1.00902 1.01606 1.83824 1.30321 1.36056 1.60519 1.19611 0.86951 0.97104 0.96748 1.19716 0.93246 0.97268 1.03746 1.20738 0.96351 0.97943 0.97000 1.20691 1.00230 0.94492 1.01791 1.20514 0.91504 0.99036 0.95383 1.19896 0.96520 0.94450 0.99562 0.93250 0.93425 0.93894 0.92240 0.92634 0.93673 0.94664 0.93409 0.94520 0.87202 0.90854 0.91337 0.88725 0.86066 0.85699 0.86246 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.15 -2.75 5.79 -26.73 -0.15 -2.91 16 3 C 0.15 3.01 5.14 -4.04 -0.02 2.99 16 4 N -0.57 -13.78 2.44 -174.61 -0.43 -14.20 16 5 C -0.25 -6.58 9.48 -15.06 -0.14 -6.73 16 6 H 0.06 1.58 7.92 -52.48 -0.42 1.16 16 7 C 0.01 0.36 4.54 -17.43 -0.08 0.28 16 8 N -0.89 -24.39 11.31 55.49 0.63 -23.76 16 9 Si 0.88 21.02 28.64 -169.99 -4.87 16.15 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.20 4.58 5.42 -5.19 -0.03 4.55 16 14 C -0.14 -3.02 5.89 -102.66 -0.60 -3.62 16 15 C -0.01 -0.21 6.25 -35.80 -0.22 -0.44 16 16 C -0.07 -1.07 8.93 36.01 0.32 -0.75 16 17 O -0.20 -4.02 10.58 3.92 0.04 -3.98 16 18 C 0.04 0.86 7.42 -38.47 -0.29 0.58 16 19 C -0.12 -2.02 10.07 -39.46 -0.40 -2.42 16 20 C -0.10 -1.59 10.01 -39.54 -0.40 -1.99 16 21 C -0.15 -2.72 9.98 -39.94 -0.40 -3.12 16 22 C -0.05 -0.98 10.05 -39.69 -0.40 -1.38 16 23 C -0.10 -2.25 6.38 -105.16 -0.67 -2.92 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.10 5.06 -51.93 -0.26 0.84 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.04 0.65 6.85 -51.93 -0.36 0.30 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.04 0.79 7.43 -51.93 -0.39 0.40 16 33 H 0.11 2.87 5.33 -51.93 -0.28 2.60 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.43 4.81 -51.93 -0.25 1.18 16 37 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.13 2.98 6.60 -52.48 -0.35 2.63 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -28.82 322.98 -8.52 -37.35 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.65 Total: 3.19 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.11 Total: -19.62 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.20 Total: -37.96 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.87 Total: 16.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.82 -8.52 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130813507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.498 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds