Wall clock time and date at job start Mon Mar 30 2020 01:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47513 * 2 1 4 4 C 1.50695 * 109.47416 * 120.00599 * 2 1 3 5 5 C 1.38169 * 120.02585 * 300.31605 * 4 2 1 6 6 C 1.38244 * 120.05370 * 180.29640 * 5 4 2 7 7 C 1.38284 * 120.11444 * 359.68154 * 6 5 4 8 8 C 1.38127 * 120.05278 * 359.97438 * 7 6 5 9 9 C 1.38715 * 120.03029 * 119.99723 * 4 2 1 10 10 O 1.35892 * 120.05334 * 359.97438 * 9 4 2 11 11 C 1.42911 * 116.99674 * 179.72837 * 10 9 4 12 12 C 1.53002 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47407 * 304.99603 * 12 11 10 14 14 C 1.47206 * 109.47021 * 65.00015 * 12 11 10 15 15 N 5.33190 * 140.36049 * 235.06484 * 2 1 3 16 16 C 1.52997 * 109.46817 * 184.99822 * 12 11 10 17 17 C 1.50698 * 109.46933 * 175.00167 * 16 12 11 18 18 H 1.08003 * 120.00121 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99840 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99940 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47570 * 89.99954 * 21 19 17 23 23 H 1.48509 * 109.46793 * 209.99830 * 21 19 17 24 24 H 1.48499 * 109.47276 * 329.99570 * 21 19 17 25 25 H 1.09002 * 109.46653 * 300.00020 * 1 2 3 26 26 H 1.09000 * 109.47020 * 59.99418 * 1 2 3 27 27 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46913 * 240.00450 * 2 1 3 29 29 H 1.08996 * 109.47606 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47453 * 300.00317 * 3 2 1 31 31 H 1.09002 * 109.47178 * 60.00301 * 3 2 1 32 32 H 1.07991 * 119.97380 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.94312 * 179.70209 * 6 5 4 34 34 H 1.08000 * 119.97769 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.02625 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47202 * 60.00210 * 11 10 9 37 37 H 1.08997 * 109.46780 * 299.99774 * 11 10 9 38 38 H 1.08998 * 109.47192 * 294.99969 * 16 12 11 39 39 H 1.09000 * 109.47325 * 55.00085 * 16 12 11 40 40 H 0.97004 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.6935 -0.2429 2.4856 6 6 2.1591 -0.8906 3.6146 7 6 2.9594 -2.0116 3.4910 8 6 3.2950 -2.4872 2.2384 9 6 2.8298 -1.8384 1.1036 10 8 3.1587 -2.3043 -0.1298 11 6 3.9881 -3.4668 -0.1843 12 6 4.2487 -3.8393 -1.6452 13 1 3.2981 -3.9590 -2.1649 14 6 5.0304 -2.7725 -2.2916 15 7 5.6359 -1.9479 -2.7886 16 6 5.0313 -5.1526 -1.7048 17 6 5.1817 -5.5830 -3.1412 18 1 4.7615 -4.9799 -3.9325 19 6 5.8567 -6.7462 -3.4453 20 7 5.9875 -7.1221 -4.6987 21 14 6.5841 -7.7889 -2.0767 22 1 5.5787 -8.7839 -1.6246 23 1 7.7888 -8.4963 -2.5805 24 1 6.9633 -6.9155 -0.9372 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.0681 0.6319 2.5847 33 1 1.8972 -0.5207 4.5949 34 1 3.3215 -2.5162 4.3746 35 1 3.9197 -3.3630 2.1424 36 1 3.4869 -4.2946 0.3174 37 1 4.9358 -3.2606 0.3131 38 1 6.0175 -5.0082 -1.2637 39 1 4.4940 -5.9214 -1.1495 40 1 6.4620 -7.9406 -4.9127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153095064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:11 Heat of formation + Delta-G solvation = -11.468850 kcal Electronic energy + Delta-G solvation = -20315.867125 eV Core-core repulsion = 17288.207508 eV Total energy + Delta-G solvation = -3027.659617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.39416 -38.00243 -36.19457 -35.39879 -33.86937 -32.11578 -30.17364 -29.65594 -27.65342 -27.18296 -24.49187 -23.17944 -21.95961 -21.55293 -20.04304 -18.04403 -17.27348 -17.03202 -16.18005 -15.64010 -15.27862 -14.66191 -14.39295 -14.20620 -13.92675 -13.63757 -13.42838 -13.34662 -12.84647 -12.48555 -12.46805 -12.28145 -12.12514 -12.06954 -11.76253 -11.56037 -11.36442 -11.19505 -11.02164 -10.78049 -10.66587 -10.54133 -10.46578 -10.16669 -9.89674 -9.42796 -8.89508 -8.68364 -8.12513 -6.16972 -4.18903 1.26346 1.41679 3.18454 3.21006 3.29601 3.30633 3.54441 3.58698 3.70614 4.31991 4.55606 4.57521 4.71679 4.91297 5.05630 5.08873 5.16919 5.17651 5.20602 5.31255 5.33369 5.46291 5.54479 5.55463 5.62765 5.75832 5.76560 5.94659 5.99246 6.03655 6.11798 6.16086 6.20557 6.34388 6.45107 6.53604 6.75680 6.77621 6.98234 7.42785 7.55189 8.30774 8.36306 8.85931 9.41613 10.95890 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.004228 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.940590 B = 6621.053309 C = 7366.976853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.163 4.163 7 C -0.085 4.085 8 C -0.208 4.208 9 C 0.139 3.861 10 O -0.310 6.310 11 C 0.063 3.937 12 C 0.023 3.977 13 H 0.119 0.881 14 C 0.241 3.759 15 N -0.459 5.459 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.076 0.924 19 C 0.073 3.927 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 10.952 17.148 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.181 4.181 7 C -0.103 4.103 8 C -0.227 4.227 9 C 0.093 3.907 10 O -0.224 6.224 11 C -0.013 4.013 12 C 0.001 3.999 13 H 0.136 0.864 14 C -0.077 4.077 15 N -0.135 5.135 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.094 0.906 19 C -0.129 4.129 20 N -0.531 5.531 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.413 12.126 16.060 22.216 hybrid contribution 0.410 -1.258 0.933 1.619 sum -9.003 10.867 16.993 22.089 Atomic orbital electron populations 1.21837 0.94522 1.01953 1.01484 1.19978 0.95580 0.95690 0.96024 1.21836 1.01323 0.95238 1.01466 1.19235 1.00642 0.95510 0.95582 1.20779 0.98753 0.99198 0.91114 1.20977 1.01182 0.97561 0.98365 1.20908 0.96881 0.95912 0.96646 1.21321 1.05727 1.03113 0.92499 1.18860 0.94395 0.93216 0.84207 1.86105 1.65900 1.44772 1.25578 1.23072 0.94090 0.86373 0.97753 1.19003 0.99036 0.91053 0.90812 0.86368 1.28809 0.93106 0.92720 0.93042 1.81084 1.10395 1.12701 1.09357 1.19629 0.95316 0.89301 0.99816 1.20950 1.36969 1.08525 0.90410 0.90576 1.24968 0.95293 0.97272 0.95402 1.69896 1.41859 1.23910 1.17464 0.86832 0.79269 0.80851 0.82705 1.19899 1.21170 1.18878 0.92849 0.92484 0.92500 0.89367 0.92638 0.92473 0.92828 0.85804 0.86282 0.86053 0.85181 0.89995 0.91449 0.95389 0.94485 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.00 37.15 0.33 -1.02 16 2 C -0.05 -0.63 3.06 -91.78 -0.28 -0.91 16 3 C -0.14 -1.46 9.01 37.15 0.33 -1.13 16 4 C -0.11 -1.33 4.79 -104.47 -0.50 -1.84 16 5 C -0.08 -0.84 8.71 -39.60 -0.34 -1.18 16 6 C -0.16 -1.60 10.04 -39.56 -0.40 -2.00 16 7 C -0.09 -0.88 10.04 -39.60 -0.40 -1.28 16 8 C -0.21 -2.48 9.04 -39.43 -0.36 -2.83 16 9 C 0.14 1.88 6.66 -39.22 -0.26 1.61 16 10 O -0.31 -4.59 8.64 -19.40 -0.17 -4.76 16 11 C 0.06 0.89 4.09 37.16 0.15 1.04 16 12 C 0.02 0.40 2.45 -93.40 -0.23 0.17 16 13 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 14 C 0.24 4.95 13.71 -20.71 -0.28 4.67 16 15 N -0.46 -10.35 18.55 42.21 0.78 -9.57 16 16 C 0.00 -0.04 3.49 -27.89 -0.10 -0.14 16 17 C -0.53 -14.00 9.15 -34.44 -0.32 -14.31 16 18 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 21 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 25 H 0.05 0.45 7.37 -51.93 -0.38 0.06 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.19 6.99 -51.93 -0.36 0.83 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.47 7.41 -51.93 -0.38 0.09 16 32 H 0.12 1.04 7.10 -52.49 -0.37 0.66 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.39 6.30 -52.48 -0.33 1.06 16 36 H 0.08 0.97 7.66 -51.93 -0.40 0.57 16 37 H 0.07 0.91 7.66 -51.93 -0.40 0.51 16 38 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 39 H 0.04 0.70 7.57 -51.93 -0.39 0.30 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -30.89 336.33 -6.89 -37.78 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.93 Total: -0.96 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.74 Total: -17.23 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 1.56 Total: -35.34 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.17 Total: -4.76 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.89 -6.89 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153095064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.312 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds