Wall clock time and date at job start Mon Mar 30 2020 01:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47513 * 2 1 4 4 C 1.50695 * 109.47416 * 120.00599 * 2 1 3 5 5 C 1.38169 * 120.02585 * 300.31605 * 4 2 1 6 6 C 1.38244 * 120.05370 * 180.29640 * 5 4 2 7 7 C 1.38284 * 120.11444 * 359.68154 * 6 5 4 8 8 C 1.38127 * 120.05278 * 359.97438 * 7 6 5 9 9 C 1.38715 * 120.03029 * 119.99723 * 4 2 1 10 10 O 1.35892 * 120.05334 * 359.97438 * 9 4 2 11 11 C 1.42911 * 116.99674 * 179.72837 * 10 9 4 12 12 C 1.53002 * 109.46796 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47407 * 304.99603 * 12 11 10 14 14 C 1.47206 * 109.47021 * 65.00015 * 12 11 10 15 15 N 5.33190 * 140.36049 * 235.06484 * 2 1 3 16 16 C 1.52997 * 109.46817 * 184.99822 * 12 11 10 17 17 C 1.50698 * 109.46933 * 175.00167 * 16 12 11 18 18 H 1.08003 * 120.00121 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99840 * 179.97438 * 17 16 12 20 20 N 1.31513 * 119.99940 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99921 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47570 * 89.99954 * 21 19 17 23 23 H 1.48509 * 109.46793 * 209.99830 * 21 19 17 24 24 H 1.48499 * 109.47276 * 329.99570 * 21 19 17 25 25 H 1.09002 * 109.46653 * 300.00020 * 1 2 3 26 26 H 1.09000 * 109.47020 * 59.99418 * 1 2 3 27 27 H 1.09000 * 109.47588 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46913 * 240.00450 * 2 1 3 29 29 H 1.08996 * 109.47606 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47453 * 300.00317 * 3 2 1 31 31 H 1.09002 * 109.47178 * 60.00301 * 3 2 1 32 32 H 1.07991 * 119.97380 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.94312 * 179.70209 * 6 5 4 34 34 H 1.08000 * 119.97769 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.02625 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.47202 * 60.00210 * 11 10 9 37 37 H 1.08997 * 109.46780 * 299.99774 * 11 10 9 38 38 H 1.08998 * 109.47192 * 294.99969 * 16 12 11 39 39 H 1.09000 * 109.47325 * 55.00085 * 16 12 11 40 40 H 0.97004 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.6935 -0.2429 2.4856 6 6 2.1591 -0.8906 3.6146 7 6 2.9594 -2.0116 3.4910 8 6 3.2950 -2.4872 2.2384 9 6 2.8298 -1.8384 1.1036 10 8 3.1587 -2.3043 -0.1298 11 6 3.9881 -3.4668 -0.1843 12 6 4.2487 -3.8393 -1.6452 13 1 3.2981 -3.9590 -2.1649 14 6 5.0304 -2.7725 -2.2916 15 7 5.6359 -1.9479 -2.7886 16 6 5.0313 -5.1526 -1.7048 17 6 5.1817 -5.5830 -3.1412 18 1 4.7615 -4.9799 -3.9325 19 6 5.8567 -6.7462 -3.4453 20 7 5.9875 -7.1221 -4.6987 21 14 6.5841 -7.7889 -2.0767 22 1 5.5787 -8.7839 -1.6246 23 1 7.7888 -8.4963 -2.5805 24 1 6.9633 -6.9155 -0.9372 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.0681 0.6319 2.5847 33 1 1.8972 -0.5207 4.5949 34 1 3.3215 -2.5162 4.3746 35 1 3.9197 -3.3630 2.1424 36 1 3.4869 -4.2946 0.3174 37 1 4.9358 -3.2606 0.3131 38 1 6.0175 -5.0082 -1.2637 39 1 4.4940 -5.9214 -1.1495 40 1 6.4620 -7.9406 -4.9127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153095064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:10 Heat of formation + Delta-G solvation = -28.032819 kcal Electronic energy + Delta-G solvation = -20316.585393 eV Core-core repulsion = 17288.207508 eV Total energy + Delta-G solvation = -3028.377884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30845 -39.09397 -37.67533 -36.21230 -35.63223 -33.96619 -30.99886 -30.65454 -29.17076 -27.97336 -25.76297 -24.16217 -23.35010 -22.80151 -20.89973 -19.12875 -18.81910 -18.67924 -17.25584 -16.47603 -16.46566 -16.20077 -15.41222 -15.38524 -15.09593 -14.75014 -14.69544 -14.41132 -14.30604 -14.05286 -13.79772 -13.39863 -13.21330 -13.08481 -12.92481 -12.80978 -12.61789 -12.36086 -12.21801 -12.03406 -11.86765 -11.82982 -11.67564 -11.49324 -11.42564 -11.30116 -10.74408 -9.69519 -9.00411 -8.26028 -6.33068 0.46141 0.58240 1.43098 1.46133 1.55923 1.82002 1.91270 2.25740 2.40354 2.89504 3.04962 3.13601 3.75481 3.81113 3.98523 4.13906 4.22673 4.24813 4.34291 4.34789 4.44464 4.53619 4.56669 4.63232 4.68971 4.80745 4.85765 4.93549 4.98926 5.13436 5.15032 5.24249 5.33509 5.34976 5.40400 5.53746 5.58836 5.66166 5.69628 5.96402 6.22322 6.51626 6.68320 6.76546 7.31434 8.90873 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.004228 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.940590 B = 6621.053309 C = 7366.976853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.083 4.083 6 C -0.159 4.159 7 C -0.090 4.090 8 C -0.217 4.217 9 C 0.108 3.892 10 O -0.330 6.330 11 C 0.071 3.929 12 C 0.027 3.973 13 H 0.123 0.877 14 C 0.250 3.750 15 N -0.503 5.503 16 C 0.001 3.999 17 C -0.535 4.535 18 H 0.029 0.971 19 C 0.005 3.995 20 N -0.953 5.953 21 Si 0.949 3.051 22 H -0.255 1.255 23 H -0.296 1.296 24 H -0.234 1.234 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 10.906 21.262 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 C -0.195 4.195 4 C -0.125 4.125 5 C -0.101 4.101 6 C -0.177 4.177 7 C -0.108 4.108 8 C -0.235 4.235 9 C 0.063 3.937 10 O -0.245 6.245 11 C -0.004 4.004 12 C 0.005 3.995 13 H 0.141 0.859 14 C -0.066 4.066 15 N -0.180 5.180 16 C -0.038 4.038 17 C -0.573 4.573 18 H 0.047 0.953 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.771 3.229 22 H -0.180 1.180 23 H -0.222 1.222 24 H -0.157 1.157 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.242 12.106 20.201 25.681 hybrid contribution 0.589 -1.143 -0.383 1.342 sum -9.653 10.963 19.818 24.619 Atomic orbital electron populations 1.21796 0.93071 1.01767 1.02632 1.19954 0.96792 0.95885 0.94845 1.21809 1.00111 0.94870 1.02702 1.19460 1.00953 0.95577 0.96496 1.21056 0.98754 0.99799 0.90495 1.21371 1.00024 0.96949 0.99403 1.21269 0.96537 0.96089 0.96896 1.21540 1.05858 1.03492 0.92623 1.19149 0.96037 0.94444 0.84042 1.86051 1.66333 1.45113 1.26958 1.22948 0.95115 0.87596 0.94779 1.19055 0.98139 0.88864 0.93417 0.85886 1.29548 0.92446 0.92577 0.92074 1.81069 1.11834 1.14247 1.10866 1.19558 0.96614 0.91384 0.96198 1.21315 1.35749 1.07701 0.92550 0.95293 1.26035 0.95968 0.99067 0.98117 1.70085 1.43842 1.24907 1.20475 0.85687 0.78180 0.79254 0.79762 1.17957 1.22211 1.15710 0.91067 0.91938 0.93334 0.92418 0.94457 0.91944 0.90866 0.83727 0.83536 0.83584 0.84123 0.86943 0.90621 0.94737 0.91079 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.00 71.98 0.65 -1.81 16 2 C -0.06 -1.28 3.06 -11.55 -0.04 -1.31 16 3 C -0.14 -2.75 9.01 71.98 0.65 -2.10 16 4 C -0.12 -2.89 4.79 -19.77 -0.09 -2.98 16 5 C -0.08 -1.50 8.71 22.25 0.19 -1.31 16 6 C -0.16 -2.56 10.04 22.28 0.22 -2.34 16 7 C -0.09 -1.56 10.04 22.25 0.22 -1.33 16 8 C -0.22 -4.62 9.04 22.37 0.20 -4.42 16 9 C 0.11 2.79 6.66 22.51 0.15 2.94 16 10 O -0.33 -9.60 8.64 -92.34 -0.80 -10.40 16 11 C 0.07 1.87 4.09 71.98 0.29 2.16 16 12 C 0.03 0.92 2.45 -12.60 -0.03 0.89 16 13 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 14 C 0.25 10.47 13.71 89.43 1.23 11.69 16 15 N -0.50 -23.39 18.55 20.02 0.37 -23.02 16 16 C 0.00 0.04 3.49 29.85 0.10 0.14 16 17 C -0.54 -28.62 9.15 25.60 0.23 -28.38 16 18 H 0.03 1.76 7.84 -2.91 -0.02 1.74 16 19 C 0.01 0.28 5.47 84.66 0.46 0.75 16 20 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 21 Si 0.95 40.41 27.47 68.60 1.88 42.29 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.30 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16 25 H 0.07 1.02 7.37 -2.39 -0.02 1.00 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 1.64 6.99 -2.38 -0.02 1.62 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.15 7.41 -2.39 -0.02 1.13 16 32 H 0.15 1.91 7.10 -2.92 -0.02 1.89 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 36 H 0.11 2.25 7.66 -2.39 -0.02 2.24 16 37 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 38 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 39 H 0.07 2.39 7.57 -2.39 -0.02 2.37 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -70.35 336.33 7.17 -63.18 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.96 Total: 13.61 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 4.45 Total: -27.41 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: 0.67 Total: -81.27 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.80 Total: -10.40 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.29 kcal Total: -70.35 7.17 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153095064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.147 kcal (2) G-P(sol) polarization free energy of solvation -70.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds