Wall clock time and date at job start Mon Mar 30 2020 02:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 119.99557 * 2 1 4 4 C 1.32989 * 120.00063 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00109 * 352.83087 * 4 2 1 6 6 O 1.21612 * 120.00112 * 354.01548 * 5 4 2 7 7 N 1.34773 * 119.99812 * 174.01082 * 5 4 2 8 8 C 1.46506 * 119.99842 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46748 * 34.99618 * 8 7 5 10 10 C 1.52990 * 109.47156 * 154.99976 * 8 7 5 11 11 C 1.50703 * 109.47422 * 294.99653 * 10 8 7 12 12 H 1.08001 * 119.99408 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00392 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00201 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99581 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47118 * 90.00737 * 15 13 11 17 17 H 1.48506 * 109.46672 * 209.99902 * 15 13 11 18 18 H 1.48496 * 109.47599 * 330.00018 * 15 13 11 19 19 C 1.50703 * 109.46638 * 274.99868 * 8 7 5 20 20 C 1.38228 * 120.00282 * 319.72635 * 19 8 7 21 21 C 1.38230 * 120.00097 * 179.79029 * 20 19 8 22 22 C 1.38240 * 120.00190 * 0.44082 * 21 20 19 23 23 C 1.38232 * 119.99571 * 359.81290 * 22 21 20 24 24 C 1.38236 * 120.00307 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47020 * 264.38236 * 1 2 3 26 26 H 1.09001 * 109.47602 * 24.38737 * 1 2 3 27 27 H 1.09003 * 109.47040 * 144.38650 * 1 2 3 28 28 H 1.09007 * 109.46963 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47841 * 300.00185 * 3 2 1 30 30 H 1.09001 * 109.47184 * 60.00444 * 3 2 1 31 31 H 1.08000 * 120.00353 * 172.56557 * 4 2 1 32 32 H 0.97001 * 120.00398 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47388 * 54.99698 * 10 8 7 34 34 H 1.09007 * 109.47007 * 174.99948 * 10 8 7 35 35 H 0.96992 * 119.99984 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.99760 * 359.97438 * 20 19 8 37 37 H 1.08001 * 120.00469 * 180.27290 * 21 20 19 38 38 H 1.07998 * 120.00355 * 179.83765 * 22 21 20 39 39 H 1.08000 * 119.99777 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.00149 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4451 -2.4208 0.1579 6 8 0.2529 -2.4129 0.3979 7 7 2.1004 -3.5923 0.0369 8 6 1.3764 -4.8562 0.1942 9 1 0.3678 -4.7492 -0.2053 10 6 2.1111 -5.9626 -0.5652 11 6 2.0781 -5.6655 -2.0423 12 1 1.5830 -4.7761 -2.4032 13 6 2.6800 -6.5290 -2.9329 14 7 2.6517 -6.2694 -4.2218 15 14 3.5369 -8.0669 -2.3084 16 1 2.5659 -9.1894 -2.2597 17 1 4.6531 -8.4174 -3.2231 18 1 4.0730 -7.8165 -0.9464 19 6 1.3024 -5.2141 1.6562 20 6 2.3973 -5.0084 2.4744 21 6 2.3279 -5.3326 3.8164 22 6 1.1666 -5.8711 4.3383 23 6 0.0734 -6.0817 3.5189 24 6 0.1413 -5.7534 2.1778 25 1 -0.3633 -0.1006 1.0228 26 1 -0.3634 0.9360 -0.4243 27 1 -0.3633 -0.8355 -0.5984 28 1 3.3321 1.1060 -0.0005 29 1 1.9971 1.8768 -0.8899 30 1 1.9971 1.8767 0.8900 31 1 3.2451 -1.1556 -0.1215 32 1 3.0513 -3.5986 -0.1542 33 1 3.1462 -6.0097 -0.2271 34 1 1.6231 -6.9189 -0.3760 35 1 3.0748 -6.8770 -4.8483 36 1 3.3060 -4.5915 2.0658 37 1 3.1819 -5.1678 4.4567 38 1 1.1133 -6.1269 5.3862 39 1 -0.8340 -6.5020 3.9267 40 1 -0.7129 -5.9175 1.5378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153592403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:00 Heat of formation + Delta-G solvation = -8.406415 kcal Electronic energy + Delta-G solvation = -20711.572971 eV Core-core repulsion = 17684.046151 eV Total energy + Delta-G solvation = -3027.526820 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71400 -38.58025 -35.81830 -34.66922 -32.64606 -31.28958 -30.53880 -29.33580 -27.85322 -27.43803 -24.90288 -22.34201 -21.75382 -21.17834 -19.74281 -18.36064 -17.09566 -16.57867 -16.36194 -15.37771 -15.00023 -14.44872 -14.37848 -14.13941 -13.95801 -13.55842 -13.33612 -13.07731 -12.83277 -12.60759 -12.39166 -12.27568 -12.13748 -11.80967 -11.51936 -11.39782 -11.31596 -11.06777 -10.72229 -10.59346 -10.14841 -9.84027 -9.33241 -9.11427 -8.93023 -8.62630 -8.58995 -8.33768 -8.25606 -6.10498 -4.10076 1.65566 1.70736 1.72614 3.25993 3.34243 3.36570 3.77344 3.85912 4.19083 4.38511 4.95986 5.00061 5.19084 5.20442 5.23433 5.29115 5.41074 5.46448 5.48354 5.62052 5.79454 5.83411 5.83627 5.85629 6.02631 6.06688 6.25521 6.31470 6.34025 6.45234 6.68126 6.75784 6.76335 6.77937 6.87748 6.95487 7.09140 7.32540 7.39289 7.66055 8.21008 8.45132 8.86265 8.95747 9.50369 11.02350 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.007130 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.993751 B = 3926.170219 C = 5847.962301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.123 4.123 4 C -0.222 4.222 5 C 0.543 3.457 6 O -0.550 6.550 7 N -0.698 5.698 8 C 0.195 3.805 9 H 0.091 0.909 10 C -0.014 4.014 11 C -0.520 4.520 12 H 0.076 0.924 13 C 0.070 3.930 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.075 4.075 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.401 0.599 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 8.243 13.359 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.050 4.050 3 C -0.179 4.179 4 C -0.243 4.243 5 C 0.332 3.668 6 O -0.431 6.431 7 N -0.346 5.346 8 C 0.090 3.910 9 H 0.109 0.891 10 C -0.051 4.051 11 C -0.557 4.557 12 H 0.094 0.906 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.126 4.126 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.235 0.765 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.503 8.152 13.327 15.630 hybrid contribution 1.116 -0.969 0.040 1.478 sum 0.613 7.183 13.366 15.187 Atomic orbital electron populations 1.21083 0.91044 1.02182 1.03366 1.22443 0.96824 0.94284 0.91483 1.20962 0.99782 0.94718 1.02480 1.22499 1.00156 0.92395 1.09223 1.18483 0.86970 0.84344 0.77001 1.90703 1.15097 1.87707 1.49572 1.45804 1.12847 1.05091 1.70840 1.19925 0.98171 0.84065 0.88837 0.89070 1.19869 0.95553 0.93277 0.96448 1.21023 1.36210 1.09985 0.88530 0.90603 1.24988 0.95723 0.97704 0.94722 1.69905 1.44632 1.37594 1.01535 0.86855 0.79752 0.84001 0.79142 1.20202 1.21355 1.18989 1.20598 0.93404 0.96699 0.96927 1.20932 0.98297 1.00053 0.93421 1.21051 0.97827 1.00084 0.95386 1.21010 0.93857 1.01062 0.99297 1.21057 0.98371 1.00722 0.93932 1.21044 0.97628 0.98794 0.95153 0.90777 0.93237 0.89012 0.91588 0.90986 0.90857 0.85921 0.76508 0.95895 0.95333 0.92653 0.86504 0.86700 0.86793 0.86536 0.86046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.48 36.01 0.31 -1.38 16 2 C -0.05 -0.64 6.11 -101.17 -0.62 -1.26 16 3 C -0.12 -1.17 10.10 36.01 0.36 -0.81 16 4 C -0.22 -3.29 9.62 -37.81 -0.36 -3.65 16 5 C 0.54 9.97 7.57 -12.66 -0.10 9.88 16 6 O -0.55 -11.45 12.94 5.27 0.07 -11.38 16 7 N -0.70 -12.84 4.04 -56.12 -0.23 -13.07 16 8 C 0.19 3.92 2.11 -69.08 -0.15 3.77 16 9 H 0.09 2.03 7.44 -51.93 -0.39 1.65 16 10 C -0.01 -0.31 3.56 -27.89 -0.10 -0.41 16 11 C -0.52 -14.07 9.39 -34.44 -0.32 -14.39 16 12 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 15 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 19 C -0.08 -1.36 4.91 -104.62 -0.51 -1.87 16 20 C -0.11 -1.77 9.32 -39.59 -0.37 -2.14 16 21 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16 23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 24 C -0.11 -1.81 9.67 -39.58 -0.38 -2.20 16 25 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 26 H 0.05 0.57 8.09 -51.93 -0.42 0.14 16 27 H 0.09 1.55 6.14 -51.93 -0.32 1.24 16 28 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.12 1.53 7.88 -52.49 -0.41 1.11 16 32 H 0.40 6.75 8.59 -40.82 -0.35 6.40 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 34 H 0.03 0.66 7.57 -51.92 -0.39 0.26 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.77 7.73 -52.48 -0.41 1.37 16 37 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 336.90 15.07 5.08 5.08 Total: -1.00 -31.62 336.90 -8.52 -40.14 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.01 Total: 8.27 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -3.53 Total: -19.19 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.55 Total: -39.26 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.62 -8.52 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153592403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.732 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds