Wall clock time and date at job start Mon Mar 30 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50699 * 119.99557 * 2 1 4 4 C 1.32989 * 120.00063 * 180.02562 * 2 1 3 5 5 C 1.47105 * 120.00109 * 352.83087 * 4 2 1 6 6 O 1.21612 * 120.00112 * 354.01548 * 5 4 2 7 7 N 1.34773 * 119.99812 * 174.01082 * 5 4 2 8 8 C 1.46506 * 119.99842 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46748 * 34.99618 * 8 7 5 10 10 C 1.52990 * 109.47156 * 154.99976 * 8 7 5 11 11 C 1.50703 * 109.47422 * 294.99653 * 10 8 7 12 12 H 1.08001 * 119.99408 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00392 * 180.02562 * 11 10 8 14 14 N 1.31515 * 120.00201 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99581 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.47118 * 90.00737 * 15 13 11 17 17 H 1.48506 * 109.46672 * 209.99902 * 15 13 11 18 18 H 1.48496 * 109.47599 * 330.00018 * 15 13 11 19 19 C 1.50703 * 109.46638 * 274.99868 * 8 7 5 20 20 C 1.38228 * 120.00282 * 319.72635 * 19 8 7 21 21 C 1.38230 * 120.00097 * 179.79029 * 20 19 8 22 22 C 1.38240 * 120.00190 * 0.44082 * 21 20 19 23 23 C 1.38232 * 119.99571 * 359.81290 * 22 21 20 24 24 C 1.38236 * 120.00307 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47020 * 264.38236 * 1 2 3 26 26 H 1.09001 * 109.47602 * 24.38737 * 1 2 3 27 27 H 1.09003 * 109.47040 * 144.38650 * 1 2 3 28 28 H 1.09007 * 109.46963 * 180.02562 * 3 2 1 29 29 H 1.08993 * 109.47841 * 300.00185 * 3 2 1 30 30 H 1.09001 * 109.47184 * 60.00444 * 3 2 1 31 31 H 1.08000 * 120.00353 * 172.56557 * 4 2 1 32 32 H 0.97001 * 120.00398 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.47388 * 54.99698 * 10 8 7 34 34 H 1.09007 * 109.47007 * 174.99948 * 10 8 7 35 35 H 0.96992 * 119.99984 * 180.02562 * 14 13 11 36 36 H 1.08007 * 119.99760 * 359.97438 * 20 19 8 37 37 H 1.08001 * 120.00469 * 180.27290 * 21 20 19 38 38 H 1.07998 * 120.00355 * 179.83765 * 22 21 20 39 39 H 1.08000 * 119.99777 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.00149 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4451 -2.4208 0.1579 6 8 0.2529 -2.4129 0.3979 7 7 2.1004 -3.5923 0.0369 8 6 1.3764 -4.8562 0.1942 9 1 0.3678 -4.7492 -0.2053 10 6 2.1111 -5.9626 -0.5652 11 6 2.0781 -5.6655 -2.0423 12 1 1.5830 -4.7761 -2.4032 13 6 2.6800 -6.5290 -2.9329 14 7 2.6517 -6.2694 -4.2218 15 14 3.5369 -8.0669 -2.3084 16 1 2.5659 -9.1894 -2.2597 17 1 4.6531 -8.4174 -3.2231 18 1 4.0730 -7.8165 -0.9464 19 6 1.3024 -5.2141 1.6562 20 6 2.3973 -5.0084 2.4744 21 6 2.3279 -5.3326 3.8164 22 6 1.1666 -5.8711 4.3383 23 6 0.0734 -6.0817 3.5189 24 6 0.1413 -5.7534 2.1778 25 1 -0.3633 -0.1006 1.0228 26 1 -0.3634 0.9360 -0.4243 27 1 -0.3633 -0.8355 -0.5984 28 1 3.3321 1.1060 -0.0005 29 1 1.9971 1.8768 -0.8899 30 1 1.9971 1.8767 0.8900 31 1 3.2451 -1.1556 -0.1215 32 1 3.0513 -3.5986 -0.1542 33 1 3.1462 -6.0097 -0.2271 34 1 1.6231 -6.9189 -0.3760 35 1 3.0748 -6.8770 -4.8483 36 1 3.3060 -4.5915 2.0658 37 1 3.1819 -5.1678 4.4567 38 1 1.1133 -6.1269 5.3862 39 1 -0.8340 -6.5020 3.9267 40 1 -0.7129 -5.9175 1.5378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153592403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:59 Heat of formation + Delta-G solvation = -26.899911 kcal Electronic energy + Delta-G solvation = -20712.374909 eV Core-core repulsion = 17684.046151 eV Total energy + Delta-G solvation = -3028.328758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11522 -39.83969 -37.17874 -36.00612 -34.68544 -32.75241 -31.71383 -30.98923 -28.90599 -28.59076 -26.56136 -23.61143 -23.32636 -22.55215 -21.21126 -19.62342 -19.05548 -17.93479 -17.69557 -16.81686 -16.39753 -16.15836 -15.68986 -15.43359 -15.20646 -14.84049 -14.58833 -14.52554 -14.21204 -14.12067 -13.79355 -13.54644 -13.27648 -13.18020 -13.03617 -12.68094 -12.50981 -12.41532 -12.36873 -11.93563 -11.74262 -11.73062 -11.43154 -10.80475 -10.54344 -10.16073 -9.79409 -9.72892 -9.53384 -8.29192 -6.34102 0.46859 0.50924 0.54826 1.36519 1.37212 1.48737 2.34689 2.38414 2.49813 2.96492 3.06678 3.86866 3.95995 3.96723 4.02417 4.19891 4.30770 4.31930 4.43911 4.56927 4.58930 4.71262 4.72576 4.75525 4.81145 4.93089 5.00800 5.05974 5.13634 5.17459 5.20277 5.27593 5.53791 5.55961 5.62100 5.63476 5.65329 5.69750 5.90076 6.17107 6.25120 6.71633 6.79251 7.29772 7.43382 8.87297 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.007130 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.993751 B = 3926.170219 C = 5847.962301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.033 4.033 3 C -0.119 4.119 4 C -0.247 4.247 5 C 0.533 3.467 6 O -0.585 6.585 7 N -0.697 5.697 8 C 0.205 3.795 9 H 0.053 0.947 10 C -0.004 4.004 11 C -0.520 4.520 12 H 0.030 0.970 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.243 1.243 19 C -0.099 4.099 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.407 0.593 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 8.465 16.364 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.035 4.035 3 C -0.175 4.175 4 C -0.268 4.268 5 C 0.324 3.676 6 O -0.468 6.468 7 N -0.346 5.346 8 C 0.100 3.900 9 H 0.071 0.929 10 C -0.041 4.041 11 C -0.558 4.558 12 H 0.048 0.952 13 C -0.186 4.186 14 N -0.588 5.588 15 Si 0.770 3.230 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.166 1.166 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.151 4.151 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.166 0.834 32 H 0.242 0.758 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.201 8.385 16.347 18.411 hybrid contribution 0.461 -0.925 -0.890 1.364 sum 1.662 7.460 15.457 17.243 Atomic orbital electron populations 1.21032 0.92064 1.02129 1.02536 1.22869 0.96485 0.95740 0.88390 1.21046 1.00003 0.92459 1.04031 1.22547 1.01266 0.90930 1.12020 1.19173 0.86828 0.85398 0.76192 1.90681 1.16650 1.88242 1.51267 1.45773 1.13042 1.04817 1.70963 1.19514 0.95877 0.84105 0.90532 0.92905 1.19719 0.96540 0.94175 0.93703 1.21192 1.35128 1.08311 0.91167 0.95212 1.25911 0.96631 1.01391 0.94693 1.70063 1.46279 1.39312 1.03145 0.85723 0.78535 0.79233 0.79535 1.19734 1.20921 1.16619 1.20405 0.95070 0.99001 0.95576 1.21094 0.97876 1.00440 0.94455 1.21446 0.99206 0.98808 0.94660 1.21482 0.92897 0.99235 1.00911 1.21383 0.99977 0.99960 0.92770 1.21177 0.97245 0.99955 0.96678 0.91300 0.90313 0.92676 0.90257 0.89473 0.88871 0.83431 0.75757 0.94545 0.95407 0.92495 0.85890 0.83485 0.83108 0.83900 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.42 8.48 71.24 0.60 -2.81 16 2 C -0.03 -0.84 6.11 -17.62 -0.11 -0.95 16 3 C -0.12 -1.90 10.10 71.24 0.72 -1.18 16 4 C -0.25 -7.32 9.62 23.43 0.23 -7.09 16 5 C 0.53 20.57 7.57 86.57 0.66 21.23 16 6 O -0.58 -26.07 12.94 -4.07 -0.05 -26.12 16 7 N -0.70 -26.93 4.04 -449.71 -1.82 -28.75 16 8 C 0.21 8.70 2.11 44.24 0.09 8.79 16 9 H 0.05 2.59 7.44 -2.39 -0.02 2.57 16 10 C 0.00 -0.17 3.56 29.85 0.11 -0.07 16 11 C -0.52 -29.46 9.39 25.60 0.24 -29.22 16 12 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 13 C 0.01 0.63 5.47 84.65 0.46 1.09 16 14 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 15 Si 0.95 43.44 27.47 68.60 1.88 45.32 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 19 C -0.10 -3.64 4.91 -19.87 -0.10 -3.74 16 20 C -0.12 -3.76 9.32 22.27 0.21 -3.56 16 21 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 22 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 23 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 24 C -0.13 -4.50 9.67 22.27 0.22 -4.29 16 25 H 0.07 2.01 8.04 -2.38 -0.02 1.99 16 26 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 27 H 0.05 1.99 6.14 -2.39 -0.01 1.97 16 28 H 0.08 1.10 7.82 -2.38 -0.02 1.08 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.15 3.52 7.88 -2.91 -0.02 3.49 16 32 H 0.41 14.18 8.59 -92.71 -0.80 13.39 16 33 H 0.04 1.59 7.20 -2.39 -0.02 1.58 16 34 H 0.03 1.29 7.57 -2.38 -0.02 1.27 16 35 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.12 3.57 7.73 -2.91 -0.02 3.55 16 37 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.11 3.86 8.04 -2.91 -0.02 3.83 16 Total: -1.00 -72.89 336.90 4.48 -68.40 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.17 Total: 30.32 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.00 Total: -30.57 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -1.52 Total: -87.35 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.32 kcal Total: -72.89 4.48 -68.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153592403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.503 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds