Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.50698 * 119.99607 * 2 1 4 4 C 1.32993 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.47097 * 120.00290 * 352.84105 * 4 2 1 6 6 O 1.21623 * 120.00080 * 354.00646 * 5 4 2 7 7 N 1.34775 * 120.00259 * 174.00519 * 5 4 2 8 8 C 1.46496 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47797 * 325.00199 * 8 7 5 10 10 C 1.53010 * 109.46947 * 205.00223 * 8 7 5 11 11 C 1.50698 * 109.46769 * 65.00176 * 10 8 7 12 12 H 1.07997 * 120.00337 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99648 * 179.72367 * 11 10 8 14 14 N 1.31511 * 119.99617 * 0.27222 * 13 11 10 15 15 Si 1.86800 * 119.99926 * 180.27710 * 13 11 10 16 16 H 1.48498 * 109.46808 * 90.00152 * 15 13 11 17 17 H 1.48499 * 109.46743 * 210.00109 * 15 13 11 18 18 H 1.48492 * 109.47076 * 329.99874 * 15 13 11 19 19 C 1.50697 * 109.47280 * 85.00360 * 8 7 5 20 20 C 1.38234 * 119.99735 * 39.72481 * 19 8 7 21 21 C 1.38241 * 120.00118 * 179.79245 * 20 19 8 22 22 C 1.38237 * 119.99532 * 0.43324 * 21 20 19 23 23 C 1.38237 * 120.00129 * 359.82347 * 22 21 20 24 24 C 1.38229 * 120.00141 * 359.96806 * 23 22 21 25 25 H 1.08997 * 109.46957 * 264.39214 * 1 2 3 26 26 H 1.09005 * 109.46745 * 24.38953 * 1 2 3 27 27 H 1.09004 * 109.47067 * 144.38795 * 1 2 3 28 28 H 1.09002 * 109.46699 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47166 * 299.99542 * 3 2 1 30 30 H 1.08997 * 109.47627 * 60.00029 * 3 2 1 31 31 H 1.07994 * 119.99707 * 172.84166 * 4 2 1 32 32 H 0.96995 * 119.99885 * 0.02562 * 7 5 4 33 33 H 1.08992 * 109.46900 * 305.00068 * 10 8 7 34 34 H 1.09000 * 109.46850 * 184.99969 * 10 8 7 35 35 H 0.97001 * 119.99566 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.00264 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00255 * 180.27570 * 21 20 19 38 38 H 1.07997 * 119.99992 * 179.83306 * 22 21 20 39 39 H 1.08001 * 119.99812 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.00245 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4451 -2.4207 0.1598 6 8 0.2529 -2.4125 0.3999 7 7 2.1003 -3.5923 0.0398 8 6 1.3765 -4.8559 0.1990 9 1 0.6008 -4.7376 0.9557 10 6 2.3520 -5.9509 0.6356 11 6 2.8922 -5.6257 2.0043 12 1 2.5716 -4.7282 2.5122 13 6 3.7911 -6.4774 2.6108 14 7 4.1810 -7.5706 1.9926 15 14 4.4550 -6.0783 4.3107 16 1 3.5703 -6.6790 5.3411 17 1 5.8252 -6.6336 4.4499 18 1 4.4972 -4.6051 4.4922 19 6 0.7435 -5.2411 -1.1132 20 6 1.4311 -5.0448 -2.2962 21 6 0.8523 -5.4021 -3.4996 22 6 -0.4178 -5.9474 -3.5207 23 6 -1.1075 -6.1388 -2.3381 24 6 -0.5270 -5.7855 -1.1344 25 1 -0.3633 -0.1004 1.0227 26 1 -0.3633 0.9360 -0.4244 27 1 -0.3633 -0.8355 -0.5984 28 1 3.3322 1.1059 -0.0005 29 1 1.9972 1.8766 -0.8900 30 1 1.9972 1.8767 0.8899 31 1 3.2456 -1.1555 -0.1160 32 1 3.0512 -3.5988 -0.1513 33 1 3.1756 -6.0085 -0.0759 34 1 1.8323 -6.9085 0.6682 35 1 4.8137 -8.1696 2.4191 36 1 2.4218 -4.6150 -2.2800 37 1 1.3913 -5.2528 -4.4236 38 1 -0.8711 -6.2240 -4.4611 39 1 -2.1000 -6.5645 -2.3547 40 1 -1.0656 -5.9355 -0.2105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153592512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = -12.499449 kcal Electronic energy + Delta-G solvation = -20684.824862 eV Core-core repulsion = 17657.120555 eV Total energy + Delta-G solvation = -3027.704307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.65258 -38.50782 -35.76554 -34.63510 -32.70994 -31.16754 -30.43513 -28.90048 -27.81425 -27.37725 -24.80812 -22.27513 -21.95726 -21.19759 -19.69056 -18.37141 -16.81172 -16.52347 -16.12974 -15.32689 -14.87717 -14.55285 -14.43646 -14.14872 -13.94961 -13.50022 -13.31397 -12.97203 -12.68638 -12.51866 -12.25477 -12.15407 -12.08627 -11.64828 -11.49158 -11.40370 -11.10163 -10.89555 -10.71234 -10.58351 -10.42119 -9.75293 -9.27728 -9.07772 -8.95329 -8.51200 -8.43813 -8.27108 -8.14509 -6.07762 -4.10922 1.64508 1.81336 1.83132 3.28346 3.35143 3.38635 3.79329 3.89593 4.28356 4.41309 4.93981 4.99519 5.28610 5.28887 5.30183 5.38096 5.41397 5.45906 5.56176 5.63510 5.75744 5.82273 5.94059 5.96873 6.00590 6.18386 6.29770 6.39156 6.46706 6.61465 6.66310 6.75385 6.87596 6.88123 7.00941 7.16166 7.43489 7.51836 7.66502 7.89333 8.24447 8.29470 8.88793 8.95140 9.53962 11.02824 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.010171 B = 0.007238 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.221907 B = 3867.544089 C = 6045.576677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.050 4.050 3 C -0.123 4.123 4 C -0.222 4.222 5 C 0.540 3.460 6 O -0.551 6.551 7 N -0.697 5.697 8 C 0.184 3.816 9 H 0.086 0.914 10 C 0.024 3.976 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.400 0.600 33 H 0.024 0.976 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.649 10.978 -8.688 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.052 4.052 3 C -0.179 4.179 4 C -0.243 4.243 5 C 0.329 3.671 6 O -0.433 6.433 7 N -0.345 5.345 8 C 0.080 3.920 9 H 0.104 0.896 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.071 4.071 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.235 0.765 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.354 10.794 -8.486 14.738 hybrid contribution 1.073 -0.014 0.862 1.376 sum -4.282 10.780 -7.624 13.881 Atomic orbital electron populations 1.21073 0.91088 1.01901 1.03527 1.22445 0.96784 0.94297 0.91709 1.20961 0.99833 0.94701 1.02446 1.22540 1.00138 0.92505 1.09070 1.18498 0.86997 0.84381 0.77211 1.90704 1.15207 1.87737 1.49603 1.45885 1.12606 1.05212 1.70788 1.20216 0.95787 0.84405 0.91624 0.89592 1.19389 0.93131 0.92253 0.96594 1.21147 1.25331 1.07712 1.01552 0.92383 1.24992 0.96453 0.94980 0.97756 1.69962 1.32995 1.12211 1.37960 0.86592 0.78188 0.78605 0.84640 1.20637 1.21252 1.19881 1.20569 0.93942 0.96431 0.96140 1.20914 0.99666 1.00012 0.91989 1.21040 0.95667 1.00031 0.97603 1.20986 0.95415 1.01283 0.97711 1.21034 0.99647 1.00742 0.92697 1.21015 0.94865 0.98917 0.97910 0.90636 0.93358 0.89188 0.91552 0.91145 0.90761 0.85932 0.76523 0.95767 0.94841 0.92895 0.86578 0.86778 0.86885 0.86650 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 8.48 36.01 0.31 -1.32 16 2 C -0.05 -0.65 6.11 -101.16 -0.62 -1.27 16 3 C -0.12 -1.15 10.10 36.00 0.36 -0.79 16 4 C -0.22 -3.24 9.62 -37.81 -0.36 -3.61 16 5 C 0.54 9.90 7.57 -12.67 -0.10 9.80 16 6 O -0.55 -11.47 12.94 5.26 0.07 -11.40 16 7 N -0.70 -12.99 4.02 -56.12 -0.23 -13.21 16 8 C 0.18 3.83 2.12 -69.08 -0.15 3.68 16 9 H 0.09 1.96 7.44 -51.93 -0.39 1.57 16 10 C 0.02 0.58 4.50 -27.88 -0.13 0.45 16 11 C -0.52 -13.92 8.84 -34.44 -0.30 -14.23 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.07 -1.32 4.91 -104.62 -0.51 -1.83 16 20 C -0.11 -1.85 9.33 -39.58 -0.37 -2.22 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -1.97 10.05 -39.58 -0.40 -2.37 16 23 C -0.12 -1.89 10.05 -39.58 -0.40 -2.29 16 24 C -0.11 -1.93 9.67 -39.58 -0.38 -2.31 16 25 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 26 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.09 1.44 6.14 -51.93 -0.32 1.13 16 28 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.12 1.52 7.88 -52.49 -0.41 1.11 16 32 H 0.40 6.89 8.58 -40.82 -0.35 6.54 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.12 1.88 7.71 -52.49 -0.40 1.48 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 2.04 8.04 -52.49 -0.42 1.62 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -30.82 340.47 -8.89 -39.72 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.04 Total: 7.66 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.54 Total: -19.05 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.51 Total: -38.27 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.82 -8.89 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153592512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.216 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds