Wall clock time and date at job start Mon Mar 30 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.50698 * 119.99607 * 2 1 4 4 C 1.32993 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.47097 * 120.00290 * 352.84105 * 4 2 1 6 6 O 1.21623 * 120.00080 * 354.00646 * 5 4 2 7 7 N 1.34775 * 120.00259 * 174.00519 * 5 4 2 8 8 C 1.46496 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47797 * 325.00199 * 8 7 5 10 10 C 1.53010 * 109.46947 * 205.00223 * 8 7 5 11 11 C 1.50698 * 109.46769 * 65.00176 * 10 8 7 12 12 H 1.07997 * 120.00337 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99648 * 179.72367 * 11 10 8 14 14 N 1.31511 * 119.99617 * 0.27222 * 13 11 10 15 15 Si 1.86800 * 119.99926 * 180.27710 * 13 11 10 16 16 H 1.48498 * 109.46808 * 90.00152 * 15 13 11 17 17 H 1.48499 * 109.46743 * 210.00109 * 15 13 11 18 18 H 1.48492 * 109.47076 * 329.99874 * 15 13 11 19 19 C 1.50697 * 109.47280 * 85.00360 * 8 7 5 20 20 C 1.38234 * 119.99735 * 39.72481 * 19 8 7 21 21 C 1.38241 * 120.00118 * 179.79245 * 20 19 8 22 22 C 1.38237 * 119.99532 * 0.43324 * 21 20 19 23 23 C 1.38237 * 120.00129 * 359.82347 * 22 21 20 24 24 C 1.38229 * 120.00141 * 359.96806 * 23 22 21 25 25 H 1.08997 * 109.46957 * 264.39214 * 1 2 3 26 26 H 1.09005 * 109.46745 * 24.38953 * 1 2 3 27 27 H 1.09004 * 109.47067 * 144.38795 * 1 2 3 28 28 H 1.09002 * 109.46699 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47166 * 299.99542 * 3 2 1 30 30 H 1.08997 * 109.47627 * 60.00029 * 3 2 1 31 31 H 1.07994 * 119.99707 * 172.84166 * 4 2 1 32 32 H 0.96995 * 119.99885 * 0.02562 * 7 5 4 33 33 H 1.08992 * 109.46900 * 305.00068 * 10 8 7 34 34 H 1.09000 * 109.46850 * 184.99969 * 10 8 7 35 35 H 0.97001 * 119.99566 * 179.97438 * 14 13 11 36 36 H 1.08002 * 120.00264 * 359.97438 * 20 19 8 37 37 H 1.08000 * 120.00255 * 180.27570 * 21 20 19 38 38 H 1.07997 * 119.99992 * 179.83306 * 22 21 20 39 39 H 1.08001 * 119.99812 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.00245 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4451 -2.4207 0.1598 6 8 0.2529 -2.4125 0.3999 7 7 2.1003 -3.5923 0.0398 8 6 1.3765 -4.8559 0.1990 9 1 0.6008 -4.7376 0.9557 10 6 2.3520 -5.9509 0.6356 11 6 2.8922 -5.6257 2.0043 12 1 2.5716 -4.7282 2.5122 13 6 3.7911 -6.4774 2.6108 14 7 4.1810 -7.5706 1.9926 15 14 4.4550 -6.0783 4.3107 16 1 3.5703 -6.6790 5.3411 17 1 5.8252 -6.6336 4.4499 18 1 4.4972 -4.6051 4.4922 19 6 0.7435 -5.2411 -1.1132 20 6 1.4311 -5.0448 -2.2962 21 6 0.8523 -5.4021 -3.4996 22 6 -0.4178 -5.9474 -3.5207 23 6 -1.1075 -6.1388 -2.3381 24 6 -0.5270 -5.7855 -1.1344 25 1 -0.3633 -0.1004 1.0227 26 1 -0.3633 0.9360 -0.4244 27 1 -0.3633 -0.8355 -0.5984 28 1 3.3322 1.1059 -0.0005 29 1 1.9972 1.8766 -0.8900 30 1 1.9972 1.8767 0.8899 31 1 3.2456 -1.1555 -0.1160 32 1 3.0512 -3.5988 -0.1513 33 1 3.1756 -6.0085 -0.0759 34 1 1.8323 -6.9085 0.6682 35 1 4.8137 -8.1696 2.4191 36 1 2.4218 -4.6150 -2.2800 37 1 1.3913 -5.2528 -4.4236 38 1 -0.8711 -6.2240 -4.4611 39 1 -2.1000 -6.5645 -2.3547 40 1 -1.0656 -5.9355 -0.2105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153592512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:03 Heat of formation + Delta-G solvation = -29.370858 kcal Electronic energy + Delta-G solvation = -20685.556461 eV Core-core repulsion = 17657.120555 eV Total energy + Delta-G solvation = -3028.435906 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08981 -39.82061 -37.14349 -35.99225 -34.71480 -32.63451 -31.70546 -30.59214 -28.82147 -28.56045 -26.57895 -23.81647 -23.44396 -22.53619 -21.19070 -19.62683 -18.62677 -17.90107 -17.65434 -16.85034 -16.41143 -16.24582 -15.72955 -15.39424 -15.12625 -14.72506 -14.60669 -14.35218 -14.19357 -13.99853 -13.67841 -13.45404 -13.25779 -13.15534 -12.91494 -12.68211 -12.61049 -12.46819 -12.37139 -12.12837 -11.87897 -11.59586 -11.32576 -10.65671 -10.45549 -10.16932 -9.78489 -9.71310 -9.51444 -8.21677 -6.32055 0.48183 0.52321 0.55324 1.38337 1.39535 1.50213 2.38594 2.42289 2.49197 2.98165 3.12492 3.88966 3.97684 4.01946 4.03089 4.20444 4.31627 4.34829 4.48618 4.59026 4.65149 4.72341 4.75494 4.78691 4.82808 4.94174 5.06928 5.12288 5.19256 5.20420 5.31326 5.42045 5.58108 5.60643 5.62883 5.64958 5.70559 5.76837 5.94266 6.15266 6.19852 6.80301 6.80965 7.36653 7.44858 8.89141 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.010171 B = 0.007238 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.221907 B = 3867.544089 C = 6045.576677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.031 4.031 3 C -0.120 4.120 4 C -0.247 4.247 5 C 0.533 3.467 6 O -0.585 6.585 7 N -0.696 5.696 8 C 0.201 3.799 9 H 0.055 0.945 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.052 0.948 13 C 0.010 3.990 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.278 1.278 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.097 4.097 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.134 4.134 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.406 0.594 33 H 0.011 0.989 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.119 0.881 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 12.836 -9.927 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.033 4.033 3 C -0.176 4.176 4 C -0.267 4.267 5 C 0.324 3.676 6 O -0.469 6.469 7 N -0.345 5.345 8 C 0.095 3.905 9 H 0.073 0.927 10 C 0.001 3.999 11 C -0.568 4.568 12 H 0.070 0.930 13 C -0.189 4.189 14 N -0.566 5.566 15 Si 0.783 3.217 16 H -0.204 1.204 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.152 4.152 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.164 0.836 32 H 0.241 0.759 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.162 0.838 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.032 12.666 -9.731 16.746 hybrid contribution 0.875 -0.566 1.182 1.576 sum -4.158 12.100 -8.549 15.388 Atomic orbital electron populations 1.21034 0.91892 1.02351 1.02428 1.22865 0.96553 0.95589 0.88294 1.21049 0.99963 0.92551 1.04061 1.22530 1.01132 0.90939 1.12146 1.19175 0.86843 0.85278 0.76266 1.90685 1.16735 1.88231 1.51205 1.45802 1.12796 1.04795 1.71060 1.19679 0.94082 0.84346 0.92358 0.92671 1.19125 0.93017 0.92201 0.95572 1.21391 1.25374 1.07475 1.02556 0.93009 1.25802 0.96715 0.94763 1.01585 1.70073 1.33665 1.13153 1.39687 0.85556 0.77668 0.78676 0.79800 1.20386 1.20408 1.19108 1.20465 0.95042 0.98633 0.95715 1.21065 0.99971 1.00632 0.92346 1.21442 0.96152 0.98806 0.97822 1.21471 0.94922 0.99447 0.98854 1.21386 1.00858 0.99872 0.91977 1.21167 0.94934 1.00075 0.99071 0.91861 0.90156 0.92083 0.90427 0.88963 0.89313 0.83621 0.75861 0.97067 0.97960 0.92676 0.86324 0.83559 0.83000 0.83791 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 8.48 71.24 0.60 -2.58 16 2 C -0.03 -0.75 6.11 -17.61 -0.11 -0.86 16 3 C -0.12 -1.81 10.10 71.24 0.72 -1.09 16 4 C -0.25 -7.08 9.62 23.43 0.23 -6.85 16 5 C 0.53 20.24 7.57 86.57 0.66 20.90 16 6 O -0.59 -25.62 12.94 -4.10 -0.05 -25.68 16 7 N -0.70 -27.24 4.02 -449.70 -1.81 -29.04 16 8 C 0.20 8.93 2.12 44.25 0.09 9.03 16 9 H 0.06 2.74 7.44 -2.39 -0.02 2.73 16 10 C 0.04 1.98 4.50 29.85 0.13 2.12 16 11 C -0.53 -29.54 8.84 25.60 0.23 -29.32 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 13 C 0.01 0.56 5.46 84.66 0.46 1.02 16 14 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 15 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 C -0.10 -3.88 4.91 -19.87 -0.10 -3.98 16 20 C -0.12 -4.24 9.33 22.27 0.21 -4.03 16 21 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 22 C -0.13 -3.40 10.05 22.27 0.22 -3.17 16 23 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 24 C -0.13 -4.95 9.67 22.27 0.22 -4.73 16 25 H 0.06 1.83 8.04 -2.39 -0.02 1.81 16 26 H 0.08 1.57 8.09 -2.38 -0.02 1.55 16 27 H 0.06 2.00 6.14 -2.39 -0.01 1.99 16 28 H 0.08 1.04 7.82 -2.39 -0.02 1.03 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.15 3.40 7.88 -2.91 -0.02 3.38 16 32 H 0.41 14.58 8.58 -92.71 -0.80 13.79 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.12 3.92 7.71 -2.91 -0.02 3.90 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 40 H 0.11 4.12 8.04 -2.91 -0.02 4.10 16 Total: -1.00 -69.67 340.47 4.69 -64.98 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.23 Total: 28.46 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 4.01 Total: -30.28 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.52 Total: -83.59 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -69.67 4.69 -64.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153592512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.609 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds