Wall clock time and date at job start Mon Mar 30 2020 01:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00122 * 2 1 4 4 C 1.52998 * 109.47366 * 125.00789 * 3 2 1 5 5 C 1.50695 * 109.47366 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00284 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.72368 * 5 4 3 8 8 C 1.46503 * 120.00040 * 175.34598 * 7 5 4 9 9 H 1.09003 * 109.46946 * 38.57415 * 8 7 5 10 10 C 1.53001 * 109.47048 * 158.57143 * 8 7 5 11 11 C 1.50700 * 109.47288 * 294.53293 * 10 8 7 12 12 H 1.08001 * 119.99898 * 354.98990 * 11 10 8 13 13 C 1.37878 * 120.00052 * 174.98463 * 11 10 8 14 14 N 1.31513 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47090 * 90.00455 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00342 * 15 13 11 18 18 H 1.48499 * 109.47308 * 330.00544 * 15 13 11 19 19 C 1.50696 * 109.47126 * 278.57265 * 8 7 5 20 20 C 1.38232 * 119.99904 * 319.72733 * 19 8 7 21 21 C 1.38234 * 120.00184 * 179.78908 * 20 19 8 22 22 C 1.38240 * 119.99558 * 0.43727 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.81385 * 22 21 20 24 24 C 1.38233 * 120.00042 * 140.00169 * 19 8 7 25 25 H 1.08002 * 120.00494 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99666 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99666 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47500 * 4.99972 * 3 2 1 29 29 H 1.09008 * 109.47087 * 245.00502 * 3 2 1 30 30 H 1.08995 * 109.47479 * 59.99170 * 4 3 2 31 31 H 1.09008 * 109.46783 * 299.99899 * 4 3 2 32 32 H 0.96998 * 120.00364 * 355.33878 * 7 5 4 33 33 H 1.09000 * 109.47246 * 54.53130 * 10 8 7 34 34 H 1.09004 * 109.46725 * 174.53252 * 10 8 7 35 35 H 0.97000 * 120.00045 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00180 * 359.97438 * 20 19 8 37 37 H 1.07997 * 120.00685 * 180.27366 * 21 20 19 38 38 H 1.08001 * 119.99928 * 179.83720 * 22 21 20 39 39 H 1.08004 * 120.00270 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00151 * 359.97291 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0352 1.3330 1.1815 5 6 3.7882 2.6383 1.1818 6 8 3.5697 3.4648 0.3215 7 7 4.7010 2.8894 2.1412 8 6 5.5056 4.1124 2.0846 9 1 4.8866 4.9387 1.7349 10 6 6.0440 4.4336 3.4802 11 6 4.8955 4.7660 4.3976 12 1 3.8915 4.8290 4.0047 13 6 5.1265 4.9895 5.7384 14 7 6.3492 4.9131 6.2166 15 14 3.7029 5.4022 6.8753 16 1 3.1379 4.1486 7.4362 17 1 4.1877 6.2653 7.9822 18 1 2.6515 6.1206 6.1114 19 6 6.6586 3.9116 1.1353 20 6 7.3383 2.7081 1.1182 21 6 8.3932 2.5223 0.2443 22 6 8.7741 3.5434 -0.6061 23 6 8.0978 4.7488 -0.5854 24 6 7.0402 4.9330 0.2856 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6212 1.4026 -0.9315 30 1 3.7400 0.5064 1.0919 31 1 2.4774 1.2354 2.1130 32 1 4.8251 2.2605 2.8691 33 1 6.5819 3.5694 3.8700 34 1 6.7205 5.2863 3.4213 35 1 6.5118 5.0707 7.1598 36 1 7.0433 1.9117 1.7854 37 1 8.9214 1.5805 0.2278 38 1 9.6000 3.3993 -1.2870 39 1 8.3956 5.5467 -1.2495 40 1 6.5117 5.8748 0.3017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153681831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:49 Heat of formation + Delta-G solvation = -15.194153 kcal Electronic energy + Delta-G solvation = -20451.848813 eV Core-core repulsion = 17424.027655 eV Total energy + Delta-G solvation = -3027.821158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.64740 -38.44978 -35.62158 -34.89995 -32.73762 -31.43474 -30.50482 -30.15004 -28.73977 -25.26258 -23.89144 -22.28222 -21.94430 -20.20723 -19.77710 -19.60503 -16.95017 -16.42907 -16.16214 -15.72813 -15.32869 -14.90628 -14.58715 -14.45524 -14.07832 -13.53643 -13.24214 -13.00020 -12.65742 -12.57935 -12.34167 -12.11263 -12.00331 -11.52662 -11.15746 -11.05404 -10.96713 -10.90301 -10.73734 -10.60190 -10.48036 -9.75395 -9.51788 -9.33371 -9.19454 -8.54468 -8.46732 -8.38172 -8.16993 -6.10240 -4.13693 1.78598 1.80828 2.20847 3.16839 3.25881 3.33558 3.37714 3.80634 4.25088 4.39014 4.87795 4.99529 5.21091 5.25882 5.26400 5.28045 5.31920 5.36856 5.47103 5.56633 5.73769 5.81569 5.91626 5.95060 6.01712 6.18904 6.22786 6.36451 6.44942 6.56357 6.59532 6.72560 6.85186 6.85818 6.95629 7.12647 7.41216 7.49493 7.62621 7.86555 8.17546 8.25996 8.81723 8.92344 9.51404 11.00239 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.007013 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.011364 B = 3991.810039 C = 6516.050578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.509 3.491 6 O -0.553 6.553 7 N -0.702 5.702 8 C 0.183 3.817 9 H 0.084 0.916 10 C 0.023 3.977 11 C -0.520 4.520 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.070 4.070 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.109 4.109 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.402 0.598 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -8.743 -10.925 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.168 4.168 3 C -0.116 4.116 4 C -0.177 4.177 5 C 0.295 3.705 6 O -0.431 6.431 7 N -0.351 5.351 8 C 0.079 3.921 9 H 0.102 0.898 10 C -0.014 4.014 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.127 4.127 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.236 0.764 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.892 -8.120 -11.360 14.091 hybrid contribution -0.558 -0.117 1.179 1.310 sum -2.450 -8.237 -10.181 13.323 Atomic orbital electron populations 1.23853 0.96021 1.01725 1.01922 1.23019 0.96073 0.98508 0.99232 1.20487 0.97863 0.95058 0.98199 1.21611 0.98979 0.96246 1.00868 1.20582 0.79782 0.88585 0.81598 1.90650 1.66041 1.48114 1.38327 1.46008 1.38205 1.24341 1.26555 1.20209 0.88328 0.86588 0.96963 0.89783 1.19389 0.96778 0.97945 0.87289 1.21140 0.93784 1.48070 0.92837 0.92410 1.24986 0.95548 0.95313 0.98271 1.69958 1.19476 1.49442 1.14206 0.86598 0.82577 0.78404 0.80480 1.20662 1.21211 1.19852 1.20558 0.97115 0.93683 0.95800 1.20916 0.95706 0.97380 0.98634 1.21043 0.97676 0.98770 0.96853 1.20994 1.00302 0.94042 1.00022 1.21040 0.96463 0.97318 0.99276 1.21021 0.97210 0.99004 0.95471 0.88717 0.88549 0.87474 0.90782 0.90376 0.89204 0.88970 0.76356 0.95346 0.95133 0.92862 0.86531 0.86748 0.86856 0.86624 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 14.32 29.01 0.42 -1.52 16 2 C -0.15 -1.56 9.52 -36.03 -0.34 -1.90 16 3 C -0.08 -0.98 4.95 -27.89 -0.14 -1.12 16 4 C -0.14 -1.75 5.68 -27.89 -0.16 -1.91 16 5 C 0.51 8.82 7.73 -10.99 -0.08 8.73 16 6 O -0.55 -11.52 15.68 5.55 0.09 -11.43 16 7 N -0.70 -12.56 4.09 -54.93 -0.22 -12.78 16 8 C 0.18 3.75 2.11 -69.08 -0.15 3.60 16 9 H 0.08 1.89 7.49 -51.93 -0.39 1.50 16 10 C 0.02 0.56 4.47 -27.88 -0.12 0.43 16 11 C -0.52 -13.73 8.85 -34.44 -0.30 -14.04 16 12 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 15 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.07 -1.31 4.86 -104.63 -0.51 -1.82 16 20 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 21 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 22 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.12 -1.87 10.05 -39.58 -0.40 -2.26 16 24 C -0.11 -1.91 9.67 -39.58 -0.38 -2.29 16 25 H 0.09 0.78 8.06 -52.49 -0.42 0.35 16 26 H 0.10 0.95 7.84 -52.48 -0.41 0.53 16 27 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 28 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 29 H 0.08 1.03 8.10 -51.92 -0.42 0.61 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.40 6.61 8.57 -40.82 -0.35 6.26 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.12 1.83 7.73 -52.48 -0.41 1.43 16 37 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.12 2.02 8.04 -52.48 -0.42 1.60 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -30.70 345.42 -8.80 -39.50 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.15 Total: 7.63 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -3.43 Total: -19.33 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.51 Total: -37.52 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.70 -8.80 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153681831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.304 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds