Wall clock time and date at job start Mon Mar 30 2020 01:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00122 * 2 1 4 4 C 1.52998 * 109.47366 * 125.00789 * 3 2 1 5 5 C 1.50695 * 109.47366 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00284 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99918 * 179.72368 * 5 4 3 8 8 C 1.46503 * 120.00040 * 175.34598 * 7 5 4 9 9 H 1.09003 * 109.46946 * 38.57415 * 8 7 5 10 10 C 1.53001 * 109.47048 * 158.57143 * 8 7 5 11 11 C 1.50700 * 109.47288 * 294.53293 * 10 8 7 12 12 H 1.08001 * 119.99898 * 354.98990 * 11 10 8 13 13 C 1.37878 * 120.00052 * 174.98463 * 11 10 8 14 14 N 1.31513 * 119.99851 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47090 * 90.00455 * 15 13 11 17 17 H 1.48504 * 109.47083 * 210.00342 * 15 13 11 18 18 H 1.48499 * 109.47308 * 330.00544 * 15 13 11 19 19 C 1.50696 * 109.47126 * 278.57265 * 8 7 5 20 20 C 1.38232 * 119.99904 * 319.72733 * 19 8 7 21 21 C 1.38234 * 120.00184 * 179.78908 * 20 19 8 22 22 C 1.38240 * 119.99558 * 0.43727 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.81385 * 22 21 20 24 24 C 1.38233 * 120.00042 * 140.00169 * 19 8 7 25 25 H 1.08002 * 120.00494 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99666 * 359.97438 * 1 2 3 27 27 H 1.08004 * 119.99666 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47500 * 4.99972 * 3 2 1 29 29 H 1.09008 * 109.47087 * 245.00502 * 3 2 1 30 30 H 1.08995 * 109.47479 * 59.99170 * 4 3 2 31 31 H 1.09008 * 109.46783 * 299.99899 * 4 3 2 32 32 H 0.96998 * 120.00364 * 355.33878 * 7 5 4 33 33 H 1.09000 * 109.47246 * 54.53130 * 10 8 7 34 34 H 1.09004 * 109.46725 * 174.53252 * 10 8 7 35 35 H 0.97000 * 120.00045 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00180 * 359.97438 * 20 19 8 37 37 H 1.07997 * 120.00685 * 180.27366 * 21 20 19 38 38 H 1.08001 * 119.99928 * 179.83720 * 22 21 20 39 39 H 1.08004 * 120.00270 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00151 * 359.97291 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0352 1.3330 1.1815 5 6 3.7882 2.6383 1.1818 6 8 3.5697 3.4648 0.3215 7 7 4.7010 2.8894 2.1412 8 6 5.5056 4.1124 2.0846 9 1 4.8866 4.9387 1.7349 10 6 6.0440 4.4336 3.4802 11 6 4.8955 4.7660 4.3976 12 1 3.8915 4.8290 4.0047 13 6 5.1265 4.9895 5.7384 14 7 6.3492 4.9131 6.2166 15 14 3.7029 5.4022 6.8753 16 1 3.1379 4.1486 7.4362 17 1 4.1877 6.2653 7.9822 18 1 2.6515 6.1206 6.1114 19 6 6.6586 3.9116 1.1353 20 6 7.3383 2.7081 1.1182 21 6 8.3932 2.5223 0.2443 22 6 8.7741 3.5434 -0.6061 23 6 8.0978 4.7488 -0.5854 24 6 7.0402 4.9330 0.2856 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6212 1.4026 -0.9315 30 1 3.7400 0.5064 1.0919 31 1 2.4774 1.2354 2.1130 32 1 4.8251 2.2605 2.8691 33 1 6.5819 3.5694 3.8700 34 1 6.7205 5.2863 3.4213 35 1 6.5118 5.0707 7.1598 36 1 7.0433 1.9117 1.7854 37 1 8.9214 1.5805 0.2278 38 1 9.6000 3.3993 -1.2870 39 1 8.3956 5.5467 -1.2495 40 1 6.5117 5.8748 0.3017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153681831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:48 Heat of formation + Delta-G solvation = -31.785146 kcal Electronic energy + Delta-G solvation = -20452.568252 eV Core-core repulsion = 17424.027655 eV Total energy + Delta-G solvation = -3028.540597 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06838 -39.75042 -36.95557 -36.12294 -34.71775 -32.80454 -31.72395 -31.23441 -30.48284 -26.91766 -25.15390 -23.78665 -23.33841 -21.61973 -21.04372 -20.62641 -18.69585 -17.87111 -17.67161 -17.06646 -16.60584 -16.41693 -16.13397 -15.56444 -15.37481 -14.82973 -14.62704 -14.24949 -14.17826 -14.00742 -13.68498 -13.47839 -13.43056 -13.01740 -12.90654 -12.63014 -12.49462 -12.14741 -11.97771 -11.88405 -11.86404 -11.56414 -11.33969 -10.84148 -10.57714 -10.18853 -9.94170 -9.75389 -9.51423 -8.21134 -6.31519 0.51273 0.55937 1.38687 1.40827 1.42174 1.51053 1.78501 2.39363 2.43897 2.98191 3.13014 3.82304 4.00193 4.02336 4.03974 4.21054 4.23329 4.32407 4.38931 4.48597 4.51344 4.66178 4.71046 4.78348 4.79635 4.96689 5.09517 5.12993 5.20360 5.24227 5.30508 5.43004 5.61233 5.62548 5.64425 5.76492 5.77429 5.92431 5.94321 6.15735 6.20326 6.76157 6.81048 7.37184 7.41919 8.89506 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.009199 B = 0.007013 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.011364 B = 3991.810039 C = 6516.050578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C -0.075 4.075 4 C -0.126 4.126 5 C 0.504 3.496 6 O -0.593 6.593 7 N -0.699 5.699 8 C 0.199 3.801 9 H 0.052 0.948 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.051 0.949 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.956 3.044 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.135 4.135 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.128 0.872 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.409 0.591 33 H 0.016 0.984 34 H -0.001 1.001 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -10.814 -11.523 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C -0.113 4.113 4 C -0.165 4.165 5 C 0.292 3.708 6 O -0.474 6.474 7 N -0.349 5.349 8 C 0.093 3.907 9 H 0.070 0.930 10 C 0.000 4.000 11 C -0.568 4.568 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.565 5.565 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.133 0.867 26 H 0.108 0.892 27 H 0.146 0.854 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.245 0.755 33 H 0.034 0.966 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.841 -10.213 -11.953 15.830 hybrid contribution -0.536 0.560 1.300 1.513 sum -2.377 -9.653 -10.654 14.572 Atomic orbital electron populations 1.24041 0.96013 1.02459 1.00716 1.22991 0.96212 0.97937 1.00228 1.20417 0.97453 0.95910 0.97526 1.21636 0.99158 0.94032 1.01718 1.21428 0.79149 0.89769 0.80412 1.90629 1.67138 1.49879 1.39779 1.45940 1.38244 1.23490 1.27192 1.19679 0.88912 0.86906 0.95165 0.92971 1.19129 0.95508 0.96043 0.89303 1.21378 0.94028 1.47885 0.93517 0.93054 1.25764 0.97953 0.95112 0.99796 1.70066 1.21375 1.50378 1.14666 0.85583 0.79384 0.78541 0.78338 1.19276 1.20916 1.19867 1.20449 0.97424 0.95310 0.96694 1.21085 0.96516 0.96732 0.99581 1.21453 0.96681 1.00337 0.95688 1.21476 1.00491 0.93040 0.99736 1.21382 0.95348 0.98795 0.98670 1.21173 0.98709 0.98683 0.96806 0.86666 0.89211 0.85373 0.92788 0.91531 0.86194 0.87475 0.75483 0.96556 0.98231 0.92675 0.85950 0.83451 0.83075 0.83924 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.42 14.32 67.78 0.97 -2.45 16 2 C -0.16 -2.89 9.52 25.65 0.24 -2.65 16 3 C -0.08 -1.83 4.95 29.85 0.15 -1.68 16 4 C -0.13 -3.05 5.68 29.85 0.17 -2.88 16 5 C 0.50 17.73 7.73 87.66 0.68 18.41 16 6 O -0.59 -25.70 15.68 -3.04 -0.05 -25.75 16 7 N -0.70 -25.67 4.09 -446.09 -1.82 -27.50 16 8 C 0.20 8.57 2.11 44.24 0.09 8.67 16 9 H 0.05 2.54 7.49 -2.39 -0.02 2.52 16 10 C 0.04 1.90 4.47 29.85 0.13 2.03 16 11 C -0.53 -28.88 8.85 25.60 0.23 -28.65 16 12 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 13 C 0.01 0.69 5.46 84.66 0.46 1.16 16 14 N -0.93 -53.78 13.29 21.45 0.28 -53.49 16 15 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.10 -3.77 4.86 -19.87 -0.10 -3.87 16 20 C -0.12 -4.02 9.32 22.27 0.21 -3.81 16 21 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 22 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 23 C -0.12 -3.61 10.05 22.27 0.22 -3.38 16 24 C -0.14 -4.91 9.67 22.27 0.22 -4.69 16 25 H 0.12 1.55 8.06 -2.91 -0.02 1.53 16 26 H 0.09 1.67 7.84 -2.91 -0.02 1.65 16 27 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.05 1.50 7.75 -2.39 -0.02 1.48 16 29 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 30 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.41 13.59 8.57 -92.71 -0.79 12.79 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.12 3.79 7.73 -2.91 -0.02 3.77 16 37 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.11 4.03 8.04 -2.91 -0.02 4.00 16 Total: -1.00 -68.52 345.42 4.78 -63.75 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.21 Total: 27.71 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.12 Total: -30.06 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.54 Total: -80.99 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.05 Total: -25.75 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.52 4.78 -63.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153681831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.962 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds