Wall clock time and date at job start Mon Mar 30 2020 01:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 120.00260 * 2 1 4 4 C 1.53000 * 109.47005 * 125.00085 * 3 2 1 5 5 C 1.50697 * 109.47005 * 179.97438 * 4 3 2 6 6 O 1.21290 * 120.00067 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00181 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00556 * 180.02562 * 7 5 4 9 9 H 1.09009 * 109.46624 * 324.99750 * 8 7 5 10 10 C 1.52996 * 109.47466 * 205.00158 * 8 7 5 11 11 C 1.50702 * 109.47159 * 64.99479 * 10 8 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 8 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.50700 * 109.47471 * 84.99708 * 8 7 5 20 20 C 1.38233 * 119.99377 * 39.72808 * 19 8 7 21 21 C 1.38237 * 119.99600 * 179.78842 * 20 19 8 22 22 C 1.38241 * 119.99990 * 0.44354 * 21 20 19 23 23 C 1.38237 * 119.99716 * 359.81238 * 22 21 20 24 24 C 1.38228 * 120.00326 * 220.00479 * 19 8 7 25 25 H 1.07995 * 120.00153 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00026 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.99391 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47013 * 5.00585 * 3 2 1 29 29 H 1.09000 * 109.46990 * 245.00726 * 3 2 1 30 30 H 1.09003 * 109.46827 * 60.00385 * 4 3 2 31 31 H 1.08995 * 109.47370 * 300.00391 * 4 3 2 32 32 H 0.97002 * 120.00072 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.47066 * 304.99682 * 10 8 7 34 34 H 1.08994 * 109.47405 * 184.99512 * 10 8 7 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.00514 * 359.97438 * 20 19 8 37 37 H 1.08001 * 120.00058 * 180.28006 * 21 20 19 38 38 H 1.07995 * 120.00194 * 179.83256 * 22 21 20 39 39 H 1.08001 * 119.99824 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99906 * 359.97438 * 24 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7891 2.6377 1.1813 6 8 3.5706 3.4642 0.3209 7 7 4.7063 2.8863 2.1369 8 6 5.4389 4.1549 2.1370 9 1 5.6202 4.4698 1.1092 10 6 6.7761 3.9717 2.8575 11 6 7.6392 3.0128 2.0786 12 1 7.2710 2.5779 1.1611 13 6 8.9014 2.6956 2.5340 14 7 9.3499 3.2254 3.6510 15 14 9.9742 1.5130 1.5644 16 1 10.2107 2.0606 0.2044 17 1 11.2739 1.3389 2.2613 18 1 9.2907 0.1990 1.4570 19 6 4.6250 5.2052 2.8480 20 6 3.9190 4.8764 3.9901 21 6 3.1759 5.8408 4.6448 22 6 3.1313 7.1317 4.1522 23 6 3.8331 7.4590 3.0071 24 6 4.5797 6.4957 2.3549 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3587 2.1316 0.0897 29 1 2.6213 1.4026 -0.9314 30 1 3.7401 0.5064 1.0919 31 1 2.4774 1.2354 2.1130 32 1 4.8809 2.2255 2.8253 33 1 6.5990 3.5721 3.8561 34 1 7.2816 4.9342 2.9357 35 1 10.2378 3.0019 3.9715 36 1 3.9505 3.8670 4.3726 37 1 2.6279 5.5851 5.5397 38 1 2.5486 7.8845 4.6622 39 1 3.7986 8.4677 2.6225 40 1 5.1280 6.7515 1.4603 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153681952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:51 Heat of formation + Delta-G solvation = -31.762944 kcal Electronic energy + Delta-G solvation = -20443.673786 eV Core-core repulsion = 17415.134152 eV Total energy + Delta-G solvation = -3028.539635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.06786 -39.75848 -36.95482 -36.12205 -34.71461 -32.80831 -31.72984 -31.23137 -30.47992 -26.91756 -25.15349 -23.78575 -23.34414 -21.61378 -21.06291 -20.62430 -18.69607 -17.88262 -17.68156 -16.99569 -16.68657 -16.42067 -16.06314 -15.60606 -15.38357 -14.80839 -14.54862 -14.34561 -14.19556 -13.99631 -13.68550 -13.48584 -13.42998 -12.99762 -12.89981 -12.63496 -12.44662 -12.16238 -11.97090 -11.88273 -11.86341 -11.58786 -11.34244 -10.83559 -10.56668 -10.19548 -9.94263 -9.75815 -9.51889 -8.20317 -6.30821 0.51025 0.55498 1.40340 1.42077 1.42317 1.50037 1.78667 2.40022 2.43443 2.97788 3.13995 3.82508 3.99546 4.02391 4.04591 4.20552 4.22166 4.31920 4.38409 4.48945 4.51464 4.65726 4.72076 4.77707 4.79757 4.96066 5.10037 5.12600 5.19848 5.24295 5.30639 5.43020 5.60878 5.62096 5.63962 5.77131 5.77927 5.91961 5.93987 6.15807 6.20326 6.75461 6.81618 7.37803 7.41865 8.90257 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.009630 B = 0.006757 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.847066 B = 4142.999486 C = 6541.197146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C -0.075 4.075 4 C -0.126 4.126 5 C 0.504 3.496 6 O -0.593 6.593 7 N -0.698 5.698 8 C 0.199 3.801 9 H 0.054 0.946 10 C 0.038 3.962 11 C -0.530 4.530 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.926 5.926 15 Si 0.957 3.043 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.264 1.264 19 C -0.098 4.098 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.124 4.124 24 C -0.135 4.135 25 H 0.115 0.885 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.409 0.591 33 H 0.013 0.987 34 H 0.001 0.999 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 -2.306 0.224 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.113 4.113 4 C -0.165 4.165 5 C 0.292 3.708 6 O -0.475 6.475 7 N -0.348 5.348 8 C 0.093 3.907 9 H 0.072 0.928 10 C 0.001 3.999 11 C -0.568 4.568 12 H 0.072 0.928 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.782 3.218 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.188 1.188 19 C -0.099 4.099 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.154 4.154 25 H 0.133 0.867 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.245 0.755 33 H 0.031 0.969 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.818 -1.730 -0.259 15.914 hybrid contribution 1.313 -0.583 -0.237 1.455 sum -14.505 -2.313 -0.496 14.697 Atomic orbital electron populations 1.24034 0.95803 1.02551 1.00442 1.22976 0.96312 0.97847 1.00487 1.20415 0.97446 0.96009 0.97417 1.21633 0.98998 0.93896 1.02012 1.21423 0.79464 0.89684 0.80214 1.90632 1.67498 1.50222 1.39098 1.45927 1.39157 1.19171 1.30508 1.19694 0.90703 0.82272 0.97995 0.92761 1.19124 0.89827 0.95869 0.95110 1.21368 1.00241 1.26687 1.08540 0.92816 1.25789 0.99177 0.97910 0.95885 1.70069 1.18883 1.45087 1.22577 0.85628 0.77960 0.79684 0.78526 1.20194 1.20888 1.18847 1.20465 0.97670 0.95239 0.96530 1.21083 0.97562 1.00346 0.94977 1.21455 0.99036 0.93341 1.00358 1.21475 0.99822 0.97091 0.96375 1.21383 0.96985 0.99584 0.96233 1.21173 1.00267 0.93510 1.00443 0.86727 0.88867 0.85838 0.92271 0.91997 0.87042 0.86680 0.75502 0.96901 0.98102 0.92711 0.85940 0.83469 0.83077 0.83920 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.21 14.32 67.78 0.97 -2.24 16 2 C -0.16 -2.96 9.52 25.64 0.24 -2.72 16 3 C -0.08 -1.83 4.95 29.85 0.15 -1.68 16 4 C -0.13 -3.06 5.68 29.85 0.17 -2.89 16 5 C 0.50 17.71 7.79 87.66 0.68 18.39 16 6 O -0.59 -25.68 15.65 -3.06 -0.05 -25.72 16 7 N -0.70 -25.50 4.02 -446.09 -1.79 -27.29 16 8 C 0.20 8.56 2.12 44.24 0.09 8.66 16 9 H 0.05 2.64 7.44 -2.38 -0.02 2.62 16 10 C 0.04 1.93 4.50 29.85 0.13 2.06 16 11 C -0.53 -28.80 8.84 25.60 0.23 -28.57 16 12 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 13 C 0.01 0.61 5.46 84.66 0.46 1.08 16 14 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 15 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 19 C -0.10 -3.79 4.91 -19.87 -0.10 -3.89 16 20 C -0.12 -4.06 9.33 22.27 0.21 -3.85 16 21 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 22 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 23 C -0.12 -3.63 10.05 22.27 0.22 -3.40 16 24 C -0.14 -4.94 9.67 22.27 0.22 -4.72 16 25 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 26 H 0.09 1.59 7.84 -2.91 -0.02 1.57 16 27 H 0.12 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 29 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.41 13.35 8.60 -92.71 -0.80 12.56 16 33 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 36 H 0.12 3.79 7.71 -2.91 -0.02 3.77 16 37 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.11 4.05 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -68.51 345.41 4.81 -63.71 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.21 Total: 28.00 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 4.13 Total: -30.09 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.51 Total: -81.10 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -68.51 4.81 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153681952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.942 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds