Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46674 * 2 1 4 4 C 1.52996 * 115.55312 * 34.33558 * 3 2 1 5 5 C 1.53005 * 117.49850 * 248.62031 * 3 2 1 6 6 C 1.53001 * 60.00005 * 252.51318 * 5 3 2 7 7 H 1.08994 * 117.49996 * 252.50481 * 6 5 3 8 8 C 1.50701 * 117.51479 * 107.48143 * 6 5 3 9 9 O 1.21279 * 119.99909 * 291.28540 * 8 6 5 10 10 N 1.34778 * 119.99938 * 111.28278 * 8 6 5 11 11 C 1.39241 * 120.00004 * 175.70909 * 10 8 6 12 12 C 1.39475 * 119.83517 * 215.01733 * 11 10 8 13 13 C 1.36370 * 120.17120 * 179.71609 * 12 11 10 14 14 C 1.40875 * 119.82680 * 0.57541 * 13 12 11 15 15 C 1.41152 * 120.16288 * 179.67547 * 14 13 12 16 16 H 1.08000 * 119.99866 * 214.79991 * 15 14 13 17 17 C 1.39908 * 119.99840 * 34.80567 * 15 14 13 18 18 N 1.30869 * 120.00322 * 355.55309 * 17 15 14 19 19 Si 1.86803 * 119.99486 * 175.55887 * 17 15 14 20 20 H 1.48503 * 109.47401 * 89.99948 * 19 17 15 21 21 H 1.48503 * 109.46666 * 209.99752 * 19 17 15 22 22 H 1.48496 * 109.47244 * 329.99462 * 19 17 15 23 23 C 1.40867 * 119.66982 * 359.69748 * 14 13 12 24 24 C 1.36372 * 119.83170 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46710 * 299.99430 * 1 2 3 26 26 H 1.08996 * 109.47374 * 59.99770 * 1 2 3 27 27 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46826 * 240.00062 * 2 1 3 29 29 H 1.08996 * 109.47374 * 120.00230 * 2 1 3 30 30 H 1.09007 * 109.47050 * 205.66736 * 4 3 2 31 31 H 1.09000 * 109.47314 * 325.66412 * 4 3 2 32 32 H 1.08999 * 109.47744 * 85.66787 * 4 3 2 33 33 H 1.09000 * 117.49706 * 145.02180 * 5 3 2 34 34 H 1.08997 * 117.49663 * 0.02562 * 5 3 2 35 35 H 0.96996 * 120.00119 * 355.70733 * 10 8 6 36 36 H 1.08009 * 119.91448 * 359.97438 * 12 11 10 37 37 H 1.08004 * 120.08797 * 180.24751 * 13 12 11 38 38 H 0.96999 * 119.99898 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.08648 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.91948 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4446 0.7785 5 6 2.7418 1.9437 -1.2638 6 6 3.5549 1.6562 0.0000 7 1 3.9427 2.5109 0.5542 8 6 4.4306 0.4298 0.0004 9 8 3.9282 -0.6741 0.0024 10 7 5.7722 0.5596 -0.0013 11 6 6.5811 -0.5701 0.0893 12 6 7.7865 -0.5062 0.7880 13 6 8.5813 -1.6100 0.8860 14 6 8.1878 -2.8138 0.2690 15 6 9.0083 -3.9587 0.3601 16 1 9.0680 -4.6477 -0.4695 17 6 9.7441 -4.2010 1.5251 18 7 9.7403 -3.3234 2.4959 19 14 10.7320 -5.7773 1.6947 20 1 12.1043 -5.5604 1.1704 21 1 10.8047 -6.1642 3.1267 22 1 10.0724 -6.8605 0.9222 23 6 6.9716 -2.8690 -0.4398 24 6 6.1847 -1.7584 -0.5243 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.3351 3.4442 0.3705 31 1 0.1339 2.1704 0.6913 32 1 1.4777 2.4332 1.8285 33 1 2.5945 2.9875 -1.5409 34 1 2.8399 1.2458 -2.0953 35 1 6.1741 1.4400 -0.0658 36 1 8.0893 0.4189 1.2561 37 1 9.5126 -1.5600 1.4307 38 1 10.2508 -3.4914 3.3035 39 1 6.6636 -3.7882 -0.9157 40 1 5.2522 -1.7991 -1.0677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160124407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = 0.729475 kcal Electronic energy + Delta-G solvation = -20391.668469 eV Core-core repulsion = 17364.537812 eV Total energy + Delta-G solvation = -3027.130658 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18182 -38.16045 -36.68454 -34.34970 -32.93844 -32.08959 -29.56788 -29.00539 -28.25564 -25.47501 -23.74487 -23.50890 -21.44564 -20.66647 -19.58206 -18.73848 -17.32334 -16.77833 -16.27300 -15.20869 -14.93345 -14.72138 -14.21457 -14.10577 -13.84536 -13.27744 -13.18425 -12.94229 -12.61555 -12.21615 -12.05873 -11.85497 -11.79819 -11.68873 -11.33972 -11.14198 -11.12203 -11.00470 -10.83995 -10.69109 -10.05381 -9.95306 -9.69547 -9.45816 -9.36370 -8.98249 -8.75901 -7.52757 -6.83645 -6.60096 -4.32590 2.53684 2.97195 3.09711 3.11025 3.14748 3.26789 3.69933 3.87776 3.99416 4.60545 4.71480 4.74918 4.87301 5.00820 5.28547 5.36864 5.49052 5.57838 5.62700 5.67887 5.69109 5.74907 5.90141 5.96530 6.10177 6.21193 6.23862 6.40331 6.46576 6.66668 6.80205 6.95756 7.09005 7.23797 7.32097 7.65727 7.78261 7.90676 8.08399 8.30444 8.34402 8.64687 8.81976 8.94505 9.03079 10.30958 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.037005 B = 0.003563 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.474984 B = 7856.995872 C = 8153.196650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.089 4.089 4 C -0.122 4.122 5 C -0.150 4.150 6 C -0.185 4.185 7 H 0.118 0.882 8 C 0.527 3.473 9 O -0.526 6.526 10 N -0.650 5.650 11 C 0.006 3.994 12 C -0.122 4.122 13 C -0.141 4.141 14 C 0.099 3.901 15 C -0.462 4.462 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.813 5.813 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.205 4.205 24 C -0.086 4.086 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.395 0.605 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.277 0.723 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 10.910 -3.077 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.090 4.090 4 C -0.179 4.179 5 C -0.188 4.188 6 C -0.206 4.206 7 H 0.136 0.864 8 C 0.314 3.686 9 O -0.403 6.403 10 N -0.292 5.292 11 C -0.087 4.087 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.097 3.903 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.145 4.145 18 N -0.440 5.440 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.226 4.226 24 C -0.106 4.106 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.228 0.772 36 H 0.109 0.891 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.181 10.154 -2.820 15.364 hybrid contribution 0.829 -0.116 0.311 0.893 sum -10.351 10.037 -2.509 14.635 Atomic orbital electron populations 1.21938 0.96790 1.01261 1.01148 1.21093 0.93756 0.92387 1.04202 1.21551 0.90582 0.97611 0.99239 1.21509 0.99877 0.96931 0.99607 1.23185 1.02164 1.02153 0.91254 1.22388 0.94085 0.99214 1.04943 0.86413 1.19612 0.82345 0.89518 0.77110 1.90674 1.73456 1.27016 1.49118 1.42982 1.05299 1.09010 1.71908 1.17289 0.94820 0.87865 1.08689 1.20323 0.95343 0.98482 1.00076 1.21189 1.00654 0.90949 1.03311 1.17717 0.90337 0.92446 0.89805 1.19496 1.22331 1.06900 1.00550 0.90645 1.25874 0.95134 0.98142 0.95378 1.69762 1.34548 1.33951 1.05730 0.86201 0.79933 0.81749 0.78106 1.19547 1.20315 1.18732 1.20808 0.96048 0.97115 1.08584 1.20392 0.98867 0.92491 0.98816 0.92728 0.93143 0.92928 0.90879 0.90562 0.92592 0.90981 0.92116 0.88223 0.88364 0.77176 0.89145 0.85062 0.91178 0.88651 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.92 37.16 0.33 -1.31 16 2 C -0.08 -1.05 4.36 -26.73 -0.12 -1.16 16 3 C -0.09 -1.05 2.47 -154.51 -0.38 -1.43 16 4 C -0.12 -1.12 9.49 37.16 0.35 -0.77 16 5 C -0.15 -1.64 9.53 -26.73 -0.25 -1.89 16 6 C -0.18 -2.37 5.91 -91.77 -0.54 -2.91 16 7 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 8 C 0.53 9.24 7.43 -10.98 -0.08 9.16 16 9 O -0.53 -11.00 10.53 5.56 0.06 -10.94 16 10 N -0.65 -11.63 5.30 -9.74 -0.05 -11.69 16 11 C 0.01 0.13 6.31 -83.57 -0.53 -0.40 16 12 C -0.12 -2.82 9.90 -39.79 -0.39 -3.22 16 13 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 14 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.47 9.02 -37.85 -0.34 -12.81 16 16 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 17 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 18 N -0.81 -21.36 10.60 55.55 0.59 -20.77 16 19 Si 0.92 19.18 29.56 -169.99 -5.03 14.16 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 C -0.21 -5.28 9.74 -39.26 -0.38 -5.66 16 24 C -0.09 -2.08 8.61 -39.79 -0.34 -2.42 16 25 H 0.05 0.52 6.45 -51.93 -0.33 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.12 7.02 -51.93 -0.36 0.76 16 29 H 0.08 1.23 7.25 -51.93 -0.38 0.85 16 30 H 0.06 0.43 7.90 -51.92 -0.41 0.02 16 31 H 0.07 0.60 5.58 -51.93 -0.29 0.31 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 35 H 0.39 5.63 8.82 -40.82 -0.36 5.27 16 36 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.13 3.52 6.13 -52.48 -0.32 3.20 16 38 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 39 H 0.10 2.33 8.06 -52.48 -0.42 1.90 16 40 H 0.11 2.54 6.22 -52.49 -0.33 2.22 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -29.63 324.88 -8.94 -38.57 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.70 Total: 10.80 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.70 Total: -25.04 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.54 Total: -32.45 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.06 Total: -10.94 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.63 -8.94 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.299 kcal (2) G-P(sol) polarization free energy of solvation -29.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds