Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46674 * 2 1 4 4 C 1.52996 * 115.55312 * 34.33558 * 3 2 1 5 5 C 1.53005 * 117.49850 * 248.62031 * 3 2 1 6 6 C 1.53001 * 60.00005 * 252.51318 * 5 3 2 7 7 H 1.08994 * 117.49996 * 252.50481 * 6 5 3 8 8 C 1.50701 * 117.51479 * 107.48143 * 6 5 3 9 9 O 1.21279 * 119.99909 * 291.28540 * 8 6 5 10 10 N 1.34778 * 119.99938 * 111.28278 * 8 6 5 11 11 C 1.39241 * 120.00004 * 175.70909 * 10 8 6 12 12 C 1.39475 * 119.83517 * 215.01733 * 11 10 8 13 13 C 1.36370 * 120.17120 * 179.71609 * 12 11 10 14 14 C 1.40875 * 119.82680 * 0.57541 * 13 12 11 15 15 C 1.41152 * 120.16288 * 179.67547 * 14 13 12 16 16 H 1.08000 * 119.99866 * 214.79991 * 15 14 13 17 17 C 1.39908 * 119.99840 * 34.80567 * 15 14 13 18 18 N 1.30869 * 120.00322 * 355.55309 * 17 15 14 19 19 Si 1.86803 * 119.99486 * 175.55887 * 17 15 14 20 20 H 1.48503 * 109.47401 * 89.99948 * 19 17 15 21 21 H 1.48503 * 109.46666 * 209.99752 * 19 17 15 22 22 H 1.48496 * 109.47244 * 329.99462 * 19 17 15 23 23 C 1.40867 * 119.66982 * 359.69748 * 14 13 12 24 24 C 1.36372 * 119.83170 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46710 * 299.99430 * 1 2 3 26 26 H 1.08996 * 109.47374 * 59.99770 * 1 2 3 27 27 H 1.09005 * 109.46978 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46826 * 240.00062 * 2 1 3 29 29 H 1.08996 * 109.47374 * 120.00230 * 2 1 3 30 30 H 1.09007 * 109.47050 * 205.66736 * 4 3 2 31 31 H 1.09000 * 109.47314 * 325.66412 * 4 3 2 32 32 H 1.08999 * 109.47744 * 85.66787 * 4 3 2 33 33 H 1.09000 * 117.49706 * 145.02180 * 5 3 2 34 34 H 1.08997 * 117.49663 * 0.02562 * 5 3 2 35 35 H 0.96996 * 120.00119 * 355.70733 * 10 8 6 36 36 H 1.08009 * 119.91448 * 359.97438 * 12 11 10 37 37 H 1.08004 * 120.08797 * 180.24751 * 13 12 11 38 38 H 0.96999 * 119.99898 * 180.02562 * 18 17 15 39 39 H 1.08005 * 120.08648 * 179.97438 * 23 14 13 40 40 H 1.07999 * 119.91948 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4446 0.7785 5 6 2.7418 1.9437 -1.2638 6 6 3.5549 1.6562 0.0000 7 1 3.9427 2.5109 0.5542 8 6 4.4306 0.4298 0.0004 9 8 3.9282 -0.6741 0.0024 10 7 5.7722 0.5596 -0.0013 11 6 6.5811 -0.5701 0.0893 12 6 7.7865 -0.5062 0.7880 13 6 8.5813 -1.6100 0.8860 14 6 8.1878 -2.8138 0.2690 15 6 9.0083 -3.9587 0.3601 16 1 9.0680 -4.6477 -0.4695 17 6 9.7441 -4.2010 1.5251 18 7 9.7403 -3.3234 2.4959 19 14 10.7320 -5.7773 1.6947 20 1 12.1043 -5.5604 1.1704 21 1 10.8047 -6.1642 3.1267 22 1 10.0724 -6.8605 0.9222 23 6 6.9716 -2.8690 -0.4398 24 6 6.1847 -1.7584 -0.5243 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.3351 3.4442 0.3705 31 1 0.1339 2.1704 0.6913 32 1 1.4777 2.4332 1.8285 33 1 2.5945 2.9875 -1.5409 34 1 2.8399 1.2458 -2.0953 35 1 6.1741 1.4400 -0.0658 36 1 8.0893 0.4189 1.2561 37 1 9.5126 -1.5600 1.4307 38 1 10.2508 -3.4914 3.3035 39 1 6.6636 -3.7882 -0.9157 40 1 5.2522 -1.7991 -1.0677 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160124407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = -15.130826 kcal Electronic energy + Delta-G solvation = -20392.356224 eV Core-core repulsion = 17364.537812 eV Total energy + Delta-G solvation = -3027.818412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53903 -39.68350 -38.19046 -36.08551 -34.72016 -33.11417 -31.49886 -30.83161 -29.11828 -27.18462 -24.95394 -24.66490 -23.26011 -22.41752 -21.02280 -19.83777 -19.27200 -18.10272 -17.90624 -17.03305 -16.26129 -15.87485 -15.67180 -15.43015 -15.09972 -14.84718 -14.61571 -14.16285 -14.03600 -13.96013 -13.59390 -13.28146 -13.05039 -12.87901 -12.81597 -12.73604 -12.54304 -12.46149 -12.04540 -11.85410 -11.70143 -11.40869 -11.19396 -11.00927 -10.73189 -10.68962 -10.28331 -9.48506 -8.73680 -8.51543 -6.34639 0.77597 1.11496 1.38601 1.43059 1.52608 1.71427 2.22963 2.33153 2.77484 2.85038 3.61937 3.66869 3.78862 3.88177 4.12286 4.20677 4.37305 4.47363 4.51687 4.61481 4.72809 4.82477 4.90054 4.92624 4.98402 5.08295 5.13233 5.14018 5.16439 5.26060 5.30879 5.34169 5.42077 5.45610 5.64425 5.68031 5.90127 6.01914 6.13100 6.37512 6.65893 6.76009 6.95193 6.98713 7.43864 8.41176 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.037005 B = 0.003563 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.474984 B = 7856.995872 C = 8153.196650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.093 4.093 4 C -0.118 4.118 5 C -0.130 4.130 6 C -0.192 4.192 7 H 0.149 0.851 8 C 0.521 3.479 9 O -0.565 6.565 10 N -0.645 5.645 11 C 0.022 3.978 12 C -0.121 4.121 13 C -0.158 4.158 14 C 0.068 3.932 15 C -0.500 4.500 16 H 0.072 0.928 17 C 0.028 3.972 18 N -0.842 5.842 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.222 4.222 24 C -0.097 4.097 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.285 0.715 39 H 0.094 0.906 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 13.254 -2.900 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.094 4.094 4 C -0.174 4.174 5 C -0.168 4.168 6 C -0.213 4.213 7 H 0.167 0.833 8 C 0.311 3.689 9 O -0.444 6.444 10 N -0.289 5.289 11 C -0.072 4.072 12 C -0.141 4.141 13 C -0.178 4.178 14 C 0.065 3.935 15 C -0.531 4.531 16 H 0.090 0.910 17 C -0.184 4.184 18 N -0.470 5.470 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.187 1.187 23 C -0.242 4.242 24 C -0.117 4.117 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.101 0.899 35 H 0.253 0.747 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.151 12.552 -2.655 17.670 hybrid contribution 1.000 -0.762 0.215 1.276 sum -11.151 11.790 -2.440 16.410 Atomic orbital electron populations 1.21886 0.94385 1.01531 1.02641 1.20976 0.95891 0.93485 1.01130 1.21689 0.90122 0.97078 1.00514 1.21526 0.99681 0.97106 0.99113 1.23299 0.99745 1.03798 0.89921 1.22396 0.93789 0.97686 1.07411 0.83318 1.20554 0.82277 0.90747 0.75366 1.90675 1.74073 1.29237 1.50425 1.42952 1.05381 1.08625 1.71960 1.17359 0.94736 0.88721 1.06355 1.20575 0.95007 0.98954 0.99544 1.21179 1.00971 0.91710 1.03986 1.18023 0.91130 0.93314 0.91013 1.19729 1.24194 1.07527 1.01604 0.90975 1.26746 0.95709 1.01529 0.94422 1.69824 1.35199 1.35680 1.06254 0.85095 0.78470 0.77090 0.78348 1.18318 1.19350 1.18719 1.20931 0.96293 0.97847 1.09096 1.20499 0.98677 0.93119 0.99427 0.91132 0.91589 0.93423 0.93713 0.94028 0.90266 0.90046 0.92267 0.84507 0.89863 0.74685 0.85809 0.86290 0.90458 0.88742 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.92 71.98 0.64 -2.28 16 2 C -0.08 -2.09 4.36 30.59 0.13 -1.95 16 3 C -0.09 -1.97 2.47 -52.18 -0.13 -2.10 16 4 C -0.12 -1.70 9.49 71.98 0.68 -1.01 16 5 C -0.13 -2.42 9.53 30.60 0.29 -2.13 16 6 C -0.19 -4.39 5.91 -11.54 -0.07 -4.45 16 7 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 8 C 0.52 17.83 7.43 87.66 0.65 18.48 16 9 O -0.56 -24.17 10.53 -3.03 -0.03 -24.20 16 10 N -0.64 -22.17 5.30 -303.11 -1.61 -23.78 16 11 C 0.02 0.98 6.31 38.56 0.24 1.23 16 12 C -0.12 -5.56 9.90 22.13 0.22 -5.34 16 13 C -0.16 -8.46 8.61 22.48 0.19 -8.26 16 14 C 0.07 3.82 5.55 -21.28 -0.12 3.70 16 15 C -0.50 -28.09 9.02 23.39 0.21 -27.88 16 16 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 17 C 0.03 1.45 5.42 85.24 0.46 1.91 16 18 N -0.84 -45.16 10.60 21.82 0.23 -44.93 16 19 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 23 C -0.22 -11.91 9.74 22.48 0.22 -11.69 16 24 C -0.10 -4.84 8.61 22.14 0.19 -4.65 16 25 H 0.07 1.17 6.45 -2.38 -0.02 1.16 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.04 1.42 7.02 -2.39 -0.02 1.41 16 29 H 0.04 1.39 7.25 -2.39 -0.02 1.37 16 30 H 0.08 0.81 7.90 -2.38 -0.02 0.79 16 31 H 0.08 1.03 5.58 -2.39 -0.01 1.02 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.14 1.59 8.05 -2.39 -0.02 1.57 16 34 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 35 H 0.42 10.75 8.82 -92.71 -0.82 9.93 16 36 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 38 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16 39 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 40 H 0.11 5.26 6.22 -2.91 -0.02 5.24 16 Total: -1.00 -67.86 324.88 4.67 -63.18 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.23 Total: 34.36 kcal Atomic # 6 Polarization: -50.25 SS G_CDS: 3.82 Total: -46.43 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.38 Total: -68.71 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.03 Total: -24.20 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -67.86 4.67 -63.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.053 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds