Wall clock time and date at job start Mon Mar 30 2020 01:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46873 * 2 1 4 4 C 1.53007 * 115.56117 * 325.67959 * 3 2 1 5 5 C 1.53079 * 117.49796 * 111.39969 * 3 2 1 6 6 C 1.53002 * 59.98549 * 107.48098 * 5 3 2 7 7 H 1.08997 * 117.49783 * 252.49974 * 6 5 3 8 8 C 1.50696 * 117.49684 * 107.50093 * 6 5 3 9 9 O 1.21286 * 120.00365 * 291.24868 * 8 6 5 10 10 N 1.34774 * 120.00064 * 111.25414 * 8 6 5 11 11 C 1.39235 * 120.00283 * 184.02972 * 10 8 6 12 12 C 1.39483 * 119.83433 * 324.50321 * 11 10 8 13 13 C 1.36377 * 120.16984 * 179.71977 * 12 11 10 14 14 C 1.40867 * 119.82291 * 0.54920 * 13 12 11 15 15 C 1.41154 * 120.15848 * 179.74632 * 14 13 12 16 16 H 1.08008 * 120.00063 * 214.76095 * 15 14 13 17 17 C 1.39907 * 120.00390 * 34.76502 * 15 14 13 18 18 N 1.30872 * 119.99415 * 355.55946 * 17 15 14 19 19 Si 1.86797 * 120.00198 * 175.55836 * 17 15 14 20 20 H 1.48510 * 109.47064 * 90.00008 * 19 17 15 21 21 H 1.48492 * 109.47278 * 209.99736 * 19 17 15 22 22 H 1.48496 * 109.47229 * 330.00146 * 19 17 15 23 23 C 1.40870 * 119.67965 * 359.72340 * 14 13 12 24 24 C 1.36379 * 119.82568 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47549 * 300.00293 * 1 2 3 26 26 H 1.09005 * 109.47025 * 60.00665 * 1 2 3 27 27 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47118 * 239.99416 * 2 1 3 29 29 H 1.09006 * 109.46528 * 119.99505 * 2 1 3 30 30 H 1.08993 * 109.47181 * 274.31718 * 4 3 2 31 31 H 1.09001 * 109.46623 * 34.31946 * 4 3 2 32 32 H 1.09005 * 109.46773 * 154.31418 * 4 3 2 33 33 H 1.08997 * 117.49277 * 359.97438 * 5 3 2 34 34 H 1.09003 * 117.52754 * 214.95163 * 5 3 2 35 35 H 0.97000 * 119.99874 * 4.30824 * 10 8 6 36 36 H 1.07996 * 119.91005 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.08798 * 180.27788 * 13 12 11 38 38 H 0.97003 * 119.99474 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.08995 * 180.02562 * 23 14 13 40 40 H 1.07991 * 119.91461 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4449 -0.7782 5 6 2.7426 1.9437 1.2642 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7691 -0.0003 8 6 4.0910 2.8378 -0.7664 9 8 3.3289 3.5757 -1.3542 10 7 5.4174 3.0746 -0.7987 11 6 5.9063 4.2121 -1.4356 12 6 5.2795 4.6854 -2.5883 13 6 5.7491 5.8022 -3.2145 14 6 6.8772 6.4713 -2.7008 15 6 7.3725 7.6248 -3.3463 16 1 8.4349 7.8186 -3.3658 17 6 6.4873 8.5172 -3.9607 18 7 5.2095 8.2394 -4.0130 19 14 7.1293 10.1049 -4.7065 20 1 7.4914 9.8733 -6.1280 21 1 6.0771 11.1498 -4.6277 22 1 8.3299 10.5539 -3.9568 23 6 7.5084 5.9841 -1.5395 24 6 7.0241 4.8690 -0.9213 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4776 2.4337 -1.8281 31 1 0.1338 2.1706 -0.6910 32 1 1.3351 3.4443 -0.3698 33 1 2.8409 1.2457 2.0956 34 1 2.5962 2.9876 1.5418 35 1 6.0318 2.4505 -0.3816 36 1 4.4176 4.1684 -2.9835 37 1 5.2600 6.1701 -4.1043 38 1 4.5958 8.8579 -4.4394 39 1 8.3735 6.4921 -1.1397 40 1 7.5066 4.4945 -0.0308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160124521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:32 Heat of formation + Delta-G solvation = 1.312461 kcal Electronic energy + Delta-G solvation = -20390.350997 eV Core-core repulsion = 17363.245620 eV Total energy + Delta-G solvation = -3027.105378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14282 -38.15711 -36.70301 -34.35347 -32.88491 -32.24519 -29.49923 -29.02813 -27.92068 -25.52955 -24.00916 -23.47378 -21.34552 -20.75629 -19.47950 -18.73112 -17.26519 -16.79056 -16.31839 -15.15800 -15.12233 -14.69321 -14.38201 -14.08493 -13.84583 -13.16100 -12.90988 -12.66766 -12.56839 -12.31147 -12.23298 -11.97094 -11.74126 -11.70196 -11.37030 -11.19390 -11.13121 -10.91915 -10.84890 -10.47552 -10.06032 -9.86803 -9.84702 -9.72673 -9.28770 -8.88943 -8.64361 -7.49420 -6.85361 -6.56891 -4.30622 2.56787 2.98436 3.10484 3.12100 3.15352 3.29659 3.62653 3.94159 4.01236 4.66198 4.66930 4.74582 4.86862 4.99319 5.19258 5.29413 5.35242 5.54983 5.66484 5.70918 5.78562 5.84658 5.96044 5.99618 6.11936 6.16475 6.20226 6.29534 6.41403 6.69545 6.87029 7.04093 7.07467 7.23446 7.33193 7.66525 7.72039 8.02059 8.11828 8.25098 8.37689 8.69911 8.84853 8.96022 9.05324 10.33984 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034654 B = 0.003677 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.794243 B = 7612.198182 C = 8199.140749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.090 4.090 4 C -0.109 4.109 5 C -0.149 4.149 6 C -0.184 4.184 7 H 0.117 0.883 8 C 0.527 3.473 9 O -0.521 6.521 10 N -0.652 5.652 11 C 0.007 3.993 12 C -0.094 4.094 13 C -0.144 4.144 14 C 0.099 3.901 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.808 5.808 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.264 1.264 23 C -0.204 4.204 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.394 0.606 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.278 0.722 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 -13.037 7.360 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.187 4.187 6 C -0.206 4.206 7 H 0.135 0.865 8 C 0.313 3.687 9 O -0.397 6.397 10 N -0.294 5.294 11 C -0.085 4.085 12 C -0.114 4.114 13 C -0.164 4.164 14 C 0.097 3.903 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.146 4.146 18 N -0.435 5.435 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.224 4.224 24 C -0.135 4.135 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.227 0.773 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.944 -12.395 6.863 15.365 hybrid contribution 0.752 0.445 0.067 0.876 sum -5.193 -11.950 6.930 14.758 Atomic orbital electron populations 1.21828 0.95370 1.01237 1.02396 1.21083 0.96207 0.93248 1.01852 1.21584 0.91107 0.96775 0.99637 1.21464 0.96993 0.97409 1.00665 1.23193 1.02125 1.02767 0.90574 1.22350 0.95877 0.99354 1.02997 0.86525 1.19608 0.82346 0.85412 0.81297 1.90710 1.56610 1.48313 1.44100 1.42972 1.06545 1.24128 1.55768 1.17300 1.00738 0.92836 0.97644 1.20643 0.99051 0.97943 0.93760 1.21307 0.99559 0.94041 1.01467 1.17723 0.91490 0.91281 0.89840 1.19473 0.94602 1.04928 1.30435 0.90691 1.25889 0.94611 1.00099 0.94043 1.69792 1.03140 1.35825 1.34740 0.86209 0.79370 0.80751 0.79690 1.19544 1.20317 1.18791 1.20689 1.03923 0.99389 0.98414 1.20077 0.97566 0.96890 0.98945 0.92563 0.91870 0.92965 0.91538 0.91885 0.91347 0.92852 0.91623 0.88246 0.88311 0.77309 0.87512 0.85191 0.91117 0.88575 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.92 37.16 0.33 -0.95 16 2 C -0.09 -0.81 6.12 -26.73 -0.16 -0.98 16 3 C -0.09 -1.09 2.47 -154.46 -0.38 -1.47 16 4 C -0.11 -1.53 7.73 37.16 0.29 -1.24 16 5 C -0.15 -1.72 9.53 -26.69 -0.25 -1.97 16 6 C -0.18 -2.39 5.91 -91.77 -0.54 -2.94 16 7 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 8 C 0.53 9.41 7.42 -10.99 -0.08 9.33 16 9 O -0.52 -11.29 10.55 5.55 0.06 -11.24 16 10 N -0.65 -11.70 5.30 -9.74 -0.05 -11.75 16 11 C 0.01 0.16 6.30 -83.57 -0.53 -0.37 16 12 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 13 C -0.14 -3.91 8.61 -39.26 -0.34 -4.25 16 14 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 15 C -0.46 -12.52 9.02 -37.85 -0.34 -12.86 16 16 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 17 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 18 N -0.81 -21.80 10.59 55.55 0.59 -21.21 16 19 Si 0.91 19.33 29.56 -169.99 -5.03 14.30 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.20 -5.01 9.74 -39.26 -0.38 -5.39 16 24 C -0.11 -2.55 9.90 -39.79 -0.39 -2.94 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 6.45 -51.93 -0.33 0.23 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.07 1.10 7.25 -51.93 -0.38 0.72 16 31 H 0.05 0.62 5.58 -51.93 -0.29 0.33 16 32 H 0.06 1.07 7.02 -51.93 -0.36 0.70 16 33 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 35 H 0.39 5.55 8.82 -40.82 -0.36 5.19 16 36 H 0.11 2.70 6.25 -52.49 -0.33 2.38 16 37 H 0.13 3.70 6.13 -52.49 -0.32 3.38 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -30.10 324.92 -9.05 -39.15 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.70 Total: 10.80 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -3.82 Total: -24.95 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.54 Total: -32.97 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.06 Total: -11.24 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.10 -9.05 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.464 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds