Wall clock time and date at job start Mon Mar 30 2020 01:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46873 * 2 1 4 4 C 1.53007 * 115.56117 * 325.67959 * 3 2 1 5 5 C 1.53079 * 117.49796 * 111.39969 * 3 2 1 6 6 C 1.53002 * 59.98549 * 107.48098 * 5 3 2 7 7 H 1.08997 * 117.49783 * 252.49974 * 6 5 3 8 8 C 1.50696 * 117.49684 * 107.50093 * 6 5 3 9 9 O 1.21286 * 120.00365 * 291.24868 * 8 6 5 10 10 N 1.34774 * 120.00064 * 111.25414 * 8 6 5 11 11 C 1.39235 * 120.00283 * 184.02972 * 10 8 6 12 12 C 1.39483 * 119.83433 * 324.50321 * 11 10 8 13 13 C 1.36377 * 120.16984 * 179.71977 * 12 11 10 14 14 C 1.40867 * 119.82291 * 0.54920 * 13 12 11 15 15 C 1.41154 * 120.15848 * 179.74632 * 14 13 12 16 16 H 1.08008 * 120.00063 * 214.76095 * 15 14 13 17 17 C 1.39907 * 120.00390 * 34.76502 * 15 14 13 18 18 N 1.30872 * 119.99415 * 355.55946 * 17 15 14 19 19 Si 1.86797 * 120.00198 * 175.55836 * 17 15 14 20 20 H 1.48510 * 109.47064 * 90.00008 * 19 17 15 21 21 H 1.48492 * 109.47278 * 209.99736 * 19 17 15 22 22 H 1.48496 * 109.47229 * 330.00146 * 19 17 15 23 23 C 1.40870 * 119.67965 * 359.72340 * 14 13 12 24 24 C 1.36379 * 119.82568 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47549 * 300.00293 * 1 2 3 26 26 H 1.09005 * 109.47025 * 60.00665 * 1 2 3 27 27 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47118 * 239.99416 * 2 1 3 29 29 H 1.09006 * 109.46528 * 119.99505 * 2 1 3 30 30 H 1.08993 * 109.47181 * 274.31718 * 4 3 2 31 31 H 1.09001 * 109.46623 * 34.31946 * 4 3 2 32 32 H 1.09005 * 109.46773 * 154.31418 * 4 3 2 33 33 H 1.08997 * 117.49277 * 359.97438 * 5 3 2 34 34 H 1.09003 * 117.52754 * 214.95163 * 5 3 2 35 35 H 0.97000 * 119.99874 * 4.30824 * 10 8 6 36 36 H 1.07996 * 119.91005 * 359.97438 * 12 11 10 37 37 H 1.07995 * 120.08798 * 180.27788 * 13 12 11 38 38 H 0.97003 * 119.99474 * 180.02562 * 18 17 15 39 39 H 1.07995 * 120.08995 * 180.02562 * 23 14 13 40 40 H 1.07991 * 119.91461 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1852 2.4449 -0.7782 5 6 2.7426 1.9437 1.2642 6 6 3.5550 1.6562 0.0000 7 1 4.1884 0.7691 -0.0003 8 6 4.0910 2.8378 -0.7664 9 8 3.3289 3.5757 -1.3542 10 7 5.4174 3.0746 -0.7987 11 6 5.9063 4.2121 -1.4356 12 6 5.2795 4.6854 -2.5883 13 6 5.7491 5.8022 -3.2145 14 6 6.8772 6.4713 -2.7008 15 6 7.3725 7.6248 -3.3463 16 1 8.4349 7.8186 -3.3658 17 6 6.4873 8.5172 -3.9607 18 7 5.2095 8.2394 -4.0130 19 14 7.1293 10.1049 -4.7065 20 1 7.4914 9.8733 -6.1280 21 1 6.0771 11.1498 -4.6277 22 1 8.3299 10.5539 -3.9568 23 6 7.5084 5.9841 -1.5395 24 6 7.0241 4.8690 -0.9213 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.4776 2.4337 -1.8281 31 1 0.1338 2.1706 -0.6910 32 1 1.3351 3.4443 -0.3698 33 1 2.8409 1.2457 2.0956 34 1 2.5962 2.9876 1.5418 35 1 6.0318 2.4505 -0.3816 36 1 4.4176 4.1684 -2.9835 37 1 5.2600 6.1701 -4.1043 38 1 4.5958 8.8579 -4.4394 39 1 8.3735 6.4921 -1.1397 40 1 7.5066 4.4945 -0.0308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160124521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:31 Heat of formation + Delta-G solvation = -15.262847 kcal Electronic energy + Delta-G solvation = -20391.069756 eV Core-core repulsion = 17363.245620 eV Total energy + Delta-G solvation = -3027.824137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52529 -39.67349 -38.21502 -36.11013 -34.68659 -33.09192 -31.45053 -30.86721 -29.05308 -27.24203 -25.12466 -24.58306 -23.20656 -22.47730 -20.95972 -19.78644 -19.23542 -18.18568 -17.87472 -16.98938 -16.29746 -15.82567 -15.76049 -15.52496 -15.25069 -14.78806 -14.51070 -14.13240 -13.95135 -13.67035 -13.54819 -13.34112 -13.26981 -13.00690 -12.86265 -12.69647 -12.59263 -12.30610 -12.00873 -11.75871 -11.68805 -11.64455 -11.16370 -11.03193 -10.78020 -10.55038 -10.27572 -9.46013 -8.74560 -8.50260 -6.33597 0.79904 1.11541 1.37767 1.42771 1.52770 1.72817 2.22597 2.31131 2.75850 2.88458 3.64489 3.69290 3.72514 3.88331 4.11529 4.18495 4.42398 4.47301 4.47785 4.57191 4.77093 4.85520 4.91879 4.96794 4.99123 5.04015 5.12311 5.13979 5.18027 5.22244 5.34136 5.34323 5.41937 5.45712 5.61071 5.70164 5.87447 6.08315 6.14730 6.34914 6.69861 6.76400 6.95316 7.01662 7.46395 8.42597 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034654 B = 0.003677 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.794243 B = 7612.198182 C = 8199.140749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 C -0.095 4.095 4 C -0.105 4.105 5 C -0.132 4.132 6 C -0.187 4.187 7 H 0.154 0.846 8 C 0.519 3.481 9 O -0.566 6.566 10 N -0.644 5.644 11 C 0.022 3.978 12 C -0.109 4.109 13 C -0.168 4.168 14 C 0.065 3.935 15 C -0.497 4.497 16 H 0.080 0.920 17 C 0.021 3.979 18 N -0.848 5.848 19 Si 0.991 3.009 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.210 4.210 24 C -0.109 4.109 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.282 0.718 39 H 0.113 0.887 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 -14.991 9.654 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.095 4.095 4 C -0.162 4.162 5 C -0.170 4.170 6 C -0.208 4.208 7 H 0.172 0.828 8 C 0.308 3.692 9 O -0.445 6.445 10 N -0.289 5.289 11 C -0.072 4.072 12 C -0.129 4.129 13 C -0.188 4.188 14 C 0.062 3.938 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.476 5.476 19 Si 0.812 3.188 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.230 4.230 24 C -0.129 4.129 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.190 -14.402 9.187 17.854 hybrid contribution 0.437 0.926 -0.576 1.175 sum -4.753 -13.476 8.611 16.684 Atomic orbital electron populations 1.21832 0.94943 1.02235 1.01934 1.21106 0.96548 0.91013 1.03108 1.21702 0.90082 0.97977 0.99761 1.21358 0.99003 0.96754 0.99049 1.23299 1.00075 1.02656 0.90939 1.22370 0.96796 0.98164 1.03437 0.82838 1.20592 0.81778 0.86187 0.80617 1.90715 1.57655 1.50257 1.45908 1.42919 1.07365 1.23244 1.55353 1.17383 0.99924 0.93647 0.96240 1.20651 0.99215 0.97836 0.95219 1.21170 1.00649 0.95413 1.01589 1.18059 0.92179 0.92083 0.91435 1.19766 0.95102 1.05781 1.32120 0.90221 1.26864 0.94553 1.03552 0.94005 1.69918 1.04526 1.37260 1.35860 0.85062 0.78862 0.75927 0.78940 1.18653 1.19759 1.17881 1.20968 1.04183 1.00167 0.97663 1.20442 0.96943 0.95726 0.99762 0.92324 0.93071 0.91264 0.91441 0.89392 0.94272 0.90733 0.94709 0.84338 0.90311 0.74535 0.88672 0.87804 0.90796 0.86923 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.92 71.98 0.64 -1.53 16 2 C -0.08 -1.23 6.12 30.59 0.19 -1.04 16 3 C -0.09 -2.08 2.47 -52.15 -0.13 -2.21 16 4 C -0.10 -3.01 7.73 71.98 0.56 -2.45 16 5 C -0.13 -2.62 9.53 30.62 0.29 -2.33 16 6 C -0.19 -4.32 5.91 -11.54 -0.07 -4.39 16 7 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 8 C 0.52 18.17 7.42 87.66 0.65 18.82 16 9 O -0.57 -25.47 10.55 -3.05 -0.03 -25.50 16 10 N -0.64 -22.01 5.30 -303.11 -1.61 -23.61 16 11 C 0.02 0.96 6.30 38.57 0.24 1.21 16 12 C -0.11 -5.74 8.61 22.14 0.19 -5.55 16 13 C -0.17 -9.68 8.61 22.48 0.19 -9.49 16 14 C 0.06 3.64 5.55 -21.28 -0.12 3.53 16 15 C -0.50 -27.74 9.02 23.39 0.21 -27.53 16 16 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 17 C 0.02 1.14 5.42 85.24 0.46 1.60 16 18 N -0.85 -48.11 10.59 21.82 0.23 -47.87 16 19 Si 0.99 40.42 29.56 68.60 2.03 42.45 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 C -0.21 -10.25 9.74 22.48 0.22 -10.03 16 24 C -0.11 -4.64 9.90 22.14 0.22 -4.42 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.84 6.45 -2.38 -0.02 0.83 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 0.95 7.90 -2.38 -0.02 0.93 16 30 H 0.04 1.33 7.25 -2.39 -0.02 1.31 16 31 H 0.07 1.75 5.58 -2.39 -0.01 1.74 16 32 H 0.03 1.18 7.02 -2.38 -0.02 1.16 16 33 H 0.14 1.72 8.05 -2.39 -0.02 1.70 16 34 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 35 H 0.42 10.32 8.82 -92.71 -0.82 9.50 16 36 H 0.10 5.14 6.25 -2.91 -0.02 5.12 16 37 H 0.10 6.41 6.13 -2.91 -0.02 6.40 16 38 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 39 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.14 4.52 8.06 -2.92 -0.02 4.50 16 Total: -1.00 -70.63 324.92 4.60 -66.02 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.23 Total: 34.32 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 3.75 Total: -45.81 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.38 Total: -71.49 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.03 Total: -25.50 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -70.63 4.60 -66.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.762 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds