Wall clock time and date at job start Mon Mar 30 2020 01:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47124 * 2 1 4 4 C 1.52998 * 115.55021 * 34.27888 * 3 2 1 5 5 C 1.53004 * 117.49930 * 248.61370 * 3 2 1 6 6 C 1.53005 * 60.00029 * 252.50701 * 5 3 2 7 7 H 1.09003 * 117.49866 * 107.48220 * 6 5 3 8 8 C 1.50692 * 117.50234 * 252.51080 * 6 5 3 9 9 O 1.21285 * 120.00115 * 68.60222 * 8 6 5 10 10 N 1.34774 * 120.00028 * 248.60919 * 8 6 5 11 11 C 1.39238 * 120.00258 * 176.69729 * 10 8 6 12 12 C 1.39483 * 119.83490 * 217.48417 * 11 10 8 13 13 C 1.36379 * 120.16622 * 179.71582 * 12 11 10 14 14 C 1.40870 * 119.82621 * 0.57861 * 13 12 11 15 15 C 1.41152 * 120.16098 * 179.67665 * 14 13 12 16 16 H 1.07998 * 120.00224 * 157.94902 * 15 14 13 17 17 C 1.39907 * 120.00148 * 337.95463 * 15 14 13 18 18 N 1.30874 * 119.99779 * 327.63676 * 17 15 14 19 19 Si 1.86796 * 120.00334 * 147.63630 * 17 15 14 20 20 H 1.48507 * 109.46960 * 94.98618 * 19 17 15 21 21 H 1.48493 * 109.47152 * 214.98367 * 19 17 15 22 22 H 1.48506 * 109.47117 * 334.98887 * 19 17 15 23 23 C 1.40862 * 119.67620 * 359.69280 * 14 13 12 24 24 C 1.36381 * 119.82624 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46736 * 299.99753 * 1 2 3 26 26 H 1.08999 * 109.47317 * 59.99946 * 1 2 3 27 27 H 1.08997 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46736 * 240.00247 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00054 * 2 1 3 30 30 H 1.08995 * 109.47316 * 325.71900 * 4 3 2 31 31 H 1.08996 * 109.47308 * 85.72828 * 4 3 2 32 32 H 1.09001 * 109.47089 * 205.72204 * 4 3 2 33 33 H 1.09003 * 117.49680 * 359.97438 * 5 3 2 34 34 H 1.08997 * 117.50307 * 145.02175 * 5 3 2 35 35 H 0.97006 * 120.00031 * 356.69530 * 10 8 6 36 36 H 1.07999 * 119.91276 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.08427 * 180.29973 * 13 12 11 38 38 H 0.96997 * 120.00145 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.08859 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91192 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1846 2.4448 0.7774 5 6 2.7421 1.9435 -1.2637 6 6 3.5551 1.6562 0.0002 7 1 4.1884 0.7690 0.0004 8 6 4.0910 2.8378 0.7666 9 8 3.3285 3.5770 1.3526 10 7 5.4175 3.0735 0.8007 11 6 5.9075 4.2031 1.4508 12 6 6.9959 4.8933 0.9173 13 6 7.4777 6.0039 1.5453 14 6 6.8808 6.4465 2.7421 15 6 7.3781 7.5912 3.4016 16 1 6.7459 8.1375 4.0858 17 6 8.6899 8.0181 3.1687 18 7 9.6267 7.1420 2.9088 19 14 9.1043 9.8385 3.2289 20 1 9.6074 10.1872 4.5820 21 1 10.1497 10.1418 2.2188 22 1 7.8853 10.6337 2.9339 23 6 5.7856 5.7410 3.2777 24 6 5.3112 4.6354 2.6353 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 0.1335 2.1701 0.6901 31 1 1.4769 2.4344 1.8274 32 1 1.3342 3.4441 0.3686 33 1 2.8410 1.2454 -2.0949 34 1 2.5950 2.9873 -1.5410 35 1 6.0310 2.4561 0.3725 36 1 7.4556 4.5497 0.0025 37 1 8.3174 6.5401 1.1285 38 1 10.5363 7.4379 2.7477 39 1 5.3232 6.0741 4.1951 40 1 4.4713 4.0936 3.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160124642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:35 Heat of formation + Delta-G solvation = -1.946659 kcal Electronic energy + Delta-G solvation = -20280.593721 eV Core-core repulsion = 17253.347018 eV Total energy + Delta-G solvation = -3027.246704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11924 -38.13691 -36.70655 -34.37637 -33.01960 -32.25835 -29.56978 -29.08265 -27.95113 -25.54987 -24.01573 -23.47760 -21.45933 -20.62241 -19.55978 -18.73086 -17.39863 -16.69687 -16.32390 -15.27726 -15.08967 -14.70109 -14.38370 -14.14280 -13.89304 -13.22591 -12.90417 -12.68608 -12.58339 -12.30092 -12.23302 -12.08854 -11.93453 -11.67444 -11.44509 -11.17788 -11.13875 -10.92729 -10.87920 -10.52489 -10.09820 -10.06605 -9.75117 -9.69551 -9.28517 -8.89505 -8.63992 -7.53298 -7.12809 -6.87016 -4.26036 2.56963 2.92953 3.05295 3.10086 3.12113 3.30156 3.65345 3.89750 3.95386 4.51208 4.66511 4.67267 4.86635 4.98711 5.18169 5.31044 5.35265 5.53830 5.66283 5.71074 5.77760 5.83518 5.94959 5.98943 6.10244 6.18153 6.20900 6.27166 6.44416 6.67421 6.81494 6.98859 7.01726 7.17065 7.31262 7.58369 7.73283 7.92443 8.03534 8.26950 8.35000 8.56463 8.84033 8.85254 9.03879 10.02991 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.050391 B = 0.003332 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.518414 B = 8402.377763 C = 8646.568990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.091 4.091 4 C -0.108 4.108 5 C -0.149 4.149 6 C -0.184 4.184 7 H 0.117 0.883 8 C 0.526 3.474 9 O -0.528 6.528 10 N -0.647 5.647 11 C -0.020 4.020 12 C -0.103 4.103 13 C -0.171 4.171 14 C 0.112 3.888 15 C -0.466 4.466 16 H 0.082 0.918 17 C 0.088 3.912 18 N -0.770 5.770 19 Si 0.896 3.104 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.224 4.224 24 C -0.066 4.066 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.283 0.717 39 H 0.094 0.906 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 -10.953 -7.225 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.165 4.165 5 C -0.186 4.186 6 C -0.206 4.206 7 H 0.135 0.865 8 C 0.313 3.687 9 O -0.406 6.406 10 N -0.290 5.290 11 C -0.112 4.112 12 C -0.123 4.123 13 C -0.191 4.191 14 C 0.110 3.890 15 C -0.494 4.494 16 H 0.100 0.900 17 C -0.134 4.134 18 N -0.393 5.393 19 Si 0.719 3.281 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.244 4.244 24 C -0.086 4.086 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.226 0.774 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.144 -10.469 -6.848 15.495 hybrid contribution 0.970 0.409 -0.282 1.089 sum -8.174 -10.060 -7.129 14.794 Atomic orbital electron populations 1.21828 0.95385 1.01240 1.02355 1.21087 0.96182 0.93280 1.01877 1.21561 0.91169 0.96750 0.99675 1.21453 0.96960 0.97397 1.00641 1.23179 1.02145 1.02728 0.90599 1.22355 0.95802 0.99438 1.02967 0.86539 1.19582 0.82391 0.85384 0.81314 1.90678 1.56619 1.48512 1.44751 1.42926 1.06396 1.24880 1.54755 1.17069 1.02683 0.94116 0.97306 1.20176 0.97161 0.96502 0.98452 1.20617 1.02941 0.98477 0.97069 1.17587 0.90180 0.90726 0.90543 1.19501 0.96821 1.09427 1.23631 0.90038 1.25940 0.95938 0.99584 0.91893 1.69948 1.02041 1.36313 1.30996 0.86514 0.79266 0.83412 0.78909 1.19461 1.19901 1.18095 1.20599 1.03394 0.98977 1.01434 1.20301 0.98163 0.97190 0.92911 0.91906 0.92565 0.92964 0.91873 0.91542 0.92891 0.91402 0.91665 0.88267 0.88334 0.77365 0.89338 0.87516 0.90625 0.88792 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.92 37.16 0.33 -0.92 16 2 C -0.09 -0.81 6.12 -26.73 -0.16 -0.97 16 3 C -0.09 -1.08 2.47 -154.51 -0.38 -1.46 16 4 C -0.11 -1.46 7.73 37.16 0.29 -1.18 16 5 C -0.15 -1.69 9.52 -26.73 -0.25 -1.95 16 6 C -0.18 -2.39 5.91 -91.77 -0.54 -2.93 16 7 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 8 C 0.53 9.33 7.40 -10.99 -0.08 9.25 16 9 O -0.53 -11.14 10.72 5.55 0.06 -11.08 16 10 N -0.65 -11.81 5.30 -9.74 -0.05 -11.86 16 11 C -0.02 -0.45 6.25 -83.57 -0.52 -0.97 16 12 C -0.10 -2.39 9.90 -39.79 -0.39 -2.79 16 13 C -0.17 -4.43 8.74 -39.26 -0.34 -4.78 16 14 C 0.11 3.04 5.57 -106.80 -0.60 2.45 16 15 C -0.47 -12.44 8.94 -37.85 -0.34 -12.78 16 16 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 17 C 0.09 2.19 4.77 -17.34 -0.08 2.11 16 18 N -0.77 -19.58 11.78 55.55 0.65 -18.92 16 19 Si 0.90 18.33 29.66 -169.99 -5.04 13.29 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.22 -5.80 9.74 -39.26 -0.38 -6.18 16 24 C -0.07 -1.61 8.59 -39.79 -0.34 -1.96 16 25 H 0.06 0.55 6.45 -51.93 -0.33 0.21 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.60 5.58 -51.93 -0.29 0.31 16 31 H 0.07 1.05 7.26 -51.93 -0.38 0.68 16 32 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 33 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.10 1.24 8.05 -51.93 -0.42 0.83 16 35 H 0.39 5.80 8.82 -40.82 -0.36 5.44 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.11 2.79 6.53 -52.49 -0.34 2.45 16 38 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 39 H 0.09 2.32 8.06 -52.48 -0.42 1.89 16 40 H 0.10 2.47 6.45 -52.49 -0.34 2.13 16 LS Contribution 326.45 15.07 4.92 4.92 Total: -1.00 -29.32 326.45 -9.01 -38.33 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.74 Total: 10.37 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.80 Total: -25.05 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.60 Total: -30.78 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.08 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.04 Total: 13.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.32 -9.01 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.380 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds