Wall clock time and date at job start Mon Mar 30 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47124 * 2 1 4 4 C 1.52998 * 115.55021 * 34.27888 * 3 2 1 5 5 C 1.53004 * 117.49930 * 248.61370 * 3 2 1 6 6 C 1.53005 * 60.00029 * 252.50701 * 5 3 2 7 7 H 1.09003 * 117.49866 * 107.48220 * 6 5 3 8 8 C 1.50692 * 117.50234 * 252.51080 * 6 5 3 9 9 O 1.21285 * 120.00115 * 68.60222 * 8 6 5 10 10 N 1.34774 * 120.00028 * 248.60919 * 8 6 5 11 11 C 1.39238 * 120.00258 * 176.69729 * 10 8 6 12 12 C 1.39483 * 119.83490 * 217.48417 * 11 10 8 13 13 C 1.36379 * 120.16622 * 179.71582 * 12 11 10 14 14 C 1.40870 * 119.82621 * 0.57861 * 13 12 11 15 15 C 1.41152 * 120.16098 * 179.67665 * 14 13 12 16 16 H 1.07998 * 120.00224 * 157.94902 * 15 14 13 17 17 C 1.39907 * 120.00148 * 337.95463 * 15 14 13 18 18 N 1.30874 * 119.99779 * 327.63676 * 17 15 14 19 19 Si 1.86796 * 120.00334 * 147.63630 * 17 15 14 20 20 H 1.48507 * 109.46960 * 94.98618 * 19 17 15 21 21 H 1.48493 * 109.47152 * 214.98367 * 19 17 15 22 22 H 1.48506 * 109.47117 * 334.98887 * 19 17 15 23 23 C 1.40862 * 119.67620 * 359.69280 * 14 13 12 24 24 C 1.36381 * 119.82624 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46736 * 299.99753 * 1 2 3 26 26 H 1.08999 * 109.47317 * 59.99946 * 1 2 3 27 27 H 1.08997 * 109.47063 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46736 * 240.00247 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00054 * 2 1 3 30 30 H 1.08995 * 109.47316 * 325.71900 * 4 3 2 31 31 H 1.08996 * 109.47308 * 85.72828 * 4 3 2 32 32 H 1.09001 * 109.47089 * 205.72204 * 4 3 2 33 33 H 1.09003 * 117.49680 * 359.97438 * 5 3 2 34 34 H 1.08997 * 117.50307 * 145.02175 * 5 3 2 35 35 H 0.97006 * 120.00031 * 356.69530 * 10 8 6 36 36 H 1.07999 * 119.91276 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.08427 * 180.29973 * 13 12 11 38 38 H 0.96997 * 120.00145 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.08859 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.91192 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.1846 2.4448 0.7774 5 6 2.7421 1.9435 -1.2637 6 6 3.5551 1.6562 0.0002 7 1 4.1884 0.7690 0.0004 8 6 4.0910 2.8378 0.7666 9 8 3.3285 3.5770 1.3526 10 7 5.4175 3.0735 0.8007 11 6 5.9075 4.2031 1.4508 12 6 6.9959 4.8933 0.9173 13 6 7.4777 6.0039 1.5453 14 6 6.8808 6.4465 2.7421 15 6 7.3781 7.5912 3.4016 16 1 6.7459 8.1375 4.0858 17 6 8.6899 8.0181 3.1687 18 7 9.6267 7.1420 2.9088 19 14 9.1043 9.8385 3.2289 20 1 9.6074 10.1872 4.5820 21 1 10.1497 10.1418 2.2188 22 1 7.8853 10.6337 2.9339 23 6 5.7856 5.7410 3.2777 24 6 5.3112 4.6354 2.6353 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 0.1335 2.1701 0.6901 31 1 1.4769 2.4344 1.8274 32 1 1.3342 3.4441 0.3686 33 1 2.8410 1.2454 -2.0949 34 1 2.5950 2.9873 -1.5410 35 1 6.0310 2.4561 0.3725 36 1 7.4556 4.5497 0.0025 37 1 8.3174 6.5401 1.1285 38 1 10.5363 7.4379 2.7477 39 1 5.3232 6.0741 4.1951 40 1 4.4713 4.0936 3.0444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160124642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:34 Heat of formation + Delta-G solvation = -17.440010 kcal Electronic energy + Delta-G solvation = -20281.265563 eV Core-core repulsion = 17253.347018 eV Total energy + Delta-G solvation = -3027.918546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48141 -39.65765 -38.20594 -36.12167 -34.78848 -33.08161 -31.49498 -30.93567 -29.03761 -27.23533 -25.11285 -24.57901 -23.28106 -22.39591 -21.00751 -19.76455 -19.31954 -18.07192 -17.91170 -17.04454 -16.27621 -15.88577 -15.76939 -15.53056 -15.25265 -14.85859 -14.48443 -14.10704 -13.93938 -13.84561 -13.61281 -13.30874 -13.26412 -12.99591 -12.85918 -12.72923 -12.58466 -12.31591 -11.99946 -11.88500 -11.64430 -11.58680 -11.12485 -11.01295 -10.75854 -10.51963 -10.28767 -9.49837 -9.01677 -8.73662 -6.24888 0.80856 1.11142 1.35945 1.41317 1.53558 1.74103 2.18800 2.34705 2.60662 2.86926 3.65255 3.70475 3.74325 3.89713 4.12759 4.19611 4.37192 4.47725 4.48059 4.58119 4.77860 4.86118 4.88897 4.93238 4.98637 5.05309 5.09931 5.13751 5.16301 5.23250 5.27643 5.34846 5.43128 5.46463 5.61701 5.63172 5.86987 6.01491 6.09382 6.34072 6.59783 6.79164 6.87277 6.97735 7.48328 8.19215 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.050391 B = 0.003332 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.518414 B = 8402.377763 C = 8646.568990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.104 4.104 5 C -0.133 4.133 6 C -0.189 4.189 7 H 0.150 0.850 8 C 0.521 3.479 9 O -0.567 6.567 10 N -0.643 5.643 11 C -0.007 4.007 12 C -0.101 4.101 13 C -0.189 4.189 14 C 0.083 3.917 15 C -0.506 4.506 16 H 0.074 0.926 17 C 0.052 3.948 18 N -0.798 5.798 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.260 1.260 22 H -0.262 1.262 23 C -0.246 4.246 24 C -0.077 4.077 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.295 0.705 39 H 0.090 0.910 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.753 -12.582 -9.257 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.161 4.161 5 C -0.170 4.170 6 C -0.210 4.210 7 H 0.168 0.832 8 C 0.310 3.690 9 O -0.447 6.447 10 N -0.288 5.288 11 C -0.100 4.100 12 C -0.121 4.121 13 C -0.209 4.209 14 C 0.081 3.919 15 C -0.533 4.533 16 H 0.092 0.908 17 C -0.168 4.168 18 N -0.422 5.422 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.184 1.184 22 H -0.186 1.186 23 C -0.266 4.266 24 C -0.097 4.097 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.039 -12.144 -8.896 17.559 hybrid contribution 0.840 0.813 0.340 1.217 sum -8.199 -11.331 -8.556 16.396 Atomic orbital electron populations 1.21829 0.94821 1.02221 1.02004 1.21111 0.96639 0.91139 1.03006 1.21688 0.89995 0.97976 0.99694 1.21360 0.98907 0.96770 0.99094 1.23287 1.00121 1.02699 0.90924 1.22364 0.96845 0.98218 1.03601 0.83249 1.20511 0.81673 0.86161 0.80655 1.90678 1.57463 1.50247 1.46291 1.42893 1.07323 1.23985 1.54556 1.17146 1.01632 0.94855 0.96362 1.20449 0.96980 0.95486 0.99211 1.20652 1.03268 0.99777 0.97219 1.17898 0.90988 0.91510 0.91530 1.19700 0.98110 1.10389 1.25123 0.90776 1.26739 0.94998 1.04119 0.90933 1.69940 1.02782 1.38453 1.31002 0.85360 0.78917 0.76894 0.79597 1.18334 1.18377 1.18613 1.20722 1.04005 0.99937 1.01913 1.20398 0.98350 0.97041 0.93872 0.92914 0.92284 0.91357 0.89605 0.91503 0.90714 0.94103 0.94451 0.84600 0.90106 0.74962 0.85984 0.88305 0.89434 0.89127 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.92 71.98 0.64 -1.43 16 2 C -0.08 -1.23 6.12 30.59 0.19 -1.04 16 3 C -0.09 -1.99 2.47 -52.18 -0.13 -2.12 16 4 C -0.10 -2.83 7.73 71.98 0.56 -2.28 16 5 C -0.13 -2.60 9.52 30.60 0.29 -2.31 16 6 C -0.19 -4.39 5.91 -11.54 -0.07 -4.46 16 7 H 0.15 2.52 8.14 -2.39 -0.02 2.50 16 8 C 0.52 18.02 7.40 87.65 0.65 18.67 16 9 O -0.57 -24.42 10.72 -3.05 -0.03 -24.46 16 10 N -0.64 -22.57 5.30 -303.12 -1.61 -24.18 16 11 C -0.01 -0.31 6.25 38.56 0.24 -0.07 16 12 C -0.10 -4.68 9.90 22.14 0.22 -4.46 16 13 C -0.19 -10.02 8.74 22.48 0.20 -9.82 16 14 C 0.08 4.70 5.57 -21.28 -0.12 4.59 16 15 C -0.51 -28.11 8.94 23.39 0.21 -27.90 16 16 H 0.07 4.05 8.02 -2.91 -0.02 4.03 16 17 C 0.05 2.61 4.77 85.24 0.41 3.01 16 18 N -0.80 -41.03 11.78 21.82 0.26 -40.78 16 19 Si 0.97 37.83 29.66 68.60 2.03 39.87 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.25 -13.37 9.74 22.48 0.22 -13.15 16 24 C -0.08 -3.88 8.59 22.14 0.19 -3.69 16 25 H 0.05 0.82 6.45 -2.38 -0.02 0.80 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.94 7.90 -2.38 -0.02 0.93 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.64 5.58 -2.39 -0.01 1.62 16 31 H 0.04 1.31 7.26 -2.39 -0.02 1.29 16 32 H 0.04 1.19 7.02 -2.39 -0.02 1.18 16 33 H 0.14 1.71 8.05 -2.39 -0.02 1.70 16 34 H 0.08 1.90 8.05 -2.39 -0.02 1.89 16 35 H 0.41 11.10 8.82 -92.70 -0.82 10.28 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.10 5.29 6.53 -2.91 -0.02 5.27 16 38 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 39 H 0.09 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.10 5.03 6.45 -2.91 -0.02 5.01 16 Total: -1.00 -66.72 326.45 4.57 -62.14 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: 0.23 Total: 33.85 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 3.69 Total: -46.45 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -1.35 Total: -64.95 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.03 Total: -24.46 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.87 kcal Total: -66.72 4.57 -62.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.701 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds