Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.52999 * 115.56047 * 325.68958 * 3 2 1 5 5 C 1.53003 * 117.50037 * 111.37259 * 3 2 1 6 6 C 1.52996 * 117.50294 * 179.97438 * 3 2 1 7 7 H 1.08996 * 117.51837 * 145.02828 * 6 3 2 8 8 C 1.50704 * 117.49375 * 0.02562 * 6 3 2 9 9 O 1.21282 * 120.00258 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99725 * 179.97438 * 8 6 3 11 11 C 1.39244 * 120.00250 * 186.11139 * 10 8 6 12 12 C 1.39478 * 119.83644 * 216.69684 * 11 10 8 13 13 C 1.36372 * 120.17049 * 180.02562 * 12 11 10 14 14 C 1.40871 * 119.82535 * 359.97438 * 13 12 11 15 15 C 1.41150 * 120.16298 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00258 * 340.04455 * 15 14 13 17 17 C 1.39910 * 120.00178 * 160.04112 * 15 14 13 18 18 N 1.30867 * 119.99919 * 329.11390 * 17 15 14 19 19 Si 1.86797 * 119.99865 * 149.11270 * 17 15 14 20 20 H 1.48508 * 109.46837 * 265.01184 * 19 17 15 21 21 H 1.48495 * 109.47349 * 25.01133 * 19 17 15 22 22 H 1.48496 * 109.47077 * 145.01604 * 19 17 15 23 23 C 1.40869 * 119.67286 * 0.25223 * 14 13 12 24 24 C 1.36373 * 119.83053 * 359.48722 * 23 14 13 25 25 H 1.08991 * 109.47206 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.47041 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47509 * 240.00040 * 2 1 3 29 29 H 1.08998 * 109.47041 * 119.99838 * 2 1 3 30 30 H 1.09002 * 109.47151 * 274.31270 * 4 3 2 31 31 H 1.09003 * 109.47352 * 34.30854 * 4 3 2 32 32 H 1.09001 * 109.47381 * 154.31206 * 4 3 2 33 33 H 1.09006 * 117.49389 * 0.02562 * 5 3 2 34 34 H 1.09000 * 117.49899 * 214.98061 * 5 3 2 35 35 H 0.97009 * 120.00426 * 6.11781 * 10 8 6 36 36 H 1.08004 * 119.91652 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.08798 * 180.02562 * 13 12 11 38 38 H 0.97003 * 120.00156 * 179.97438 * 18 17 15 39 39 H 1.08008 * 120.08288 * 179.72548 * 23 14 13 40 40 H 1.07997 * 119.92196 * 180.27291 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1852 2.4449 -0.7780 5 6 2.7419 1.9437 1.2638 6 6 3.5550 1.6563 0.0006 7 1 3.9433 2.5109 -0.5534 8 6 4.4307 0.4297 0.0006 9 8 3.9283 -0.6741 0.0005 10 7 5.7722 0.5595 0.0006 11 6 6.5807 -0.5668 -0.1279 12 6 7.7808 -0.6438 0.5787 13 6 8.5781 -1.7435 0.4576 14 6 8.1865 -2.8036 -0.3834 15 6 9.0066 -3.9450 -0.5145 16 1 10.0522 -3.8920 -0.2494 17 6 8.4649 -5.1450 -0.9877 18 7 7.2114 -5.4359 -0.7496 19 14 9.5309 -6.3319 -1.9594 20 1 9.3463 -6.0870 -3.4125 21 1 10.9567 -6.1249 -1.5998 22 1 9.1370 -7.7273 -1.6387 23 6 6.9754 -2.7165 -1.0975 24 6 6.1860 -1.6127 -0.9621 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4776 2.4339 -1.8280 31 1 0.1339 2.1707 -0.6908 32 1 1.3352 3.4444 -0.3696 33 1 2.8406 1.2456 2.0951 34 1 2.5946 2.9876 1.5409 35 1 6.1746 1.4377 0.0901 36 1 8.0798 0.1700 1.2228 37 1 9.5069 -1.8019 1.0056 38 1 6.8357 -6.2678 -1.0780 39 1 6.6709 -3.5235 -1.7476 40 1 5.2550 -1.5463 -1.5054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160124778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = -1.681885 kcal Electronic energy + Delta-G solvation = -20457.169152 eV Core-core repulsion = 17429.933930 eV Total energy + Delta-G solvation = -3027.235222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09933 -38.10421 -36.64677 -34.36870 -33.00720 -32.06200 -29.50650 -29.12459 -28.25356 -25.46100 -23.69682 -23.49611 -21.32214 -20.82845 -19.48098 -18.70557 -17.34347 -16.77369 -16.22761 -15.22586 -14.93640 -14.59887 -14.22845 -14.07051 -13.90295 -13.23508 -13.12471 -12.96030 -12.58969 -12.17698 -12.01869 -11.99923 -11.81639 -11.73980 -11.43472 -11.14247 -11.08677 -10.92557 -10.80123 -10.52336 -10.05215 -9.92121 -9.74297 -9.68388 -9.29102 -8.95478 -8.59542 -7.51733 -7.11705 -6.83226 -4.25247 2.57750 2.95360 3.06994 3.10696 3.11238 3.31942 3.70490 3.90665 3.95735 4.54898 4.65303 4.79144 4.92853 5.04652 5.33524 5.40717 5.52818 5.61801 5.66677 5.71078 5.71886 5.78567 5.93358 6.01435 6.13951 6.18107 6.28689 6.39835 6.44939 6.71713 6.84895 7.00268 7.07846 7.14043 7.31968 7.58683 7.71562 7.98866 8.05172 8.23366 8.36689 8.60258 8.86249 8.86565 9.05494 10.06817 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.003931 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.615773 B = 7121.437760 C = 7812.941477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.090 4.090 4 C -0.122 4.122 5 C -0.151 4.151 6 C -0.184 4.184 7 H 0.117 0.883 8 C 0.525 3.475 9 O -0.524 6.524 10 N -0.650 5.650 11 C -0.016 4.016 12 C -0.096 4.096 13 C -0.223 4.223 14 C 0.110 3.890 15 C -0.465 4.465 16 H 0.081 0.919 17 C 0.085 3.915 18 N -0.767 5.767 19 Si 0.900 3.100 20 H -0.266 1.266 21 H -0.260 1.260 22 H -0.277 1.277 23 C -0.171 4.171 24 C -0.075 4.075 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.284 0.716 39 H 0.109 0.891 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 12.212 0.073 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.091 4.091 4 C -0.179 4.179 5 C -0.188 4.188 6 C -0.206 4.206 7 H 0.135 0.865 8 C 0.312 3.688 9 O -0.400 6.400 10 N -0.292 5.292 11 C -0.108 4.108 12 C -0.116 4.116 13 C -0.243 4.243 14 C 0.107 3.893 15 C -0.493 4.493 16 H 0.099 0.901 17 C -0.137 4.137 18 N -0.389 5.389 19 Si 0.723 3.277 20 H -0.191 1.191 21 H -0.183 1.183 22 H -0.203 1.203 23 C -0.191 4.191 24 C -0.095 4.095 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.226 0.774 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.067 11.234 0.046 14.436 hybrid contribution 0.773 -0.063 -0.319 0.838 sum -8.294 11.171 -0.273 13.916 Atomic orbital electron populations 1.21935 0.96824 1.01266 1.01091 1.21092 0.93715 0.92359 1.04260 1.21554 0.90640 0.97602 0.99268 1.21506 0.99888 0.96917 0.99564 1.23176 1.02217 1.02087 0.91322 1.22381 0.94052 0.99250 1.04897 0.86483 1.19610 0.82427 0.89481 0.77321 1.90714 1.73354 1.27063 1.48879 1.42950 1.05215 1.09089 1.71988 1.17077 0.94879 0.91105 1.07736 1.20062 0.95140 0.97877 0.98564 1.20465 1.01595 0.96717 1.05532 1.17597 0.91408 0.91856 0.88407 1.19542 0.97260 0.93922 1.38527 0.90062 1.25966 0.95027 0.98826 0.93878 1.69956 1.14786 1.22771 1.31430 0.86443 0.81569 0.78815 0.80849 1.19120 1.18347 1.20282 1.20760 0.97155 0.97560 1.03648 1.20282 0.98195 0.93933 0.97093 0.93161 0.92769 0.92916 0.90615 0.90808 0.92159 0.90998 0.92627 0.88359 0.88270 0.77433 0.89328 0.88732 0.90544 0.87278 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.92 37.16 0.33 -1.39 16 2 C -0.08 -1.10 4.36 -26.73 -0.12 -1.21 16 3 C -0.09 -1.11 2.47 -154.51 -0.38 -1.49 16 4 C -0.12 -1.16 9.49 37.16 0.35 -0.80 16 5 C -0.15 -1.73 9.52 -26.75 -0.25 -1.99 16 6 C -0.18 -2.44 5.91 -91.79 -0.54 -2.98 16 7 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 8 C 0.52 9.53 7.28 -10.98 -0.08 9.45 16 9 O -0.52 -11.53 11.03 5.56 0.06 -11.47 16 10 N -0.65 -11.87 5.30 -9.74 -0.05 -11.92 16 11 C -0.02 -0.37 6.22 -83.57 -0.52 -0.89 16 12 C -0.10 -2.17 9.90 -39.79 -0.39 -2.56 16 13 C -0.22 -5.51 9.74 -39.26 -0.38 -5.89 16 14 C 0.11 2.98 5.59 -106.80 -0.60 2.38 16 15 C -0.46 -12.40 8.96 -37.85 -0.34 -12.73 16 16 H 0.08 2.08 8.00 -52.49 -0.42 1.66 16 17 C 0.08 2.14 4.84 -17.34 -0.08 2.06 16 18 N -0.77 -20.18 11.54 55.55 0.64 -19.54 16 19 Si 0.90 18.53 29.65 -169.99 -5.04 13.48 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 23 C -0.17 -4.64 8.73 -39.26 -0.34 -4.98 16 24 C -0.08 -1.90 8.57 -39.79 -0.34 -2.24 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.54 6.45 -51.93 -0.33 0.20 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.26 7.26 -51.93 -0.38 0.88 16 29 H 0.07 1.22 7.01 -51.93 -0.36 0.85 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.62 5.59 -51.93 -0.29 0.33 16 32 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 33 H 0.10 1.25 8.05 -51.93 -0.42 0.84 16 34 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.39 5.67 8.82 -40.82 -0.36 5.31 16 36 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 39 H 0.11 3.03 6.34 -52.48 -0.33 2.70 16 40 H 0.10 2.43 6.67 -52.49 -0.35 2.08 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -29.92 326.47 -8.91 -38.82 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.75 Total: 10.97 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -3.69 Total: -25.27 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.59 Total: -31.46 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.06 Total: -11.47 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.04 Total: 13.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.92 -8.91 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.141 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds