Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47224 * 2 1 4 4 C 1.52999 * 115.56047 * 325.68958 * 3 2 1 5 5 C 1.53003 * 117.50037 * 111.37259 * 3 2 1 6 6 C 1.52996 * 117.50294 * 179.97438 * 3 2 1 7 7 H 1.08996 * 117.51837 * 145.02828 * 6 3 2 8 8 C 1.50704 * 117.49375 * 0.02562 * 6 3 2 9 9 O 1.21282 * 120.00258 * 359.97438 * 8 6 3 10 10 N 1.34774 * 119.99725 * 179.97438 * 8 6 3 11 11 C 1.39244 * 120.00250 * 186.11139 * 10 8 6 12 12 C 1.39478 * 119.83644 * 216.69684 * 11 10 8 13 13 C 1.36372 * 120.17049 * 180.02562 * 12 11 10 14 14 C 1.40871 * 119.82535 * 359.97438 * 13 12 11 15 15 C 1.41150 * 120.16298 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00258 * 340.04455 * 15 14 13 17 17 C 1.39910 * 120.00178 * 160.04112 * 15 14 13 18 18 N 1.30867 * 119.99919 * 329.11390 * 17 15 14 19 19 Si 1.86797 * 119.99865 * 149.11270 * 17 15 14 20 20 H 1.48508 * 109.46837 * 265.01184 * 19 17 15 21 21 H 1.48495 * 109.47349 * 25.01133 * 19 17 15 22 22 H 1.48496 * 109.47077 * 145.01604 * 19 17 15 23 23 C 1.40869 * 119.67286 * 0.25223 * 14 13 12 24 24 C 1.36373 * 119.83053 * 359.48722 * 23 14 13 25 25 H 1.08991 * 109.47206 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.47041 * 60.00162 * 1 2 3 27 27 H 1.09002 * 109.46817 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47509 * 240.00040 * 2 1 3 29 29 H 1.08998 * 109.47041 * 119.99838 * 2 1 3 30 30 H 1.09002 * 109.47151 * 274.31270 * 4 3 2 31 31 H 1.09003 * 109.47352 * 34.30854 * 4 3 2 32 32 H 1.09001 * 109.47381 * 154.31206 * 4 3 2 33 33 H 1.09006 * 117.49389 * 0.02562 * 5 3 2 34 34 H 1.09000 * 117.49899 * 214.98061 * 5 3 2 35 35 H 0.97009 * 120.00426 * 6.11781 * 10 8 6 36 36 H 1.08004 * 119.91652 * 359.97438 * 12 11 10 37 37 H 1.08001 * 120.08798 * 180.02562 * 13 12 11 38 38 H 0.97003 * 120.00156 * 179.97438 * 18 17 15 39 39 H 1.08008 * 120.08288 * 179.72548 * 23 14 13 40 40 H 1.07997 * 119.92196 * 180.27291 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.1852 2.4449 -0.7780 5 6 2.7419 1.9437 1.2638 6 6 3.5550 1.6563 0.0006 7 1 3.9433 2.5109 -0.5534 8 6 4.4307 0.4297 0.0006 9 8 3.9283 -0.6741 0.0005 10 7 5.7722 0.5595 0.0006 11 6 6.5807 -0.5668 -0.1279 12 6 7.7808 -0.6438 0.5787 13 6 8.5781 -1.7435 0.4576 14 6 8.1865 -2.8036 -0.3834 15 6 9.0066 -3.9450 -0.5145 16 1 10.0522 -3.8920 -0.2494 17 6 8.4649 -5.1450 -0.9877 18 7 7.2114 -5.4359 -0.7496 19 14 9.5309 -6.3319 -1.9594 20 1 9.3463 -6.0870 -3.4125 21 1 10.9567 -6.1249 -1.5998 22 1 9.1370 -7.7273 -1.6387 23 6 6.9754 -2.7165 -1.0975 24 6 6.1860 -1.6127 -0.9621 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4776 2.4339 -1.8280 31 1 0.1339 2.1707 -0.6908 32 1 1.3352 3.4444 -0.3696 33 1 2.8406 1.2456 2.0951 34 1 2.5946 2.9876 1.5409 35 1 6.1746 1.4377 0.0901 36 1 8.0798 0.1700 1.2228 37 1 9.5069 -1.8019 1.0056 38 1 6.8357 -6.2678 -1.0780 39 1 6.6709 -3.5235 -1.7476 40 1 5.2550 -1.5463 -1.5054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160124778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = -18.206942 kcal Electronic energy + Delta-G solvation = -20457.885732 eV Core-core repulsion = 17429.933930 eV Total energy + Delta-G solvation = -3027.951802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48935 -39.66137 -38.17801 -36.14281 -34.78351 -33.13257 -31.46335 -30.95872 -29.12663 -27.17789 -24.95695 -24.67584 -23.21938 -22.50941 -20.97763 -19.85806 -19.28740 -18.17709 -17.83118 -17.04300 -16.18055 -15.84344 -15.74082 -15.59495 -15.16443 -14.73688 -14.63379 -14.18116 -14.00594 -13.96229 -13.79111 -13.34214 -13.10337 -12.86071 -12.80595 -12.65708 -12.55400 -12.31458 -12.06130 -11.84286 -11.76195 -11.61442 -11.15860 -11.00720 -10.78973 -10.53042 -10.29269 -9.48994 -9.01648 -8.72055 -6.25108 0.80237 1.11235 1.35083 1.42281 1.51512 1.75301 2.17136 2.36224 2.62509 2.86233 3.63486 3.70227 3.80233 3.89362 4.11617 4.20187 4.40613 4.42147 4.46295 4.60562 4.71136 4.81570 4.90520 4.92744 4.97870 5.06815 5.09562 5.14716 5.18470 5.24515 5.26101 5.30189 5.41643 5.45943 5.63241 5.64301 5.85505 6.05917 6.09189 6.31139 6.62527 6.79576 6.87560 6.98818 7.49889 8.20303 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.003931 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.615773 B = 7121.437760 C = 7812.941477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.095 4.095 4 C -0.116 4.116 5 C -0.131 4.131 6 C -0.190 4.190 7 H 0.151 0.849 8 C 0.518 3.482 9 O -0.570 6.570 10 N -0.643 5.643 11 C -0.005 4.005 12 C -0.092 4.092 13 C -0.233 4.233 14 C 0.079 3.921 15 C -0.500 4.500 16 H 0.084 0.916 17 C 0.043 3.957 18 N -0.808 5.808 19 Si 0.979 3.021 20 H -0.263 1.263 21 H -0.251 1.251 22 H -0.267 1.267 23 C -0.197 4.197 24 C -0.088 4.088 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.415 0.585 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.291 0.709 39 H 0.087 0.913 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 14.965 0.393 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.095 4.095 4 C -0.173 4.173 5 C -0.168 4.168 6 C -0.211 4.211 7 H 0.169 0.831 8 C 0.307 3.693 9 O -0.449 6.449 10 N -0.288 5.288 11 C -0.098 4.098 12 C -0.112 4.112 13 C -0.253 4.253 14 C 0.077 3.923 15 C -0.528 4.528 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.432 5.432 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.174 1.174 22 H -0.191 1.191 23 C -0.217 4.217 24 C -0.109 4.109 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.253 0.747 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.320 14.040 0.379 16.856 hybrid contribution 0.755 -0.837 -0.346 1.179 sum -8.565 13.203 0.032 15.738 Atomic orbital electron populations 1.21882 0.94304 1.01480 1.02721 1.20960 0.95940 0.93628 1.00917 1.21688 0.90289 0.96939 1.00605 1.21521 0.99612 0.97062 0.99111 1.23285 0.99889 1.03759 0.89899 1.22390 0.93696 0.97692 1.07299 0.83123 1.20589 0.82517 0.90656 0.75521 1.90717 1.74126 1.29554 1.50510 1.42899 1.05206 1.08828 1.71881 1.17172 0.95250 0.91563 1.05806 1.20418 0.94259 0.98296 0.98255 1.20750 1.02536 0.96871 1.05146 1.17932 0.91726 0.93269 0.89392 1.19813 0.97470 0.94814 1.40716 0.89775 1.26894 0.96268 1.00378 0.93990 1.69999 1.16779 1.23856 1.32554 0.85258 0.79670 0.76444 0.78788 1.18814 1.17395 1.19135 1.20670 0.98357 0.97925 1.04721 1.20320 0.97690 0.94766 0.98080 0.91544 0.90942 0.93568 0.94165 0.94147 0.92196 0.90083 0.90144 0.90193 0.84305 0.74745 0.85101 0.87303 0.89803 0.89477 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.92 71.98 0.64 -2.51 16 2 C -0.08 -2.23 4.36 30.60 0.13 -2.10 16 3 C -0.09 -2.12 2.47 -52.18 -0.13 -2.25 16 4 C -0.12 -1.76 9.49 71.98 0.68 -1.08 16 5 C -0.13 -2.60 9.52 30.58 0.29 -2.31 16 6 C -0.19 -4.55 5.91 -11.55 -0.07 -4.62 16 7 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 8 C 0.52 18.62 7.28 87.66 0.64 19.26 16 9 O -0.57 -26.17 11.03 -3.04 -0.03 -26.21 16 10 N -0.64 -22.67 5.30 -303.10 -1.61 -24.28 16 11 C 0.00 -0.21 6.22 38.56 0.24 0.03 16 12 C -0.09 -4.05 9.90 22.13 0.22 -3.83 16 13 C -0.23 -11.57 9.74 22.48 0.22 -11.35 16 14 C 0.08 4.47 5.59 -21.28 -0.12 4.35 16 15 C -0.50 -27.63 8.96 23.39 0.21 -27.42 16 16 H 0.08 4.42 8.00 -2.91 -0.02 4.39 16 17 C 0.04 2.24 4.84 85.24 0.41 2.65 16 18 N -0.81 -44.50 11.54 21.82 0.25 -44.25 16 19 Si 0.98 38.77 29.65 68.60 2.03 40.81 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 23 C -0.20 -11.26 8.73 22.48 0.20 -11.07 16 24 C -0.09 -4.67 8.57 22.14 0.19 -4.48 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.29 6.45 -2.39 -0.02 1.27 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.42 7.26 -2.39 -0.02 1.41 16 29 H 0.04 1.41 7.01 -2.39 -0.02 1.39 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.09 5.59 -2.39 -0.01 1.08 16 32 H 0.08 0.86 7.90 -2.39 -0.02 0.84 16 33 H 0.08 1.92 8.05 -2.38 -0.02 1.90 16 34 H 0.14 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.42 10.79 8.82 -92.70 -0.82 9.98 16 36 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 39 H 0.09 5.23 6.34 -2.91 -0.02 5.21 16 40 H 0.09 4.61 6.67 -2.91 -0.02 4.59 16 Total: -1.00 -70.25 326.47 4.63 -65.61 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.23 Total: 35.05 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 3.76 Total: -46.74 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.35 Total: -68.53 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.03 Total: -26.21 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.81 kcal Total: -70.25 4.63 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160124778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.406 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds