Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47403 * 2 1 4 4 N 1.46498 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00295 * 72.43983 * 4 3 2 6 6 O 1.21543 * 119.99931 * 192.83051 * 5 4 3 7 7 C 1.47880 * 119.99655 * 12.84027 * 5 4 3 8 8 C 1.39916 * 120.02937 * 336.44718 * 7 5 4 9 9 C 1.38325 * 120.36486 * 180.02562 * 8 7 5 10 10 C 1.37762 * 120.41029 * 0.02562 * 9 8 7 11 11 C 1.40748 * 120.03870 * 359.97438 * 10 9 8 12 12 C 1.41432 * 120.17850 * 180.27991 * 11 10 9 13 13 H 1.07993 * 120.00452 * 30.24181 * 12 11 10 14 14 C 1.39938 * 119.99889 * 210.24901 * 12 11 10 15 15 N 1.30827 * 120.00214 * 13.19403 * 14 12 11 16 16 Si 1.86804 * 120.00077 * 193.20139 * 14 12 11 17 17 H 1.48504 * 109.46981 * 89.99546 * 16 14 12 18 18 H 1.48492 * 109.46970 * 209.99507 * 16 14 12 19 19 H 1.48496 * 109.46711 * 329.99452 * 16 14 12 20 20 C 1.38996 * 120.02353 * 156.47669 * 7 5 4 21 21 C 1.46502 * 119.99593 * 252.44722 * 4 3 2 22 22 C 1.53004 * 117.49877 * 195.20897 * 21 4 3 23 23 C 1.52999 * 117.50085 * 126.54967 * 21 4 3 24 24 H 1.08993 * 109.46605 * 60.00119 * 1 2 3 25 25 H 1.09003 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46385 * 300.00313 * 1 2 3 27 27 H 1.09005 * 109.47088 * 239.99522 * 2 1 3 28 28 H 1.09003 * 109.46725 * 119.99831 * 2 1 3 29 29 H 1.08998 * 109.47021 * 59.99723 * 3 2 1 30 30 H 1.09000 * 109.46850 * 300.00141 * 3 2 1 31 31 H 1.08006 * 119.81938 * 0.02562 * 8 7 5 32 32 H 1.07999 * 119.79984 * 179.97438 * 9 8 7 33 33 H 1.07994 * 119.98067 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00174 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.20506 * 359.97438 * 20 7 5 36 36 H 1.09002 * 115.55134 * 340.87153 * 21 4 3 37 37 H 1.09002 * 117.49359 * 359.97438 * 22 21 4 38 38 H 1.08996 * 117.50251 * 145.01722 * 22 21 4 39 39 H 1.08997 * 117.49806 * 214.97471 * 23 21 4 40 40 H 1.09000 * 117.49696 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1786 1.0904 -1.1137 6 8 5.3713 0.8636 -1.0562 7 6 3.4664 0.9805 -2.4050 8 6 2.0866 0.7494 -2.4262 9 6 1.4135 0.6448 -3.6301 10 6 2.0935 0.7663 -4.8220 11 6 3.4816 0.9989 -4.8207 12 6 4.1817 1.1300 -6.0426 13 1 3.6819 1.5337 -6.9107 14 6 5.5219 0.7365 -6.1269 15 7 6.0538 0.0172 -5.1722 16 14 6.5518 1.2385 -7.6023 17 1 7.2099 2.5409 -7.3266 18 1 7.5871 0.2051 -7.8578 19 1 5.6771 1.3685 -8.7952 20 6 4.1673 1.1060 -3.5988 21 6 4.2381 1.8249 1.2089 22 6 5.7254 2.1514 1.0600 23 6 5.2914 0.8480 1.7352 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.5440 0.6521 -1.4974 32 1 0.3484 0.4659 -3.6358 33 1 1.5611 0.6830 -5.7580 34 1 6.9829 -0.2552 -5.2304 35 1 5.2323 1.2843 -3.5873 36 1 3.6688 2.3949 1.9431 37 1 6.1586 2.0812 0.0622 38 1 6.1347 2.9358 1.6965 39 1 5.4153 0.7756 2.8157 40 1 5.4387 -0.0795 1.1818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171483868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = 65.333861 kcal Electronic energy + Delta-G solvation = -21407.945718 eV Core-core repulsion = 18383.616517 eV Total energy + Delta-G solvation = -3024.329201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29105 -37.52660 -36.33898 -35.50459 -33.41932 -32.02253 -29.89337 -29.34540 -26.11175 -25.29902 -23.53308 -22.08446 -21.57383 -21.18713 -20.79865 -18.69719 -17.34823 -16.60254 -16.25635 -15.29816 -15.13149 -14.66398 -14.29663 -13.80183 -13.44942 -13.38669 -12.85358 -12.80672 -12.58777 -12.38333 -12.02262 -11.72859 -11.68333 -11.38944 -11.18254 -11.10503 -10.94143 -10.73987 -10.67878 -10.36951 -10.13276 -10.07378 -9.87664 -9.30835 -9.16311 -8.76415 -7.97918 -7.56617 -7.38979 -6.71380 -4.38380 2.23670 2.83110 3.10196 3.13125 3.16310 3.32713 3.69677 3.96219 4.20125 4.64821 4.94046 5.06377 5.09336 5.12461 5.31514 5.36511 5.49945 5.57590 5.68458 5.77463 5.82248 5.89370 5.96973 6.10967 6.14291 6.19157 6.32686 6.47247 6.52464 6.65928 6.72013 7.03246 7.05980 7.12838 7.25006 7.42432 7.68516 7.79768 7.89652 8.03541 8.21044 8.53803 8.85175 8.86219 8.91576 10.24541 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.006156 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.344964 B = 4547.155806 C = 5781.181790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.171 4.171 3 C 0.103 3.897 4 N -0.593 5.593 5 C 0.566 3.434 6 O -0.533 6.533 7 C -0.129 4.129 8 C -0.276 4.276 9 C -0.105 4.105 10 C -0.205 4.205 11 C 0.100 3.900 12 C -0.468 4.468 13 H 0.079 0.921 14 C 0.073 3.927 15 N -0.792 5.792 16 Si 0.910 3.090 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.088 4.088 21 C 0.074 3.926 22 C -0.192 4.192 23 C -0.189 4.189 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.283 0.717 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 2.474 10.354 12.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.209 4.209 3 C -0.019 4.019 4 N -0.324 5.324 5 C 0.359 3.641 6 O -0.411 6.411 7 C -0.133 4.133 8 C -0.294 4.294 9 C -0.123 4.123 10 C -0.225 4.225 11 C 0.098 3.902 12 C -0.498 4.498 13 H 0.097 0.903 14 C -0.145 4.145 15 N -0.417 5.417 16 Si 0.735 3.265 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 C -0.108 4.108 21 C -0.030 4.030 22 C -0.229 4.229 23 C -0.228 4.228 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.182 0.818 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.585 2.233 10.431 12.041 hybrid contribution 0.513 0.046 -0.623 0.808 sum -5.073 2.279 9.808 11.275 Atomic orbital electron populations 1.21734 0.94963 1.02101 1.01962 1.22505 0.96518 0.97780 1.04115 1.22193 0.79426 0.96848 1.03471 1.47255 1.06128 1.68462 1.10595 1.18963 0.86474 0.74952 0.83699 1.90582 1.15750 1.48641 1.86104 1.19462 0.94132 1.08010 0.91664 1.22845 0.94115 1.12276 1.00173 1.20530 0.97394 1.01314 0.93108 1.21220 0.95522 1.09642 0.96148 1.17576 0.91063 0.88631 0.92952 1.19528 0.95321 1.37985 0.96925 0.90286 1.25912 0.98199 0.92849 0.97562 1.69780 1.14690 1.25256 1.31965 0.86283 0.79527 0.79202 0.81527 1.19311 1.20292 1.18687 1.21512 0.99882 0.99524 0.89888 1.21605 0.89292 1.02596 0.89537 1.23686 0.96244 0.98050 1.04963 1.23249 1.04420 0.95823 0.99317 0.91915 0.92377 0.92850 0.87904 0.91887 0.91039 0.88044 0.81828 0.89036 0.88802 0.90636 0.85640 0.86042 0.85024 0.89598 0.89332 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.71 37.16 0.36 -1.22 16 2 C -0.17 -2.29 5.03 -26.73 -0.13 -2.43 16 3 C 0.10 1.44 5.07 -4.04 -0.02 1.42 16 4 N -0.59 -10.18 2.92 -170.94 -0.50 -10.68 16 5 C 0.57 12.40 7.02 -12.31 -0.09 12.31 16 6 O -0.53 -13.03 12.37 5.33 0.07 -12.96 16 7 C -0.13 -3.04 5.74 -105.04 -0.60 -3.65 16 8 C -0.28 -5.62 6.18 -38.92 -0.24 -5.86 16 9 C -0.11 -2.20 10.01 -39.72 -0.40 -2.60 16 10 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 11 C 0.10 2.66 5.51 -106.87 -0.59 2.07 16 12 C -0.47 -12.45 9.04 -37.73 -0.34 -12.79 16 13 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 14 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 15 N -0.79 -21.46 11.09 55.55 0.62 -20.84 16 16 Si 0.91 19.16 29.58 -169.99 -5.03 14.13 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 C -0.09 -2.35 8.19 -38.44 -0.31 -2.66 16 21 C 0.07 1.10 6.59 -67.93 -0.45 0.66 16 22 C -0.19 -3.04 9.62 -26.69 -0.26 -3.30 16 23 C -0.19 -2.83 9.88 -26.69 -0.26 -3.09 16 24 H 0.06 0.67 7.62 -51.93 -0.40 0.27 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 1.70 5.29 -51.93 -0.27 1.42 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 30 H 0.10 1.53 5.43 -51.93 -0.28 1.24 16 31 H 0.17 2.72 0.78 -97.64 -0.08 2.64 16 32 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 35 H 0.13 3.63 6.20 -52.49 -0.33 3.31 16 36 H 0.12 1.40 7.99 -51.93 -0.42 0.98 16 37 H 0.13 2.60 5.39 -51.93 -0.28 2.32 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.74 7.48 -51.93 -0.39 1.36 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -29.45 316.89 -9.23 -38.68 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.35 Total: 11.52 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.80 Total: -24.62 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.12 Total: -31.52 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.45 -9.23 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171483868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.013 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds