Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47403 * 2 1 4 4 N 1.46498 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00295 * 72.43983 * 4 3 2 6 6 O 1.21543 * 119.99931 * 192.83051 * 5 4 3 7 7 C 1.47880 * 119.99655 * 12.84027 * 5 4 3 8 8 C 1.39916 * 120.02937 * 336.44718 * 7 5 4 9 9 C 1.38325 * 120.36486 * 180.02562 * 8 7 5 10 10 C 1.37762 * 120.41029 * 0.02562 * 9 8 7 11 11 C 1.40748 * 120.03870 * 359.97438 * 10 9 8 12 12 C 1.41432 * 120.17850 * 180.27991 * 11 10 9 13 13 H 1.07993 * 120.00452 * 30.24181 * 12 11 10 14 14 C 1.39938 * 119.99889 * 210.24901 * 12 11 10 15 15 N 1.30827 * 120.00214 * 13.19403 * 14 12 11 16 16 Si 1.86804 * 120.00077 * 193.20139 * 14 12 11 17 17 H 1.48504 * 109.46981 * 89.99546 * 16 14 12 18 18 H 1.48492 * 109.46970 * 209.99507 * 16 14 12 19 19 H 1.48496 * 109.46711 * 329.99452 * 16 14 12 20 20 C 1.38996 * 120.02353 * 156.47669 * 7 5 4 21 21 C 1.46502 * 119.99593 * 252.44722 * 4 3 2 22 22 C 1.53004 * 117.49877 * 195.20897 * 21 4 3 23 23 C 1.52999 * 117.50085 * 126.54967 * 21 4 3 24 24 H 1.08993 * 109.46605 * 60.00119 * 1 2 3 25 25 H 1.09003 * 109.46936 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46385 * 300.00313 * 1 2 3 27 27 H 1.09005 * 109.47088 * 239.99522 * 2 1 3 28 28 H 1.09003 * 109.46725 * 119.99831 * 2 1 3 29 29 H 1.08998 * 109.47021 * 59.99723 * 3 2 1 30 30 H 1.09000 * 109.46850 * 300.00141 * 3 2 1 31 31 H 1.08006 * 119.81938 * 0.02562 * 8 7 5 32 32 H 1.07999 * 119.79984 * 179.97438 * 9 8 7 33 33 H 1.07994 * 119.98067 * 179.97438 * 10 9 8 34 34 H 0.96998 * 120.00174 * 180.02562 * 15 14 12 35 35 H 1.07994 * 120.20506 * 359.97438 * 20 7 5 36 36 H 1.09002 * 115.55134 * 340.87153 * 21 4 3 37 37 H 1.09002 * 117.49359 * 359.97438 * 22 21 4 38 38 H 1.08996 * 117.50251 * 145.01722 * 22 21 4 39 39 H 1.08997 * 117.49806 * 214.97471 * 23 21 4 40 40 H 1.09000 * 117.49696 * 359.97438 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1786 1.0904 -1.1137 6 8 5.3713 0.8636 -1.0562 7 6 3.4664 0.9805 -2.4050 8 6 2.0866 0.7494 -2.4262 9 6 1.4135 0.6448 -3.6301 10 6 2.0935 0.7663 -4.8220 11 6 3.4816 0.9989 -4.8207 12 6 4.1817 1.1300 -6.0426 13 1 3.6819 1.5337 -6.9107 14 6 5.5219 0.7365 -6.1269 15 7 6.0538 0.0172 -5.1722 16 14 6.5518 1.2385 -7.6023 17 1 7.2099 2.5409 -7.3266 18 1 7.5871 0.2051 -7.8578 19 1 5.6771 1.3685 -8.7952 20 6 4.1673 1.1060 -3.5988 21 6 4.2381 1.8249 1.2089 22 6 5.7254 2.1514 1.0600 23 6 5.2914 0.8480 1.7352 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 1.5440 0.6521 -1.4974 32 1 0.3484 0.4659 -3.6358 33 1 1.5611 0.6830 -5.7580 34 1 6.9829 -0.2552 -5.2304 35 1 5.2323 1.2843 -3.5873 36 1 3.6688 2.3949 1.9431 37 1 6.1586 2.0812 0.0622 38 1 6.1347 2.9358 1.6965 39 1 5.4153 0.7756 2.8157 40 1 5.4387 -0.0795 1.1818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171483868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = 48.984427 kcal Electronic energy + Delta-G solvation = -21408.654683 eV Core-core repulsion = 18383.616517 eV Total energy + Delta-G solvation = -3025.038166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81831 -39.20798 -37.83413 -36.92937 -35.25149 -33.29306 -31.71689 -31.16846 -27.44988 -26.98334 -25.08931 -23.32823 -23.02877 -22.49911 -22.46464 -20.34361 -19.07464 -18.04884 -17.79729 -16.97618 -16.78946 -16.12903 -15.84463 -15.23917 -15.10482 -14.82979 -14.40407 -14.22277 -14.07164 -14.03890 -13.47871 -13.19889 -12.92112 -12.85061 -12.70685 -12.51817 -12.46032 -12.15698 -11.94321 -11.82997 -11.71932 -11.68419 -11.26349 -11.09161 -10.88543 -10.42634 -9.52812 -9.31088 -9.23572 -8.62175 -6.39305 0.41207 1.00643 1.33690 1.45199 1.48451 1.93777 2.00883 2.18729 2.76089 2.97747 3.62068 3.66893 3.88667 3.98146 4.03778 4.13973 4.18091 4.42010 4.48399 4.55209 4.68646 4.74163 4.77554 4.80366 4.88835 4.99956 5.05819 5.10568 5.19514 5.26138 5.28270 5.32421 5.39899 5.51194 5.53391 5.80896 5.87644 5.96415 6.04338 6.29900 6.39343 6.62782 6.89743 6.95464 7.26016 8.35531 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.006156 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.344964 B = 4547.155806 C = 5781.181790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.171 4.171 3 C 0.093 3.907 4 N -0.584 5.584 5 C 0.555 3.445 6 O -0.572 6.572 7 C -0.145 4.145 8 C -0.250 4.250 9 C -0.106 4.106 10 C -0.211 4.211 11 C 0.065 3.935 12 C -0.505 4.505 13 H 0.081 0.919 14 C 0.026 3.974 15 N -0.838 5.838 16 Si 0.984 3.016 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.250 1.250 20 C -0.125 4.125 21 C 0.077 3.923 22 C -0.209 4.209 23 C -0.183 4.183 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.211 0.789 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.283 0.717 35 H 0.086 0.914 36 H 0.175 0.825 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.488 3.255 12.830 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.209 4.209 3 C -0.028 4.028 4 N -0.314 5.314 5 C 0.348 3.652 6 O -0.453 6.453 7 C -0.148 4.148 8 C -0.267 4.267 9 C -0.123 4.123 10 C -0.230 4.230 11 C 0.063 3.937 12 C -0.535 4.535 13 H 0.099 0.901 14 C -0.187 4.187 15 N -0.465 5.465 16 Si 0.804 3.196 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.174 1.174 20 C -0.145 4.145 21 C -0.026 4.026 22 C -0.246 4.246 23 C -0.221 4.221 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.110 0.890 31 H 0.227 0.773 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.192 0.808 37 H 0.101 0.899 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.682 3.024 12.931 15.866 hybrid contribution 1.295 -0.213 -1.181 1.766 sum -7.387 2.810 11.750 14.161 Atomic orbital electron populations 1.21743 0.92121 1.03124 1.03434 1.22414 0.98855 0.96812 1.02778 1.22477 0.77139 0.97721 1.05497 1.47312 1.07698 1.66443 1.09922 1.18886 0.86065 0.75550 0.84735 1.90590 1.17393 1.50501 1.86847 1.19838 0.95691 1.07463 0.91779 1.23601 0.92824 1.08013 1.02256 1.21060 0.99693 0.99638 0.91951 1.21529 0.94548 1.08862 0.98103 1.17922 0.92731 0.89993 0.93062 1.19799 0.96617 1.39804 0.97312 0.90054 1.26830 0.99128 0.92198 1.00512 1.69907 1.14937 1.27221 1.34412 0.85179 0.77757 0.78698 0.77916 1.19076 1.19608 1.17365 1.21288 0.98515 1.02997 0.91730 1.22153 0.89074 1.02481 0.88911 1.23569 0.97697 0.99990 1.03363 1.23223 1.04300 0.93713 1.00888 0.91755 0.91716 0.90101 0.91594 0.90983 0.86049 0.88998 0.77344 0.84285 0.87596 0.90692 0.89538 0.80795 0.89861 0.86300 0.85359 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.71 71.98 0.70 -1.64 16 2 C -0.17 -3.92 5.03 30.60 0.15 -3.77 16 3 C 0.09 2.20 5.07 86.38 0.44 2.64 16 4 N -0.58 -19.08 2.92 -813.03 -2.37 -21.45 16 5 C 0.56 25.20 7.02 86.80 0.61 25.81 16 6 O -0.57 -30.13 12.37 -3.85 -0.05 -30.18 16 7 C -0.14 -7.05 5.74 -20.14 -0.12 -7.16 16 8 C -0.25 -9.89 6.18 22.70 0.14 -9.75 16 9 C -0.11 -4.22 10.01 22.18 0.22 -4.00 16 10 C -0.21 -10.10 9.78 22.77 0.22 -9.88 16 11 C 0.06 3.65 5.51 -21.32 -0.12 3.53 16 12 C -0.51 -28.52 9.04 23.47 0.21 -28.31 16 13 H 0.08 4.34 7.88 -2.91 -0.02 4.31 16 14 C 0.03 1.44 5.19 85.25 0.44 1.88 16 15 N -0.84 -49.12 11.09 21.82 0.24 -48.87 16 16 Si 0.98 41.35 29.58 68.60 2.03 43.38 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 20 C -0.12 -7.16 8.19 23.01 0.19 -6.97 16 21 C 0.08 2.06 6.59 44.99 0.30 2.35 16 22 C -0.21 -6.48 9.62 30.62 0.29 -6.19 16 23 C -0.18 -5.17 9.88 30.62 0.30 -4.87 16 24 H 0.06 1.03 7.62 -2.39 -0.02 1.01 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 2.03 5.29 -2.38 -0.01 2.02 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.12 1.82 7.85 -2.39 -0.02 1.80 16 30 H 0.09 2.41 5.43 -2.39 -0.01 2.40 16 31 H 0.21 6.33 0.78 -45.32 -0.04 6.29 16 32 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.28 15.37 8.30 -92.71 -0.77 14.60 16 35 H 0.09 5.56 6.20 -2.91 -0.02 5.54 16 36 H 0.18 2.89 7.99 -2.39 -0.02 2.87 16 37 H 0.08 3.51 5.39 -2.39 -0.01 3.50 16 38 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.06 2.17 7.48 -2.39 -0.02 2.16 16 Total: -1.00 -73.73 316.89 4.86 -68.87 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 1.02 Total: 34.58 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 3.99 Total: -46.33 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -2.13 Total: -70.32 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -73.73 4.86 -68.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171483868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.853 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds