Wall clock time and date at job start Mon Mar 30 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34807 * 120.00092 * 2 1 4 4 C 1.46427 * 120.00021 * 5.63018 * 3 2 1 5 5 O 1.21691 * 120.00310 * 5.61805 * 4 3 2 6 6 N 1.34779 * 119.99960 * 185.61653 * 4 3 2 7 7 C 1.46498 * 120.00303 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47251 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47058 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47333 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00463 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00528 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99749 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47009 * 90.00239 * 14 12 10 16 16 H 1.48498 * 109.47209 * 210.00210 * 14 12 10 17 17 H 1.48501 * 109.47250 * 330.00317 * 14 12 10 18 18 C 1.47203 * 119.99815 * 179.97438 * 2 1 3 19 19 C 1.39835 * 120.16722 * 114.72344 * 18 2 1 20 20 C 1.37896 * 119.82624 * 179.81214 * 19 18 2 21 21 C 1.38401 * 120.17125 * 0.44727 * 20 19 18 22 22 C 1.38410 * 120.34506 * 359.78508 * 21 20 19 23 23 C 1.37897 * 120.16705 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47198 * 54.80539 * 1 2 3 25 25 H 1.09008 * 109.46871 * 294.81344 * 1 2 3 26 26 H 1.08999 * 109.47218 * 174.81454 * 1 2 3 27 27 H 1.07997 * 119.99650 * 185.63479 * 3 2 1 28 28 H 0.96999 * 119.99834 * 0.02562 * 6 4 3 29 29 H 1.09010 * 109.46928 * 300.00253 * 7 6 4 30 30 H 1.08999 * 109.46584 * 59.99708 * 7 6 4 31 31 H 1.08997 * 109.46789 * 299.99836 * 8 7 6 32 32 H 1.08994 * 109.47394 * 60.00275 * 8 7 6 33 33 H 1.09001 * 109.47000 * 300.00038 * 9 8 7 34 34 H 1.08999 * 109.46788 * 59.99393 * 9 8 7 35 35 H 0.97005 * 120.00511 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.09101 * 0.02562 * 19 18 2 37 37 H 1.07997 * 119.91497 * 180.22800 * 20 19 18 38 38 H 1.08000 * 119.83002 * 179.76433 * 21 20 19 39 39 H 1.07993 * 119.91811 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.08227 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4543 2.4325 0.1244 5 8 0.2549 2.4275 0.3302 6 7 2.1137 3.6025 0.0110 7 6 1.3865 4.8682 0.1349 8 6 2.3615 6.0352 -0.0332 9 6 1.6021 7.3571 0.0968 10 6 2.5625 8.5065 -0.0681 11 1 3.6100 8.3135 -0.2473 12 6 2.1044 9.8045 0.0108 13 7 2.9425 10.8076 -0.1336 14 14 0.2929 10.1383 0.3215 15 1 0.0495 10.2264 1.7838 16 1 -0.0919 11.4199 -0.3225 17 1 -0.5190 9.0339 -0.2498 18 6 2.2430 -1.2748 0.0006 19 6 3.0322 -1.6311 -1.0974 20 6 3.7218 -2.8252 -1.0878 21 6 3.6269 -3.6745 0.0009 22 6 2.8439 -3.3312 1.0894 23 6 2.1514 -2.1387 1.0963 24 1 -0.3633 0.5923 -0.8398 25 1 -0.3633 0.4313 0.9329 26 1 -0.3633 -1.0234 -0.0929 27 1 3.2571 1.1696 -0.0918 28 1 3.0696 3.6065 -0.1534 29 1 0.6183 4.9229 -0.6366 30 1 0.9187 4.9237 1.1179 31 1 3.1298 5.9806 0.7380 32 1 2.8288 5.9795 -1.0163 33 1 0.8335 7.4119 -0.6741 34 1 1.1350 7.4125 1.0801 35 1 2.6201 11.7209 -0.0785 36 1 3.1044 -0.9712 -1.9493 37 1 4.3347 -3.1001 -1.9335 38 1 4.1663 -4.6102 0.0010 39 1 2.7745 -3.9992 1.9350 40 1 1.5406 -1.8724 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:39 Heat of formation + Delta-G solvation = -16.029283 kcal Electronic energy + Delta-G solvation = -19212.380237 eV Core-core repulsion = 16184.522865 eV Total energy + Delta-G solvation = -3027.857372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95407 -39.19851 -35.85819 -34.77092 -33.30219 -31.52130 -31.30100 -30.25309 -28.34276 -26.72259 -24.01326 -22.83656 -22.64696 -20.92865 -20.38940 -19.01449 -17.17998 -16.87370 -16.63548 -15.75803 -15.44391 -15.23247 -15.07936 -14.25056 -14.18666 -14.06566 -13.78396 -13.58216 -13.15873 -12.79023 -12.70933 -12.53695 -11.98162 -11.89191 -11.87026 -11.53928 -11.46337 -11.06766 -10.88819 -10.14091 -9.93073 -9.76030 -9.63182 -9.45464 -9.31245 -9.22552 -8.96124 -8.67650 -8.55493 -6.06216 -4.04927 0.69885 1.04797 1.33533 3.31170 3.31411 3.36593 3.38924 3.43234 3.48498 4.34398 4.44481 4.57881 4.60258 4.76702 4.81374 5.07590 5.10223 5.19552 5.27834 5.37496 5.55678 5.59951 5.65526 5.67146 5.72300 5.87768 6.02014 6.03523 6.09696 6.14801 6.27327 6.31048 6.41330 6.45761 6.60976 6.73090 6.80951 7.23174 7.36638 7.69121 7.77648 8.37725 8.50625 8.97596 9.56032 11.06994 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043181 B = 0.002513 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.278835 B =11138.425535 C =11544.645435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.000 4.000 3 C -0.210 4.210 4 C 0.540 3.460 5 O -0.545 6.545 6 N -0.722 5.722 7 C 0.115 3.885 8 C -0.114 4.114 9 C -0.011 4.011 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C -0.059 4.059 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.101 4.101 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.400 0.600 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.014 0.986 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -29.586 -0.089 29.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.002 4.002 3 C -0.231 4.231 4 C 0.329 3.671 5 O -0.426 6.426 6 N -0.372 5.372 7 C -0.008 4.008 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 C -0.059 4.059 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.119 4.119 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.234 0.766 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.576 -29.348 0.053 29.354 hybrid contribution -0.207 0.413 0.079 0.469 sum -0.783 -28.935 0.132 28.946 Atomic orbital electron populations 1.20989 0.89789 1.01182 1.04657 1.21090 0.96294 0.91004 0.91789 1.22787 1.00211 0.91842 1.08224 1.18290 0.87164 0.84256 0.77419 1.90790 1.14645 1.87834 1.49284 1.46072 1.12335 1.06137 1.72658 1.21635 0.95643 0.81834 1.01688 1.21703 0.97826 0.94007 1.01613 1.19505 0.96441 0.92403 0.96572 1.21098 0.96010 0.89424 1.49441 0.91016 1.25031 0.97680 0.96227 0.94591 1.69911 1.34779 0.98960 1.50552 0.86773 0.85960 0.77795 0.78747 1.20245 1.21369 1.18897 1.18983 0.97716 0.94088 0.95119 1.21366 0.96150 0.97018 0.97689 1.21109 0.99553 0.94430 0.98627 1.21277 0.98915 0.99665 0.93851 1.21101 0.97326 0.96692 0.98609 1.21273 0.99341 0.93632 0.97699 0.89970 0.89249 0.92886 0.85516 0.76628 0.91804 0.91813 0.92138 0.92105 0.96314 0.96755 0.92702 0.85612 0.85758 0.86007 0.85765 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 8.32 36.01 0.30 -0.92 16 2 C 0.00 0.00 5.48 -102.20 -0.56 -0.56 16 3 C -0.21 -2.37 9.64 -37.50 -0.36 -2.73 16 4 C 0.54 7.79 7.68 -12.96 -0.10 7.69 16 5 O -0.55 -9.46 13.25 5.20 0.07 -9.39 16 6 N -0.72 -10.09 5.55 -61.70 -0.34 -10.44 16 7 C 0.11 1.92 5.67 -4.05 -0.02 1.90 16 8 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.52 -14.77 9.66 -34.45 -0.33 -15.10 16 11 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 12 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -27.84 13.96 55.43 0.77 -27.06 16 14 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 18 C -0.06 -0.55 5.23 -105.06 -0.55 -1.10 16 19 C -0.10 -0.88 9.73 -39.11 -0.38 -1.26 16 20 C -0.12 -0.86 10.03 -39.65 -0.40 -1.26 16 21 C -0.12 -0.82 10.04 -39.46 -0.40 -1.21 16 22 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 23 C -0.10 -0.86 9.78 -39.11 -0.38 -1.24 16 24 H 0.08 1.01 7.43 -51.93 -0.39 0.63 16 25 H 0.09 1.10 7.12 -51.92 -0.37 0.73 16 26 H 0.05 0.49 7.99 -51.93 -0.42 0.08 16 27 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.40 4.55 8.45 -40.82 -0.35 4.21 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -32.60 340.03 -9.07 -41.68 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.10 Total: 0.81 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -3.93 Total: -17.88 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.43 Total: -37.50 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.60 -9.07 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.648 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds