Wall clock time and date at job start Mon Mar 30 2020 02:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34807 * 120.00092 * 2 1 4 4 C 1.46427 * 120.00021 * 5.63018 * 3 2 1 5 5 O 1.21691 * 120.00310 * 5.61805 * 4 3 2 6 6 N 1.34779 * 119.99960 * 185.61653 * 4 3 2 7 7 C 1.46498 * 120.00303 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47251 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47058 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47333 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.37869 * 120.00463 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00528 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99749 * 359.97438 * 12 10 9 15 15 H 1.48508 * 109.47009 * 90.00239 * 14 12 10 16 16 H 1.48498 * 109.47209 * 210.00210 * 14 12 10 17 17 H 1.48501 * 109.47250 * 330.00317 * 14 12 10 18 18 C 1.47203 * 119.99815 * 179.97438 * 2 1 3 19 19 C 1.39835 * 120.16722 * 114.72344 * 18 2 1 20 20 C 1.37896 * 119.82624 * 179.81214 * 19 18 2 21 21 C 1.38401 * 120.17125 * 0.44727 * 20 19 18 22 22 C 1.38410 * 120.34506 * 359.78508 * 21 20 19 23 23 C 1.37897 * 120.16705 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47198 * 54.80539 * 1 2 3 25 25 H 1.09008 * 109.46871 * 294.81344 * 1 2 3 26 26 H 1.08999 * 109.47218 * 174.81454 * 1 2 3 27 27 H 1.07997 * 119.99650 * 185.63479 * 3 2 1 28 28 H 0.96999 * 119.99834 * 0.02562 * 6 4 3 29 29 H 1.09010 * 109.46928 * 300.00253 * 7 6 4 30 30 H 1.08999 * 109.46584 * 59.99708 * 7 6 4 31 31 H 1.08997 * 109.46789 * 299.99836 * 8 7 6 32 32 H 1.08994 * 109.47394 * 60.00275 * 8 7 6 33 33 H 1.09001 * 109.47000 * 300.00038 * 9 8 7 34 34 H 1.08999 * 109.46788 * 59.99393 * 9 8 7 35 35 H 0.97005 * 120.00511 * 179.97438 * 13 12 10 36 36 H 1.08000 * 120.09101 * 0.02562 * 19 18 2 37 37 H 1.07997 * 119.91497 * 180.22800 * 20 19 18 38 38 H 1.08000 * 119.83002 * 179.76433 * 21 20 19 39 39 H 1.07993 * 119.91811 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.08227 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1811 1.1675 0.0000 4 6 1.4543 2.4325 0.1244 5 8 0.2549 2.4275 0.3302 6 7 2.1137 3.6025 0.0110 7 6 1.3865 4.8682 0.1349 8 6 2.3615 6.0352 -0.0332 9 6 1.6021 7.3571 0.0968 10 6 2.5625 8.5065 -0.0681 11 1 3.6100 8.3135 -0.2473 12 6 2.1044 9.8045 0.0108 13 7 2.9425 10.8076 -0.1336 14 14 0.2929 10.1383 0.3215 15 1 0.0495 10.2264 1.7838 16 1 -0.0919 11.4199 -0.3225 17 1 -0.5190 9.0339 -0.2498 18 6 2.2430 -1.2748 0.0006 19 6 3.0322 -1.6311 -1.0974 20 6 3.7218 -2.8252 -1.0878 21 6 3.6269 -3.6745 0.0009 22 6 2.8439 -3.3312 1.0894 23 6 2.1514 -2.1387 1.0963 24 1 -0.3633 0.5923 -0.8398 25 1 -0.3633 0.4313 0.9329 26 1 -0.3633 -1.0234 -0.0929 27 1 3.2571 1.1696 -0.0918 28 1 3.0696 3.6065 -0.1534 29 1 0.6183 4.9229 -0.6366 30 1 0.9187 4.9237 1.1179 31 1 3.1298 5.9806 0.7380 32 1 2.8288 5.9795 -1.0163 33 1 0.8335 7.4119 -0.6741 34 1 1.1350 7.4125 1.0801 35 1 2.6201 11.7209 -0.0785 36 1 3.1044 -0.9712 -1.9493 37 1 4.3347 -3.1001 -1.9335 38 1 4.1663 -4.6102 0.0010 39 1 2.7745 -3.9992 1.9350 40 1 1.5406 -1.8724 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:39 Heat of formation + Delta-G solvation = -35.062040 kcal Electronic energy + Delta-G solvation = -19213.205559 eV Core-core repulsion = 16184.522865 eV Total energy + Delta-G solvation = -3028.682694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94348 -39.95296 -37.17587 -35.76815 -35.10893 -33.32996 -31.85542 -30.97271 -29.63421 -28.13100 -25.16115 -23.98984 -23.33840 -22.25290 -21.76310 -20.00473 -18.92959 -17.98913 -17.56581 -16.77609 -16.70644 -16.26440 -15.95351 -15.87561 -15.37385 -15.02833 -14.79772 -14.60170 -14.32604 -14.08237 -13.80520 -13.73429 -13.44719 -13.24033 -12.73736 -12.72423 -12.68156 -12.15244 -12.00746 -11.89685 -11.76894 -11.59877 -11.33736 -10.76851 -10.70963 -10.47256 -9.98734 -9.87076 -9.50311 -8.29891 -6.33881 -0.03280 0.49329 0.56302 1.36480 1.38055 1.50026 2.26198 2.29155 2.35914 2.84209 3.05677 3.55806 3.92402 4.06617 4.07069 4.13133 4.20130 4.21053 4.29876 4.49654 4.55140 4.56596 4.65371 4.78551 4.88609 4.90437 4.97321 5.02257 5.05233 5.14579 5.30437 5.35456 5.42548 5.52254 5.55110 5.58815 5.61074 5.61245 5.64953 6.06446 6.26873 6.62127 6.74206 7.27226 7.30937 8.86481 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043181 B = 0.002513 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.278835 B =11138.425535 C =11544.645435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.014 3.986 3 C -0.218 4.218 4 C 0.537 3.463 5 O -0.580 6.580 6 N -0.716 5.716 7 C 0.128 3.872 8 C -0.100 4.100 9 C -0.012 4.012 10 C -0.531 4.531 11 H 0.037 0.963 12 C 0.003 3.997 13 N -0.950 5.950 14 Si 0.948 3.052 15 H -0.267 1.267 16 H -0.284 1.284 17 H -0.248 1.248 18 C -0.078 4.078 19 C -0.113 4.113 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.113 4.113 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.150 0.850 28 H 0.414 0.586 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.054 -32.015 0.020 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.011 3.989 3 C -0.239 4.239 4 C 0.328 3.672 5 O -0.462 6.462 6 N -0.367 5.367 7 C 0.004 3.996 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.569 4.569 11 H 0.055 0.945 12 C -0.193 4.193 13 N -0.591 5.591 14 Si 0.772 3.228 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.171 1.171 18 C -0.078 4.078 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.131 4.131 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.168 0.832 28 H 0.250 0.750 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.873 -31.802 0.158 31.814 hybrid contribution -0.014 1.072 0.027 1.073 sum -0.887 -30.730 0.185 30.743 Atomic orbital electron populations 1.20916 0.90460 1.01745 1.03219 1.21210 0.96009 0.91705 0.89928 1.22738 1.01083 0.90347 1.09693 1.18767 0.86878 0.85073 0.76506 1.90777 1.16217 1.88318 1.50913 1.45910 1.12981 1.05199 1.72567 1.21276 0.94927 0.82255 1.01107 1.21479 0.97743 0.92638 1.01975 1.19470 0.95858 0.92952 0.96743 1.21462 0.95482 0.91271 1.48665 0.94465 1.25998 1.02799 0.96048 0.94493 1.70057 1.37238 0.99563 1.52217 0.85687 0.79923 0.78110 0.79119 1.19225 1.20976 1.17146 1.18964 0.98828 0.93795 0.96223 1.21517 0.96183 0.97791 0.97596 1.21408 0.99346 0.93931 0.99490 1.21640 0.98359 1.00392 0.93319 1.21392 0.96825 0.96437 0.99504 1.21422 0.99860 0.94143 0.97648 0.91433 0.90716 0.91210 0.83245 0.75007 0.92460 0.92449 0.91809 0.91771 0.96075 0.96215 0.92497 0.85070 0.83741 0.83644 0.83756 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 8.32 71.24 0.59 -1.76 16 2 C 0.01 0.28 5.48 -18.29 -0.10 0.18 16 3 C -0.22 -4.67 9.64 23.62 0.23 -4.44 16 4 C 0.54 15.13 7.68 86.37 0.66 15.79 16 5 O -0.58 -20.13 13.25 -4.32 -0.06 -20.19 16 6 N -0.72 -19.20 5.55 -467.35 -2.59 -21.79 16 7 C 0.13 4.16 5.67 86.38 0.49 4.65 16 8 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.44 16 10 C -0.53 -30.39 9.66 25.60 0.25 -30.15 16 11 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 12 C 0.00 0.20 5.47 84.65 0.46 0.67 16 13 N -0.95 -59.68 13.96 21.44 0.30 -59.38 16 14 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 18 C -0.08 -1.35 5.23 -20.15 -0.11 -1.46 16 19 C -0.11 -1.69 9.73 22.58 0.22 -1.47 16 20 C -0.12 -1.47 10.03 22.23 0.22 -1.25 16 21 C -0.12 -1.29 10.04 22.35 0.22 -1.06 16 22 C -0.12 -1.49 10.03 22.23 0.22 -1.26 16 23 C -0.11 -1.73 9.78 22.58 0.22 -1.51 16 24 H 0.07 1.68 7.43 -2.39 -0.02 1.67 16 25 H 0.07 1.88 7.12 -2.38 -0.02 1.86 16 26 H 0.07 1.25 7.99 -2.39 -0.02 1.23 16 27 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 28 H 0.41 8.77 8.45 -92.71 -0.78 7.98 16 29 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 34 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 35 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 36 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 39 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 40 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -70.65 340.03 3.58 -67.07 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.18 Total: 14.78 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 3.87 Total: -27.05 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -2.30 Total: -81.17 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -70.65 3.58 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.008 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds