Wall clock time and date at job start Mon Mar 30 2020 02:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47425 * 2 1 4 4 H 1.09009 * 110.91594 * 308.90635 * 3 2 1 5 5 C 1.55156 * 111.00682 * 185.00408 * 3 2 1 6 6 C 1.54320 * 102.94411 * 206.42076 * 5 3 2 7 7 N 1.47028 * 107.27076 * 22.19346 * 6 5 3 8 8 C 1.34771 * 125.64748 * 181.02118 * 7 6 5 9 9 O 1.21556 * 119.99855 * 185.34718 * 8 7 6 10 10 C 1.47883 * 120.00515 * 5.34485 * 8 7 6 11 11 C 1.39922 * 120.02938 * 172.07879 * 10 8 7 12 12 C 1.38328 * 120.35706 * 180.02562 * 11 10 8 13 13 C 1.37747 * 120.41396 * 359.71871 * 12 11 10 14 14 C 1.40751 * 120.03780 * 0.55857 * 13 12 11 15 15 C 1.41442 * 120.17432 * 179.71615 * 14 13 12 16 16 H 1.08002 * 119.99527 * 204.99783 * 15 14 13 17 17 C 1.39931 * 120.00447 * 24.99891 * 15 14 13 18 18 N 1.30833 * 119.99632 * 17.49501 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 197.49485 * 17 15 14 20 20 H 1.48500 * 109.46906 * 265.18364 * 19 17 15 21 21 H 1.48500 * 109.47117 * 145.18375 * 19 17 15 22 22 H 1.48497 * 109.47128 * 25.18090 * 19 17 15 23 23 C 1.38999 * 120.02194 * 352.10384 * 10 8 7 24 24 C 1.47428 * 108.69892 * 1.28613 * 7 6 5 25 25 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46675 * 300.00081 * 1 2 3 27 27 H 1.09001 * 109.47206 * 59.99793 * 1 2 3 28 28 H 1.09010 * 109.46666 * 239.99980 * 2 1 3 29 29 H 1.08997 * 109.47461 * 120.00631 * 2 1 3 30 30 H 1.09005 * 110.72195 * 88.05826 * 5 3 2 31 31 H 1.09002 * 110.71943 * 324.78622 * 5 3 2 32 32 H 1.08993 * 109.88922 * 262.77560 * 6 5 3 33 33 H 1.09005 * 110.00971 * 141.67982 * 6 5 3 34 34 H 1.07994 * 119.81764 * 0.04860 * 11 10 8 35 35 H 1.07999 * 119.79097 * 180.02562 * 12 11 10 36 36 H 1.08004 * 119.98248 * 180.30153 * 13 12 11 37 37 H 0.96994 * 119.99879 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.20181 * 359.95634 * 23 10 8 39 39 H 1.08994 * 110.36972 * 94.48638 * 24 7 6 40 40 H 1.09001 * 110.36135 * 216.80646 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5669 2.0225 -0.7924 5 6 3.5859 1.4857 -0.1263 6 6 3.9510 2.8217 0.5543 7 7 2.8412 3.1714 1.4530 8 6 2.7679 4.2798 2.2162 9 8 1.8465 4.4206 2.9964 10 6 3.8084 5.3247 2.1046 11 6 3.6492 6.5453 2.7697 12 6 4.6180 7.5276 2.6696 13 6 5.7530 7.3137 1.9190 14 6 5.9279 6.0944 1.2381 15 6 7.0895 5.8740 0.4617 16 1 7.0670 5.1676 -0.3550 17 6 8.2676 6.5710 0.7517 18 7 8.4138 7.1535 1.9140 19 14 9.6317 6.6700 -0.5208 20 1 10.6222 5.5925 -0.2694 21 1 10.3027 7.9913 -0.4254 22 1 9.0545 6.5047 -1.8790 23 6 4.9452 5.0951 1.3384 24 6 1.8247 2.1057 1.3856 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8872 1.4916 -1.1739 31 1 4.0397 0.6471 0.4019 32 1 4.0771 3.5993 -0.1990 33 1 4.8710 2.7089 1.1279 34 1 2.7653 6.7213 3.3648 35 1 4.4859 8.4663 3.1872 36 1 6.5072 8.0837 1.8496 37 1 9.2306 7.6364 2.1152 38 1 5.0724 4.1543 0.8235 39 1 1.9816 1.3808 2.1843 40 1 0.8235 2.5319 1.4502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176608217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:27 Heat of formation + Delta-G solvation = -11.189568 kcal Electronic energy + Delta-G solvation = -20760.249366 eV Core-core repulsion = 17732.601860 eV Total energy + Delta-G solvation = -3027.647506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.93144 -37.71718 -36.82255 -34.09274 -33.64268 -30.59186 -30.12710 -29.75610 -27.78569 -25.31312 -24.68050 -22.68110 -21.51279 -20.69265 -20.16962 -19.29752 -17.31240 -16.19104 -16.00717 -15.41422 -15.02805 -14.78641 -14.43460 -13.86620 -13.63803 -13.45125 -13.15593 -13.03164 -12.74392 -12.44007 -12.26137 -12.22157 -11.78084 -11.61306 -11.28443 -11.20499 -11.13901 -10.86082 -10.66181 -10.61088 -10.50225 -10.43826 -10.05171 -9.40688 -9.20254 -9.02298 -8.27907 -7.62984 -7.48693 -6.82589 -4.44046 2.20645 2.73757 3.03466 3.06481 3.13031 3.43258 3.82513 3.88557 4.43393 4.59676 4.64302 4.72337 5.09465 5.20866 5.24999 5.38506 5.44054 5.54372 5.60347 5.71177 5.75836 5.82667 5.94556 5.95683 5.99811 6.02607 6.16408 6.20734 6.30143 6.45783 6.64491 6.80575 6.92327 7.02928 7.18121 7.38946 7.66496 7.85085 7.90055 8.03760 8.11606 8.50299 8.78471 8.80654 8.86099 10.13181 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.004854 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.715859 B = 5767.062956 C = 6961.502107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.084 0.916 5 C -0.133 4.133 6 C 0.096 3.904 7 N -0.619 5.619 8 C 0.579 3.421 9 O -0.558 6.558 10 C -0.117 4.117 11 C -0.174 4.174 12 C -0.117 4.117 13 C -0.138 4.138 14 C 0.099 3.901 15 C -0.465 4.465 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.221 4.221 24 C 0.113 3.887 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.281 0.719 38 H 0.134 0.866 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -10.223 -5.721 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.103 0.897 5 C -0.171 4.171 6 C -0.026 4.026 7 N -0.354 5.354 8 C 0.373 3.627 9 O -0.438 6.438 10 C -0.120 4.120 11 C -0.195 4.195 12 C -0.135 4.135 13 C -0.158 4.158 14 C 0.097 3.903 15 C -0.495 4.495 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.240 4.240 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.427 -9.936 -5.109 12.890 hybrid contribution 0.824 0.169 -0.397 0.930 sum -5.604 -9.767 -5.505 12.534 Atomic orbital electron populations 1.21807 0.95773 1.01496 1.02124 1.21457 0.95946 0.95233 1.02268 1.22481 0.95975 0.96467 0.97330 0.89736 1.22835 0.95299 0.97492 1.01450 1.22569 0.90349 0.96199 0.93508 1.48323 1.21350 1.21204 1.44502 1.18627 0.85564 0.80185 0.78339 1.90658 1.36579 1.78858 1.37725 1.19261 0.95240 0.94220 1.03230 1.20466 1.00219 0.94027 1.04764 1.20686 0.94959 0.97622 1.00261 1.21573 0.96393 0.97884 0.99927 1.17576 0.91811 0.90160 0.90748 1.19503 0.94169 1.21650 1.14193 0.90339 1.25883 0.99785 0.93320 0.95126 1.69807 1.26902 1.25791 1.19652 0.86324 0.80294 0.78489 0.81783 1.19586 1.20060 1.18407 1.22473 0.96232 1.00708 1.04633 1.22244 0.92940 0.89502 0.96260 0.92832 0.92480 0.92697 0.91563 0.91665 0.90023 0.90631 0.89807 0.89995 0.88149 0.88665 0.86116 0.90802 0.84935 0.91933 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.82 37.16 0.36 -0.90 16 2 C -0.11 -0.95 5.44 -26.73 -0.15 -1.09 16 3 C -0.10 -1.11 3.02 -88.36 -0.27 -1.38 16 4 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 5 C -0.13 -1.45 6.42 -24.90 -0.16 -1.61 16 6 C 0.10 1.45 4.88 -3.06 -0.01 1.43 16 7 N -0.62 -10.97 3.32 -175.53 -0.58 -11.55 16 8 C 0.58 12.77 7.81 -12.31 -0.10 12.67 16 9 O -0.56 -13.57 16.66 5.32 0.09 -13.48 16 10 C -0.12 -2.75 5.87 -105.04 -0.62 -3.36 16 11 C -0.17 -4.17 9.60 -38.92 -0.37 -4.55 16 12 C -0.12 -2.76 10.01 -39.73 -0.40 -3.16 16 13 C -0.14 -3.51 8.69 -38.81 -0.34 -3.85 16 14 C 0.10 2.54 5.57 -106.87 -0.59 1.94 16 15 C -0.47 -11.66 9.05 -37.73 -0.34 -12.00 16 16 H 0.08 1.85 7.90 -52.49 -0.41 1.43 16 17 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 18 N -0.80 -19.96 10.97 55.55 0.61 -19.35 16 19 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.22 -5.15 8.34 -38.44 -0.32 -5.47 16 24 C 0.11 1.61 5.84 -2.41 -0.01 1.59 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.50 7.75 -51.93 -0.40 0.10 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.06 0.55 7.96 -51.93 -0.41 0.14 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.75 8.04 -51.93 -0.42 0.34 16 32 H 0.08 1.32 6.66 -51.93 -0.35 0.98 16 33 H 0.08 1.30 6.80 -51.93 -0.35 0.95 16 34 H 0.10 2.33 7.65 -52.49 -0.40 1.93 16 35 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 36 H 0.12 3.14 6.17 -52.48 -0.32 2.81 16 37 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 38 H 0.13 2.71 2.76 -57.74 -0.16 2.55 16 39 H 0.06 0.86 7.91 -51.93 -0.41 0.44 16 40 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -29.10 322.11 -9.20 -38.30 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.73 Total: 6.39 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.40 Total: -17.99 kcal Atomic # 7 Polarization: -30.92 SS G_CDS: 0.03 Total: -30.90 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.10 -9.20 -38.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176608217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.108 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds