Wall clock time and date at job start Mon Mar 30 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47425 * 2 1 4 4 H 1.09009 * 110.91594 * 308.90635 * 3 2 1 5 5 C 1.55156 * 111.00682 * 185.00408 * 3 2 1 6 6 C 1.54320 * 102.94411 * 206.42076 * 5 3 2 7 7 N 1.47028 * 107.27076 * 22.19346 * 6 5 3 8 8 C 1.34771 * 125.64748 * 181.02118 * 7 6 5 9 9 O 1.21556 * 119.99855 * 185.34718 * 8 7 6 10 10 C 1.47883 * 120.00515 * 5.34485 * 8 7 6 11 11 C 1.39922 * 120.02938 * 172.07879 * 10 8 7 12 12 C 1.38328 * 120.35706 * 180.02562 * 11 10 8 13 13 C 1.37747 * 120.41396 * 359.71871 * 12 11 10 14 14 C 1.40751 * 120.03780 * 0.55857 * 13 12 11 15 15 C 1.41442 * 120.17432 * 179.71615 * 14 13 12 16 16 H 1.08002 * 119.99527 * 204.99783 * 15 14 13 17 17 C 1.39931 * 120.00447 * 24.99891 * 15 14 13 18 18 N 1.30833 * 119.99632 * 17.49501 * 17 15 14 19 19 Si 1.86801 * 120.00322 * 197.49485 * 17 15 14 20 20 H 1.48500 * 109.46906 * 265.18364 * 19 17 15 21 21 H 1.48500 * 109.47117 * 145.18375 * 19 17 15 22 22 H 1.48497 * 109.47128 * 25.18090 * 19 17 15 23 23 C 1.38999 * 120.02194 * 352.10384 * 10 8 7 24 24 C 1.47428 * 108.69892 * 1.28613 * 7 6 5 25 25 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46675 * 300.00081 * 1 2 3 27 27 H 1.09001 * 109.47206 * 59.99793 * 1 2 3 28 28 H 1.09010 * 109.46666 * 239.99980 * 2 1 3 29 29 H 1.08997 * 109.47461 * 120.00631 * 2 1 3 30 30 H 1.09005 * 110.72195 * 88.05826 * 5 3 2 31 31 H 1.09002 * 110.71943 * 324.78622 * 5 3 2 32 32 H 1.08993 * 109.88922 * 262.77560 * 6 5 3 33 33 H 1.09005 * 110.00971 * 141.67982 * 6 5 3 34 34 H 1.07994 * 119.81764 * 0.04860 * 11 10 8 35 35 H 1.07999 * 119.79097 * 180.02562 * 12 11 10 36 36 H 1.08004 * 119.98248 * 180.30153 * 13 12 11 37 37 H 0.96994 * 119.99879 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.20181 * 359.95634 * 23 10 8 39 39 H 1.08994 * 110.36972 * 94.48638 * 24 7 6 40 40 H 1.09001 * 110.36135 * 216.80646 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5669 2.0225 -0.7924 5 6 3.5859 1.4857 -0.1263 6 6 3.9510 2.8217 0.5543 7 7 2.8412 3.1714 1.4530 8 6 2.7679 4.2798 2.2162 9 8 1.8465 4.4206 2.9964 10 6 3.8084 5.3247 2.1046 11 6 3.6492 6.5453 2.7697 12 6 4.6180 7.5276 2.6696 13 6 5.7530 7.3137 1.9190 14 6 5.9279 6.0944 1.2381 15 6 7.0895 5.8740 0.4617 16 1 7.0670 5.1676 -0.3550 17 6 8.2676 6.5710 0.7517 18 7 8.4138 7.1535 1.9140 19 14 9.6317 6.6700 -0.5208 20 1 10.6222 5.5925 -0.2694 21 1 10.3027 7.9913 -0.4254 22 1 9.0545 6.5047 -1.8790 23 6 4.9452 5.0951 1.3384 24 6 1.8247 2.1057 1.3856 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8872 1.4916 -1.1739 31 1 4.0397 0.6471 0.4019 32 1 4.0771 3.5993 -0.1990 33 1 4.8710 2.7089 1.1279 34 1 2.7653 6.7213 3.3648 35 1 4.4859 8.4663 3.1872 36 1 6.5072 8.0837 1.8496 37 1 9.2306 7.6364 2.1152 38 1 5.0724 4.1543 0.8235 39 1 1.9816 1.3808 2.1843 40 1 0.8235 2.5319 1.4502 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176608217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:23 Heat of formation + Delta-G solvation = -26.123968 kcal Electronic energy + Delta-G solvation = -20760.896970 eV Core-core repulsion = 17732.601860 eV Total energy + Delta-G solvation = -3028.295110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 5.94 seconds Orbital eigenvalues (eV) -41.41442 -39.21524 -38.53129 -35.54677 -35.11387 -32.02022 -31.81408 -31.29032 -29.00108 -27.17927 -25.98192 -23.79087 -23.10113 -22.34177 -21.14686 -20.92861 -19.00635 -17.74310 -17.42966 -17.10937 -16.50990 -16.49175 -15.73245 -15.18731 -14.89876 -14.84298 -14.52660 -14.29837 -14.17091 -13.85664 -13.54254 -13.42962 -13.39296 -12.94234 -12.80149 -12.73145 -12.36487 -12.22000 -12.03659 -12.00150 -11.58650 -11.54782 -11.42052 -11.12024 -10.99047 -10.72539 -9.77424 -9.51041 -9.36469 -8.64392 -6.35856 0.35986 0.93255 1.42931 1.49372 1.57971 2.00045 2.05667 2.23141 2.77745 3.42276 3.63065 3.66563 3.87306 3.92137 4.25146 4.33680 4.37936 4.40772 4.52138 4.57564 4.60491 4.67384 4.84942 4.92215 4.96400 5.01512 5.05728 5.06332 5.14938 5.18886 5.23141 5.29575 5.36426 5.41094 5.52635 5.59419 5.81050 5.98258 6.01847 6.19897 6.44144 6.60684 6.89844 6.94092 7.14400 8.33862 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.004854 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.715859 B = 5767.062956 C = 6961.502107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.086 0.914 5 C -0.119 4.119 6 C 0.086 3.914 7 N -0.614 5.614 8 C 0.572 3.428 9 O -0.591 6.591 10 C -0.126 4.126 11 C -0.193 4.193 12 C -0.115 4.115 13 C -0.165 4.165 14 C 0.073 3.927 15 C -0.490 4.490 16 H 0.089 0.911 17 C 0.036 3.964 18 N -0.828 5.828 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.221 4.221 24 C 0.105 3.895 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.288 0.712 38 H 0.160 0.840 39 H 0.070 0.930 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -12.319 -7.688 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.104 0.896 5 C -0.157 4.157 6 C -0.036 4.036 7 N -0.346 5.346 8 C 0.364 3.636 9 O -0.474 6.474 10 C -0.129 4.129 11 C -0.214 4.214 12 C -0.133 4.133 13 C -0.185 4.185 14 C 0.071 3.929 15 C -0.519 4.519 16 H 0.107 0.893 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.177 1.177 23 C -0.240 4.240 24 C -0.017 4.017 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.177 0.823 39 H 0.088 0.912 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.796 -12.071 -7.096 15.155 hybrid contribution 0.584 0.780 0.246 1.005 sum -5.212 -11.291 -6.850 14.198 Atomic orbital electron populations 1.21819 0.95675 1.02205 1.01650 1.21440 0.95981 0.93421 1.03431 1.22462 0.96045 0.97729 0.94770 0.89572 1.22836 0.95191 0.95105 1.02566 1.22698 0.89329 0.98609 0.92942 1.48382 1.22763 1.20374 1.43111 1.18443 0.84923 0.81243 0.78969 1.90625 1.37551 1.79864 1.39385 1.19584 0.95832 0.94745 1.02766 1.20626 1.00512 0.94690 1.05537 1.20885 0.94266 0.98470 0.99710 1.21568 0.97001 0.98112 1.01785 1.17975 0.92876 0.90728 0.91314 1.19836 0.94650 1.22762 1.14690 0.89327 1.26782 1.02030 0.92309 0.96823 1.69872 1.28008 1.26099 1.21379 0.85180 0.76933 0.78642 0.78928 1.18712 1.19659 1.17750 1.22847 0.95448 1.01419 1.04290 1.22544 0.91443 0.88646 0.99022 0.91566 0.93687 0.92516 0.89558 0.91282 0.87528 0.88964 0.90525 0.90805 0.88030 0.86535 0.87315 0.90086 0.82301 0.91178 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.82 71.98 0.71 -1.44 16 2 C -0.11 -1.42 5.44 30.59 0.17 -1.26 16 3 C -0.09 -1.70 3.02 -9.33 -0.03 -1.73 16 4 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 5 C -0.12 -2.20 6.42 31.78 0.20 -1.99 16 6 C 0.09 2.45 4.88 86.73 0.42 2.87 16 7 N -0.61 -21.43 3.32 -827.53 -2.75 -24.18 16 8 C 0.57 25.61 7.81 86.80 0.68 26.29 16 9 O -0.59 -29.44 16.66 -3.89 -0.06 -29.51 16 10 C -0.13 -6.08 5.87 -20.13 -0.12 -6.20 16 11 C -0.19 -9.52 9.60 22.70 0.22 -9.30 16 12 C -0.12 -5.59 10.01 22.17 0.22 -5.37 16 13 C -0.16 -8.64 8.69 22.77 0.20 -8.44 16 14 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 15 C -0.49 -24.61 9.05 23.47 0.21 -24.40 16 16 H 0.09 4.11 7.90 -2.91 -0.02 4.09 16 17 C 0.04 1.70 5.14 85.25 0.44 2.13 16 18 N -0.83 -41.90 10.97 21.82 0.24 -41.66 16 19 Si 0.98 35.86 29.59 68.60 2.03 37.89 16 20 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 23 C -0.22 -10.44 8.34 23.01 0.19 -10.25 16 24 C 0.11 2.85 5.84 86.93 0.51 3.36 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.04 0.72 7.75 -2.39 -0.02 0.70 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.07 0.92 7.96 -2.39 -0.02 0.90 16 30 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 32 H 0.08 2.32 6.66 -2.39 -0.02 2.31 16 33 H 0.07 2.26 6.80 -2.38 -0.02 2.24 16 34 H 0.10 4.88 7.65 -2.91 -0.02 4.86 16 35 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 36 H 0.11 5.86 6.17 -2.91 -0.02 5.85 16 37 H 0.29 13.22 8.30 -92.71 -0.77 12.46 16 38 H 0.16 6.47 2.76 -7.85 -0.02 6.45 16 39 H 0.07 1.82 7.91 -2.39 -0.02 1.80 16 40 H 0.06 1.82 8.09 -2.39 -0.02 1.80 16 Total: -1.00 -64.25 322.11 4.37 -59.88 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 1.02 Total: 29.61 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.90 Total: -32.03 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -2.51 Total: -65.84 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.51 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -64.25 4.37 -59.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176608217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.753 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.94 seconds