Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46759 * 2 1 4 4 H 1.09006 * 110.88704 * 54.29961 * 3 2 1 5 5 C 1.55159 * 111.00610 * 178.17895 * 3 2 1 6 6 C 1.54327 * 102.94399 * 153.57423 * 5 3 2 7 7 N 1.47023 * 107.27143 * 337.80951 * 6 5 3 8 8 C 1.34770 * 125.64924 * 178.96932 * 7 6 5 9 9 O 1.21553 * 120.00350 * 174.69064 * 8 7 6 10 10 C 1.47886 * 119.99931 * 354.69882 * 8 7 6 11 11 C 1.39919 * 120.02735 * 187.44668 * 10 8 7 12 12 C 1.38322 * 120.36439 * 180.02562 * 11 10 8 13 13 C 1.37753 * 120.40955 * 359.97438 * 12 11 10 14 14 C 1.40751 * 120.03792 * 359.97438 * 13 12 11 15 15 C 1.41443 * 120.17511 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99641 * 150.40425 * 15 14 13 17 17 C 1.39930 * 120.00644 * 330.41229 * 15 14 13 18 18 N 1.30823 * 120.00504 * 169.50344 * 17 15 14 19 19 Si 1.86804 * 119.99768 * 349.50018 * 17 15 14 20 20 H 1.48508 * 109.47143 * 93.44276 * 19 17 15 21 21 H 1.48496 * 109.47240 * 213.44529 * 19 17 15 22 22 H 1.48500 * 109.47023 * 333.44602 * 19 17 15 23 23 C 1.38997 * 120.02647 * 7.17619 * 10 8 7 24 24 C 1.47469 * 108.72104 * 358.97574 * 7 6 5 25 25 H 1.09000 * 109.46816 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47147 * 299.99688 * 1 2 3 27 27 H 1.08999 * 109.47227 * 60.00371 * 1 2 3 28 28 H 1.08998 * 109.47147 * 240.00311 * 2 1 3 29 29 H 1.08999 * 109.47227 * 119.99629 * 2 1 3 30 30 H 1.08992 * 110.72031 * 271.93937 * 5 3 2 31 31 H 1.08998 * 110.71585 * 35.03402 * 5 3 2 32 32 H 1.08996 * 109.88110 * 97.22396 * 6 5 3 33 33 H 1.08995 * 109.88161 * 218.39120 * 6 5 3 34 34 H 1.08005 * 119.81457 * 0.02562 * 11 10 8 35 35 H 1.07997 * 119.80175 * 179.97438 * 12 11 10 36 36 H 1.08003 * 119.98181 * 180.02562 * 13 12 11 37 37 H 0.96999 * 119.99800 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.19906 * 0.02562 * 23 10 8 39 39 H 1.09001 * 110.35008 * 265.25128 * 24 7 6 40 40 H 1.08996 * 110.40550 * 142.91903 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6091 2.0070 0.8270 5 6 3.5903 1.4844 0.0460 6 6 3.9198 2.8330 -0.6281 7 7 2.7646 3.1986 -1.4608 8 6 2.6518 4.3209 -2.1984 9 8 1.6905 4.4759 -2.9261 10 6 3.6976 5.3637 -2.1227 11 6 3.5085 6.5928 -2.7641 12 6 4.4823 7.5729 -2.6982 13 6 5.6491 7.3509 -2.0003 14 6 5.8566 6.1211 -1.3479 15 6 7.0537 5.8899 -0.6309 16 1 7.0531 5.2266 0.2214 17 6 8.2389 6.5204 -1.0258 18 7 9.2934 6.4742 -0.2530 19 14 8.3153 7.4281 -2.6567 20 1 8.0021 8.8635 -2.4395 21 1 9.6787 7.3003 -3.2310 22 1 7.3255 6.8423 -3.5961 23 6 4.8668 5.1258 -1.4096 24 6 1.7493 2.1343 -1.3553 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9460 1.4712 1.0762 31 1 4.0153 0.6542 -0.5180 32 1 4.0854 3.5966 0.1319 33 1 4.8078 2.7286 -1.2514 34 1 2.5972 6.7772 -3.3135 35 1 4.3271 8.5182 -3.1970 36 1 6.4046 8.1212 -1.9531 37 1 10.1150 6.9110 -0.5270 38 1 5.0153 4.1800 -0.9097 39 1 1.8584 1.4239 -2.1748 40 1 0.7474 2.5634 -1.3550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176608232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = -22.921258 kcal Electronic energy + Delta-G solvation = -20852.508110 eV Core-core repulsion = 17824.351879 eV Total energy + Delta-G solvation = -3028.156230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.49153 -39.40874 -38.62472 -35.52988 -35.17137 -32.48316 -32.15847 -31.42596 -29.05422 -27.09380 -26.13348 -23.97884 -23.26094 -22.36182 -21.15841 -20.94084 -19.20387 -17.79822 -17.77766 -17.36245 -16.66353 -16.41794 -15.82194 -15.46663 -14.98716 -14.78714 -14.61976 -14.37270 -14.27527 -13.99244 -13.81178 -13.61082 -13.45629 -13.24246 -12.92013 -12.79832 -12.42258 -12.29797 -12.03660 -11.70813 -11.66482 -11.55807 -11.43793 -11.24951 -11.13738 -10.73275 -9.82696 -9.65010 -9.50779 -8.88394 -6.53441 0.14855 0.72488 1.25625 1.40027 1.47070 1.88046 1.96354 2.10541 2.66102 3.38565 3.43598 3.60582 3.81758 3.86531 4.22036 4.23257 4.32408 4.37122 4.43519 4.51469 4.52371 4.57722 4.65642 4.82205 4.85264 4.89846 4.92789 5.02840 5.08017 5.13568 5.17372 5.22712 5.29390 5.40270 5.47014 5.54390 5.62759 5.72962 5.83390 6.06733 6.30251 6.39626 6.61970 6.78805 7.08805 8.18843 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.004921 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.955126 B = 5688.076178 C = 6616.159071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.085 0.915 5 C -0.121 4.121 6 C 0.084 3.916 7 N -0.613 5.613 8 C 0.572 3.428 9 O -0.585 6.585 10 C -0.116 4.116 11 C -0.181 4.181 12 C -0.089 4.089 13 C -0.229 4.229 14 C 0.065 3.935 15 C -0.470 4.470 16 H 0.070 0.930 17 C 0.049 3.951 18 N -0.848 5.848 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.252 1.252 23 C -0.202 4.202 24 C 0.106 3.894 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.294 0.706 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 -10.767 1.302 14.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.111 4.111 4 H 0.103 0.897 5 C -0.159 4.159 6 C -0.038 4.038 7 N -0.345 5.345 8 C 0.364 3.636 9 O -0.467 6.467 10 C -0.119 4.119 11 C -0.202 4.202 12 C -0.107 4.107 13 C -0.248 4.248 14 C 0.062 3.938 15 C -0.500 4.500 16 H 0.089 0.911 17 C -0.165 4.165 18 N -0.475 5.475 19 Si 0.784 3.216 20 H -0.185 1.185 21 H -0.209 1.209 22 H -0.176 1.176 23 C -0.220 4.220 24 C -0.015 4.015 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.179 0.821 39 H 0.090 0.910 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.755 -10.617 0.999 14.452 hybrid contribution 0.449 0.849 -0.542 1.103 sum -9.306 -9.768 0.456 13.499 Atomic orbital electron populations 1.21818 0.95621 1.02221 1.01695 1.21438 0.96017 0.93417 1.03410 1.22424 0.95650 0.97621 0.95406 0.89655 1.22826 0.95452 0.95026 1.02557 1.22702 0.88423 0.98411 0.94238 1.48409 1.20359 1.19635 1.46120 1.18349 0.85429 0.81176 0.78654 1.90647 1.34938 1.79856 1.41278 1.19692 0.94967 0.94936 1.02345 1.20756 1.00442 0.93775 1.05182 1.20877 0.93026 0.98857 0.97900 1.21371 0.98970 0.97577 1.06888 1.17898 0.93482 0.91222 0.91192 1.19460 0.92338 1.25189 1.12970 0.91137 1.26687 0.94729 0.94187 1.00927 1.69651 1.03611 1.36753 1.37451 0.85617 0.77202 0.79356 0.79455 1.18535 1.20948 1.17557 1.22884 0.94270 1.01308 1.03581 1.22499 0.91535 0.88571 0.98912 0.91599 0.92603 0.93490 0.91167 0.89770 0.87906 0.88899 0.90596 0.90553 0.86712 0.84818 0.87941 0.89592 0.82110 0.90988 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.79 71.98 0.70 -1.36 16 2 C -0.11 -1.38 5.44 30.60 0.17 -1.21 16 3 C -0.09 -1.66 3.04 -9.40 -0.03 -1.69 16 4 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 5 C -0.12 -2.22 6.42 31.78 0.20 -2.01 16 6 C 0.08 2.32 4.87 86.73 0.42 2.74 16 7 N -0.61 -20.05 3.33 -829.65 -2.76 -22.81 16 8 C 0.57 23.61 7.81 86.80 0.68 24.29 16 9 O -0.58 -26.86 16.66 -3.88 -0.06 -26.92 16 10 C -0.12 -5.10 5.87 -20.13 -0.12 -5.22 16 11 C -0.18 -7.87 9.60 22.70 0.22 -7.65 16 12 C -0.09 -3.73 10.01 22.17 0.22 -3.51 16 13 C -0.23 -10.62 6.86 22.77 0.16 -10.47 16 14 C 0.06 3.16 5.19 -21.32 -0.11 3.05 16 15 C -0.47 -24.66 9.62 23.47 0.23 -24.44 16 16 H 0.07 3.87 8.06 -2.91 -0.02 3.84 16 17 C 0.05 2.53 5.49 85.25 0.47 2.99 16 18 N -0.85 -44.49 13.93 21.82 0.30 -44.19 16 19 Si 0.96 41.54 24.34 68.60 1.67 43.21 16 20 H -0.26 -10.67 6.74 99.48 0.67 -10.00 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.25 -11.24 6.42 99.48 0.64 -10.60 16 23 C -0.20 -8.91 8.35 23.01 0.19 -8.72 16 24 C 0.11 2.71 5.69 86.85 0.49 3.20 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.71 7.59 -2.39 -0.02 0.69 16 28 H 0.07 0.89 8.03 -2.39 -0.02 0.87 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 32 H 0.08 2.27 6.62 -2.39 -0.02 2.25 16 33 H 0.08 2.24 6.85 -2.39 -0.02 2.22 16 34 H 0.11 4.78 7.65 -2.91 -0.02 4.75 16 35 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.10 4.67 4.08 -2.91 -0.01 4.66 16 37 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 38 H 0.16 6.30 2.74 -8.52 -0.02 6.28 16 39 H 0.07 1.74 7.96 -2.39 -0.02 1.72 16 40 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 Total: -1.00 -62.54 315.31 3.96 -58.58 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.92 Total: 22.15 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 3.89 Total: -30.02 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -2.46 Total: -67.01 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.06 Total: -26.92 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.67 Total: 43.21 kcal Total: -62.54 3.96 -58.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176608232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.658 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds