Wall clock time and date at job start Mon Mar 30 2020 01:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46929 * 2 1 4 4 C 1.52999 * 115.55514 * 325.58031 * 3 2 1 5 5 C 1.53001 * 117.49629 * 111.25529 * 3 2 1 6 6 C 1.53008 * 117.49525 * 179.91527 * 3 2 1 7 7 H 1.08997 * 117.49633 * 144.97373 * 6 3 2 8 8 C 1.50703 * 117.49765 * 359.97337 * 6 3 2 9 9 O 1.21277 * 120.00091 * 352.82738 * 8 6 3 10 10 N 1.34777 * 119.99709 * 172.82874 * 8 6 3 11 11 C 1.37141 * 119.99791 * 5.59188 * 10 8 6 12 12 H 1.07994 * 120.00521 * 55.74368 * 11 10 8 13 13 C 1.38895 * 119.99761 * 235.73606 * 11 10 8 14 14 N 1.31423 * 119.99751 * 9.08459 * 13 11 10 15 15 Si 1.86797 * 119.99862 * 189.08469 * 13 11 10 16 16 H 1.48500 * 109.47362 * 90.00149 * 15 13 11 17 17 H 1.48504 * 109.46993 * 209.99960 * 15 13 11 18 18 H 1.48494 * 109.47194 * 329.99916 * 15 13 11 19 19 C 1.39789 * 119.99753 * 185.59442 * 10 8 6 20 20 C 1.38954 * 120.07784 * 354.58565 * 19 10 8 21 21 C 1.38082 * 119.91878 * 179.70347 * 20 19 10 22 22 C 1.38309 * 120.08075 * 0.57114 * 21 20 19 23 23 C 1.38314 * 120.15273 * 359.72411 * 22 21 20 24 24 C 1.38078 * 120.07668 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46949 * 300.00328 * 1 2 3 27 27 H 1.09001 * 109.47280 * 60.00038 * 1 2 3 28 28 H 1.09008 * 109.46794 * 239.99844 * 2 1 3 29 29 H 1.08992 * 109.46919 * 120.00397 * 2 1 3 30 30 H 1.09003 * 109.46504 * 34.41703 * 4 3 2 31 31 H 1.08996 * 109.47307 * 274.42421 * 4 3 2 32 32 H 1.08996 * 109.47510 * 154.41638 * 4 3 2 33 33 H 1.09001 * 117.49889 * 214.99685 * 5 3 2 34 34 H 1.08997 * 117.49746 * 0.02562 * 5 3 2 35 35 H 0.96998 * 119.99524 * 184.98282 * 14 13 11 36 36 H 1.08005 * 120.04357 * 359.97438 * 20 19 10 37 37 H 1.07999 * 119.96185 * 180.29436 * 21 20 19 38 38 H 1.08000 * 119.92112 * 179.74970 * 22 21 20 39 39 H 1.07997 * 119.96001 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.04133 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1864 2.4443 -0.7802 5 6 2.7393 1.9445 1.2649 6 6 3.5551 1.6561 0.0020 7 1 3.9436 2.5101 -0.5528 8 6 4.4307 0.4296 0.0045 9 8 3.9347 -0.6693 0.1359 10 7 5.7650 0.5539 -0.1394 11 6 6.3379 1.7995 -0.1729 12 1 6.1732 2.4917 0.6396 13 6 7.1301 2.1708 -1.2516 14 7 7.1878 1.4056 -2.3186 15 14 8.1135 3.7576 -1.1859 16 1 9.4559 3.4846 -0.6127 17 1 8.2632 4.3044 -2.5584 18 1 7.4031 4.7452 -0.3344 19 6 6.5648 -0.5867 -0.2546 20 6 6.0027 -1.8491 -0.1087 21 6 6.7947 -2.9738 -0.2292 22 6 8.1481 -2.8446 -0.4832 23 6 8.7121 -1.5894 -0.6229 24 6 7.9250 -0.4606 -0.5098 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.1348 2.1709 -0.6930 31 1 1.4793 2.4311 -1.8300 32 1 1.3369 3.4442 -0.3735 33 1 2.5913 2.9885 1.5412 34 1 2.8364 1.2470 2.0968 35 1 7.7954 1.6267 -3.0416 36 1 4.9468 -1.9506 0.0945 37 1 6.3576 -3.9554 -0.1206 38 1 8.7659 -3.7259 -0.5729 39 1 9.7692 -1.4922 -0.8216 40 1 8.3659 0.5191 -0.6195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177272677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:21 Heat of formation + Delta-G solvation = 31.209036 kcal Electronic energy + Delta-G solvation = -21583.878662 eV Core-core repulsion = 18558.069697 eV Total energy + Delta-G solvation = -3025.808965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97898 -38.19328 -36.40740 -34.95257 -31.98098 -31.75119 -29.60931 -28.93502 -27.79155 -25.23990 -23.67481 -23.36470 -21.50619 -20.85753 -19.33438 -18.48650 -17.30644 -16.30235 -15.50158 -15.20505 -14.78144 -14.46291 -13.97854 -13.85153 -13.68448 -13.19498 -12.95572 -12.84067 -12.60735 -12.20771 -11.97669 -11.63507 -11.59688 -11.49305 -11.29869 -11.22748 -11.00059 -10.80664 -10.76663 -10.51898 -10.36026 -9.99680 -9.52159 -9.22275 -9.11201 -8.72212 -7.98990 -7.76625 -6.85950 -6.28628 -4.51778 2.42555 2.58772 3.03173 3.12049 3.14008 3.56668 3.95092 4.35713 4.49864 4.76359 5.13147 5.14568 5.29810 5.45222 5.51968 5.65217 5.85014 5.88727 5.90681 5.98380 6.06495 6.09445 6.14288 6.19207 6.21885 6.25975 6.43409 6.58516 6.67557 6.73487 6.74698 6.78593 6.93449 7.03674 7.18239 7.27157 7.53677 7.64314 7.72415 7.81627 8.10053 8.46595 8.86644 9.29682 9.66926 10.49032 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.007949 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.170580 B = 3521.521247 C = 5079.732612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.104 4.104 4 C -0.119 4.119 5 C -0.154 4.154 6 C -0.147 4.147 7 H 0.127 0.873 8 C 0.523 3.477 9 O -0.562 6.562 10 N -0.381 5.381 11 C -0.362 4.362 12 H 0.093 0.907 13 C 0.054 3.946 14 N -0.842 5.842 15 Si 0.913 3.087 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.185 3.815 20 C -0.193 4.193 21 C -0.121 4.121 22 C -0.175 4.175 23 C -0.124 4.124 24 C -0.106 4.106 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.274 0.726 36 H 0.176 0.824 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.510 1.059 3.017 6.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.176 4.176 5 C -0.191 4.191 6 C -0.168 4.168 7 H 0.144 0.856 8 C 0.315 3.685 9 O -0.446 6.446 10 N -0.088 5.088 11 C -0.490 4.490 12 H 0.110 0.890 13 C -0.155 4.155 14 N -0.474 5.474 15 Si 0.738 3.262 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.189 1.189 19 C 0.088 3.912 20 C -0.213 4.213 21 C -0.140 4.140 22 C -0.194 4.194 23 C -0.143 4.143 24 C -0.127 4.127 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.192 0.808 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.756 0.639 2.840 6.450 hybrid contribution 1.039 0.909 -0.333 1.420 sum -4.717 1.549 2.507 5.562 Atomic orbital electron populations 1.21940 0.97322 1.00726 1.01035 1.21032 0.93156 0.92983 1.03841 1.21524 0.92219 0.96979 0.99712 1.21459 0.99291 0.97123 0.99691 1.23106 1.03227 1.01421 0.91389 1.22184 0.91517 0.99913 1.03185 0.85559 1.19971 0.82476 0.88629 0.77394 1.90160 1.74040 1.27078 1.53369 1.40932 1.03427 1.04998 1.59396 1.19321 1.33618 0.90586 1.05471 0.88969 1.25633 0.97785 0.98356 0.93756 1.70041 1.33694 1.38260 1.05366 0.86142 0.80238 0.81795 0.77999 1.19770 1.20577 1.18924 1.18290 0.90739 0.86640 0.95576 1.22801 1.04027 0.90657 1.03794 1.20862 0.93727 0.97660 1.01741 1.20779 0.95379 0.96446 1.06794 1.20764 0.98517 0.92687 1.02346 1.21036 0.92662 0.98914 1.00069 0.93356 0.93277 0.92895 0.91246 0.90696 0.91575 0.92324 0.92776 0.88830 0.88992 0.91569 0.80809 0.87810 0.88260 0.87857 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.92 37.16 0.33 -1.67 16 2 C -0.07 -1.22 4.37 -26.73 -0.12 -1.33 16 3 C -0.10 -1.71 2.46 -154.51 -0.38 -2.09 16 4 C -0.12 -1.62 9.49 37.16 0.35 -1.27 16 5 C -0.15 -2.51 9.53 -26.69 -0.25 -2.76 16 6 C -0.15 -2.91 5.10 -91.72 -0.47 -3.37 16 7 H 0.13 2.59 7.41 -51.93 -0.38 2.20 16 8 C 0.52 12.28 7.32 -10.98 -0.08 12.20 16 9 O -0.56 -13.37 9.56 5.56 0.05 -13.32 16 10 N -0.38 -9.61 2.62 -58.98 -0.15 -9.76 16 11 C -0.36 -8.94 7.26 -14.93 -0.11 -9.05 16 12 H 0.09 2.19 7.85 -52.49 -0.41 1.78 16 13 C 0.05 1.32 3.50 -17.48 -0.06 1.26 16 14 N -0.84 -21.90 11.37 55.49 0.63 -21.27 16 15 Si 0.91 18.66 29.56 -169.99 -5.03 13.64 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 19 C 0.18 4.69 6.05 -83.70 -0.51 4.18 16 20 C -0.19 -4.63 9.06 -39.37 -0.36 -4.98 16 21 C -0.12 -2.56 10.04 -39.61 -0.40 -2.95 16 22 C -0.17 -3.53 10.04 -39.53 -0.40 -3.93 16 23 C -0.12 -2.67 10.04 -39.61 -0.40 -3.06 16 24 C -0.11 -2.58 7.86 -39.37 -0.31 -2.89 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.64 6.45 -51.93 -0.33 0.31 16 28 H 0.07 1.32 7.47 -51.92 -0.39 0.93 16 29 H 0.07 1.36 6.83 -51.93 -0.35 1.01 16 30 H 0.07 0.79 5.59 -51.93 -0.29 0.50 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.67 7.90 -51.93 -0.41 0.26 16 33 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 34 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 35 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 36 H 0.18 4.26 4.51 -56.34 -0.25 4.01 16 37 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.13 3.29 5.14 -52.49 -0.27 3.02 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -27.15 317.63 -8.47 -35.62 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.61 Total: 12.05 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.15 Total: -21.74 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.48 Total: -31.04 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.05 Total: -13.32 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.15 -8.47 -35.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177272677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.829 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds