Wall clock time and date at job start Mon Mar 30 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47216 * 2 1 4 4 C 1.33153 * 119.99565 * 95.00164 * 3 2 1 5 5 C 1.46907 * 119.99795 * 171.67546 * 4 3 2 6 6 O 1.21657 * 120.00166 * 356.67517 * 5 4 3 7 7 N 1.34774 * 120.00031 * 176.67132 * 5 4 3 8 8 C 1.36877 * 120.00116 * 5.18349 * 7 5 4 9 9 H 1.08005 * 119.99652 * 55.81118 * 8 7 5 10 10 C 1.38998 * 120.00122 * 235.81209 * 8 7 5 11 11 N 1.31361 * 119.99903 * 7.45555 * 10 8 7 12 12 Si 1.86802 * 119.99682 * 187.45361 * 10 8 7 13 13 H 1.48494 * 109.47371 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46678 * 120.00397 * 12 10 8 15 15 H 1.48501 * 109.46913 * 239.99666 * 12 10 8 16 16 C 1.39693 * 120.00145 * 185.18395 * 7 5 4 17 17 C 1.38989 * 120.08101 * 173.11399 * 16 7 5 18 18 C 1.38078 * 119.91834 * 179.97438 * 17 16 7 19 19 C 1.38315 * 120.07733 * 359.97438 * 18 17 16 20 20 C 1.38304 * 120.16362 * 0.02562 * 19 18 17 21 21 C 1.38072 * 120.08301 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00422 * 275.00070 * 3 2 1 23 23 C 1.53003 * 109.47240 * 268.38461 * 22 3 2 24 24 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47191 * 299.99754 * 1 2 3 26 26 H 1.09002 * 109.47456 * 59.99587 * 1 2 3 27 27 H 1.09003 * 109.46735 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.46974 * 120.00300 * 2 1 3 29 29 H 1.07999 * 120.00295 * 351.67971 * 4 3 2 30 30 H 0.97003 * 119.99939 * 184.99078 * 11 10 8 31 31 H 1.08001 * 120.04025 * 359.70944 * 17 16 7 32 32 H 1.07996 * 119.95971 * 179.97438 * 18 17 16 33 33 H 1.08006 * 119.91365 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.95839 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.04233 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46787 * 28.37856 * 22 3 2 37 37 H 1.08998 * 109.47242 * 148.38467 * 22 3 2 38 38 H 1.08995 * 109.46991 * 179.97438 * 23 22 3 39 39 H 1.09001 * 109.47233 * 300.00234 * 23 22 3 40 40 H 1.09003 * 109.46769 * 59.99447 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3490 2.0149 1.1488 5 6 3.0084 3.3276 1.1395 6 8 3.3197 3.8445 0.0831 7 7 3.2684 3.9594 2.3012 8 6 3.0157 3.3336 3.4921 9 1 3.4593 2.3714 3.7012 10 6 2.1881 3.9365 4.4321 11 7 1.5328 5.0324 4.1235 12 14 2.0078 3.1884 6.1342 13 1 2.8450 1.9656 6.2287 14 1 2.4503 4.1708 7.1561 15 1 0.5852 2.8345 6.3712 16 6 3.7958 5.2529 2.2901 17 6 3.9310 5.9603 3.4788 18 6 4.4532 7.2385 3.4639 19 6 4.8421 7.8146 2.2681 20 6 4.7090 7.1136 1.0833 21 6 4.1876 5.8351 1.0904 22 6 2.1763 2.1692 -1.3001 23 6 3.5927 1.9762 -1.8455 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.1212 1.5317 2.0874 30 1 1.0127 5.4933 4.8002 31 1 3.6240 5.5125 4.4124 32 1 4.5582 7.7890 4.3871 33 1 5.2498 8.8147 2.2595 34 1 5.0141 7.5665 0.1515 35 1 4.0837 5.2884 0.1648 36 1 1.4540 1.7867 -2.0213 37 1 1.9936 3.2303 -1.1306 38 1 3.6966 2.5172 -2.7860 39 1 4.3150 2.3586 -1.1242 40 1 3.7754 0.9151 -2.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177358862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:15 Heat of formation + Delta-G solvation = 20.470021 kcal Electronic energy + Delta-G solvation = -21451.140301 eV Core-core repulsion = 18424.865657 eV Total energy + Delta-G solvation = -3026.274643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79507 -37.65256 -35.91890 -34.91702 -32.05114 -31.43150 -29.97983 -29.53101 -28.24348 -25.21304 -24.18142 -22.85275 -21.76565 -21.17951 -19.72975 -18.30544 -16.89048 -16.37028 -15.51770 -15.19984 -14.76810 -14.40325 -14.04209 -13.95640 -13.55081 -13.22268 -12.97023 -12.75248 -12.48836 -12.25321 -12.08560 -11.81124 -11.64707 -11.46562 -11.35329 -11.27943 -11.10088 -10.91235 -10.78964 -10.44463 -10.27000 -10.10082 -9.95374 -9.17208 -8.67889 -8.42556 -7.93212 -7.73325 -6.84940 -6.24618 -4.50898 1.97616 2.61155 2.71261 3.03393 3.12285 3.15453 3.93438 4.26608 4.58504 4.78311 5.14729 5.21458 5.28311 5.51512 5.57840 5.74026 5.86871 5.91444 6.01054 6.04048 6.06685 6.10595 6.18472 6.19179 6.29478 6.39098 6.42006 6.73476 6.77027 6.81755 6.86303 7.00384 7.13049 7.19617 7.25601 7.32916 7.56735 7.67445 7.76516 7.84979 8.09554 8.48390 8.86676 9.31345 9.68409 10.48851 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.008117 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.496021 B = 3448.821366 C = 5172.080161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.074 4.074 4 C -0.171 4.171 5 C 0.519 3.481 6 O -0.558 6.558 7 N -0.378 5.378 8 C -0.362 4.362 9 H 0.093 0.907 10 C 0.053 3.947 11 N -0.842 5.842 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.277 1.277 16 C 0.182 3.818 17 C -0.104 4.104 18 C -0.126 4.126 19 C -0.174 4.174 20 C -0.123 4.123 21 C -0.192 4.192 22 C -0.090 4.090 23 C -0.129 4.129 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.130 0.870 30 H 0.273 0.727 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.046 0.954 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 -5.179 -3.898 6.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 C -0.076 4.076 4 C -0.191 4.191 5 C 0.314 3.686 6 O -0.445 6.445 7 N -0.084 5.084 8 C -0.490 4.490 9 H 0.111 0.889 10 C -0.156 4.156 11 N -0.474 5.474 12 Si 0.738 3.262 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.203 1.203 16 C 0.085 3.915 17 C -0.124 4.124 18 C -0.145 4.145 19 C -0.193 4.193 20 C -0.142 4.142 21 C -0.211 4.211 22 C -0.127 4.127 23 C -0.187 4.187 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.192 0.808 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.360 -4.905 -4.310 6.539 hybrid contribution -0.364 -0.056 1.298 1.349 sum -0.004 -4.961 -3.012 5.803 Atomic orbital electron populations 1.21727 0.95058 1.01176 1.02409 1.20609 0.96071 0.93426 1.02330 1.22326 0.95375 0.94708 0.95200 1.22509 1.02276 0.95990 0.98332 1.18889 0.80116 0.86488 0.83088 1.90227 1.55226 1.67560 1.31488 1.40834 1.50554 1.11180 1.05840 1.19328 1.29860 1.06347 0.93468 0.88933 1.25644 0.93430 0.96041 1.00518 1.70030 1.26262 1.16806 1.34288 0.86079 0.78543 0.79728 0.81802 1.18804 1.20124 1.20286 1.18299 0.93073 0.86668 0.93509 1.21142 0.98584 0.93861 0.98861 1.20769 1.01123 0.95759 0.96889 1.20778 1.05778 0.99371 0.93411 1.20849 1.01361 0.95236 0.96749 1.22810 1.01503 0.96299 1.00515 1.20784 0.96879 1.02174 0.92862 1.21553 0.97348 0.99215 1.00537 0.92872 0.92256 0.92712 0.91274 0.91201 0.85226 0.91594 0.84828 0.87928 0.88337 0.87869 0.80777 0.93498 0.88298 0.93566 0.91308 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.09 -1.17 6.09 -27.89 -0.17 -1.34 16 3 C -0.07 -1.26 4.62 -101.12 -0.47 -1.72 16 4 C -0.17 -3.43 8.92 -37.85 -0.34 -3.77 16 5 C 0.52 12.19 7.39 -12.75 -0.09 12.09 16 6 O -0.56 -13.03 7.68 5.23 0.04 -12.99 16 7 N -0.38 -9.54 2.62 -60.28 -0.16 -9.70 16 8 C -0.36 -8.95 7.23 -15.02 -0.11 -9.06 16 9 H 0.09 2.19 7.73 -52.48 -0.41 1.79 16 10 C 0.05 1.28 3.57 -17.47 -0.06 1.22 16 11 N -0.84 -21.90 11.10 55.50 0.62 -21.28 16 12 Si 0.91 18.65 29.56 -169.99 -5.03 13.62 16 13 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 16 C 0.18 4.61 6.07 -83.72 -0.51 4.10 16 17 C -0.10 -2.53 7.82 -39.36 -0.31 -2.84 16 18 C -0.13 -2.73 10.04 -39.61 -0.40 -3.12 16 19 C -0.17 -3.53 10.04 -39.53 -0.40 -3.93 16 20 C -0.12 -2.60 10.04 -39.62 -0.40 -2.99 16 21 C -0.19 -4.56 9.05 -39.37 -0.36 -4.92 16 22 C -0.09 -1.52 5.34 -27.88 -0.15 -1.67 16 23 C -0.13 -2.06 9.38 37.16 0.35 -1.71 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 29 H 0.13 2.58 7.02 -52.49 -0.37 2.21 16 30 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 31 H 0.13 3.38 4.96 -52.49 -0.26 3.12 16 32 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.18 4.22 4.52 -56.28 -0.25 3.96 16 36 H 0.05 0.69 8.11 -51.93 -0.42 0.26 16 37 H 0.10 1.96 5.84 -51.93 -0.30 1.66 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 1.27 6.53 -51.93 -0.34 0.93 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -27.03 321.86 -8.42 -35.45 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.71 Total: 11.14 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.04 Total: -21.09 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.46 Total: -30.98 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.04 Total: -12.99 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.03 -8.42 -35.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177358862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.922 kcal (2) G-P(sol) polarization free energy of solvation -27.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds