Wall clock time and date at job start Mon Mar 30 2020 01:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47216 * 2 1 4 4 C 1.33153 * 119.99565 * 95.00164 * 3 2 1 5 5 C 1.46907 * 119.99795 * 171.67546 * 4 3 2 6 6 O 1.21657 * 120.00166 * 356.67517 * 5 4 3 7 7 N 1.34774 * 120.00031 * 176.67132 * 5 4 3 8 8 C 1.36877 * 120.00116 * 5.18349 * 7 5 4 9 9 H 1.08005 * 119.99652 * 55.81118 * 8 7 5 10 10 C 1.38998 * 120.00122 * 235.81209 * 8 7 5 11 11 N 1.31361 * 119.99903 * 7.45555 * 10 8 7 12 12 Si 1.86802 * 119.99682 * 187.45361 * 10 8 7 13 13 H 1.48494 * 109.47371 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46678 * 120.00397 * 12 10 8 15 15 H 1.48501 * 109.46913 * 239.99666 * 12 10 8 16 16 C 1.39693 * 120.00145 * 185.18395 * 7 5 4 17 17 C 1.38989 * 120.08101 * 173.11399 * 16 7 5 18 18 C 1.38078 * 119.91834 * 179.97438 * 17 16 7 19 19 C 1.38315 * 120.07733 * 359.97438 * 18 17 16 20 20 C 1.38304 * 120.16362 * 0.02562 * 19 18 17 21 21 C 1.38072 * 120.08301 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.00422 * 275.00070 * 3 2 1 23 23 C 1.53003 * 109.47240 * 268.38461 * 22 3 2 24 24 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47191 * 299.99754 * 1 2 3 26 26 H 1.09002 * 109.47456 * 59.99587 * 1 2 3 27 27 H 1.09003 * 109.46735 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.46974 * 120.00300 * 2 1 3 29 29 H 1.07999 * 120.00295 * 351.67971 * 4 3 2 30 30 H 0.97003 * 119.99939 * 184.99078 * 11 10 8 31 31 H 1.08001 * 120.04025 * 359.70944 * 17 16 7 32 32 H 1.07996 * 119.95971 * 179.97438 * 18 17 16 33 33 H 1.08006 * 119.91365 * 179.97438 * 19 18 17 34 34 H 1.08005 * 119.95839 * 180.02562 * 20 19 18 35 35 H 1.08006 * 120.04233 * 179.97438 * 21 20 19 36 36 H 1.09002 * 109.46787 * 28.37856 * 22 3 2 37 37 H 1.08998 * 109.47242 * 148.38467 * 22 3 2 38 38 H 1.08995 * 109.46991 * 179.97438 * 23 22 3 39 39 H 1.09001 * 109.47233 * 300.00234 * 23 22 3 40 40 H 1.09003 * 109.46769 * 59.99447 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3490 2.0149 1.1488 5 6 3.0084 3.3276 1.1395 6 8 3.3197 3.8445 0.0831 7 7 3.2684 3.9594 2.3012 8 6 3.0157 3.3336 3.4921 9 1 3.4593 2.3714 3.7012 10 6 2.1881 3.9365 4.4321 11 7 1.5328 5.0324 4.1235 12 14 2.0078 3.1884 6.1342 13 1 2.8450 1.9656 6.2287 14 1 2.4503 4.1708 7.1561 15 1 0.5852 2.8345 6.3712 16 6 3.7958 5.2529 2.2901 17 6 3.9310 5.9603 3.4788 18 6 4.4532 7.2385 3.4639 19 6 4.8421 7.8146 2.2681 20 6 4.7090 7.1136 1.0833 21 6 4.1876 5.8351 1.0904 22 6 2.1763 2.1692 -1.3001 23 6 3.5927 1.9762 -1.8455 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.1212 1.5317 2.0874 30 1 1.0127 5.4933 4.8002 31 1 3.6240 5.5125 4.4124 32 1 4.5582 7.7890 4.3871 33 1 5.2498 8.8147 2.2595 34 1 5.0141 7.5665 0.1515 35 1 4.0837 5.2884 0.1648 36 1 1.4540 1.7867 -2.0213 37 1 1.9936 3.2303 -1.1306 38 1 3.6966 2.5172 -2.7860 39 1 4.3150 2.3586 -1.1242 40 1 3.7754 0.9151 -2.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177358862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:14 Heat of formation + Delta-G solvation = 8.503905 kcal Electronic energy + Delta-G solvation = -21451.659190 eV Core-core repulsion = 18424.865657 eV Total energy + Delta-G solvation = -3026.793533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53409 -39.29608 -37.42466 -36.63018 -33.85353 -32.68865 -31.54619 -31.25249 -29.82959 -27.05886 -25.57271 -24.09507 -23.44006 -22.87464 -21.43695 -19.99071 -18.44948 -18.05677 -17.32444 -16.88444 -16.36873 -15.81411 -15.70188 -15.50098 -14.94813 -14.70661 -14.63149 -14.23068 -13.98252 -13.86114 -13.49495 -13.43195 -13.19537 -13.02744 -12.86551 -12.76707 -12.55099 -12.43082 -12.07008 -12.00047 -11.75237 -11.49573 -11.48742 -10.96139 -10.49033 -9.90558 -9.65482 -9.48702 -8.68286 -8.06276 -6.41255 0.38808 0.84345 1.05448 1.40677 1.42792 1.55535 2.22662 2.54175 2.92124 2.96782 3.42957 3.90363 3.97993 4.29056 4.33230 4.33994 4.47436 4.50304 4.55686 4.63838 4.72060 4.81137 4.88508 4.99413 5.01966 5.04404 5.07540 5.13573 5.19791 5.35311 5.39402 5.40177 5.45360 5.54475 5.71645 5.82244 5.86536 5.93824 5.99223 6.11950 6.25530 6.67500 7.01413 7.51729 7.87927 8.65703 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.008117 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.496021 B = 3448.821366 C = 5172.080161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C -0.039 4.039 4 C -0.213 4.213 5 C 0.504 3.496 6 O -0.567 6.567 7 N -0.398 5.398 8 C -0.372 4.372 9 H 0.093 0.907 10 C 0.017 3.983 11 N -0.878 5.878 12 Si 0.979 3.021 13 H -0.254 1.254 14 H -0.274 1.274 15 H -0.276 1.276 16 C 0.151 3.849 17 C -0.128 4.128 18 C -0.128 4.128 19 C -0.167 4.167 20 C -0.121 4.121 21 C -0.216 4.216 22 C -0.093 4.093 23 C -0.123 4.123 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.165 0.835 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -5.985 -4.503 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 C -0.042 4.042 4 C -0.233 4.233 5 C 0.301 3.699 6 O -0.455 6.455 7 N -0.105 5.105 8 C -0.500 4.500 9 H 0.111 0.889 10 C -0.188 4.188 11 N -0.511 5.511 12 Si 0.801 3.199 13 H -0.178 1.178 14 H -0.199 1.199 15 H -0.201 1.201 16 C 0.054 3.946 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.186 4.186 20 C -0.140 4.140 21 C -0.236 4.236 22 C -0.130 4.130 23 C -0.180 4.180 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.182 0.818 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.388 -5.722 -4.927 7.561 hybrid contribution -0.349 0.204 1.327 1.388 sum 0.039 -5.518 -3.600 6.588 Atomic orbital electron populations 1.21708 0.93820 1.02834 1.01724 1.20740 0.96948 0.90665 1.04032 1.22811 0.91167 0.96079 0.94101 1.22362 1.05957 0.95505 0.99484 1.19498 0.80090 0.87526 0.82764 1.90209 1.55662 1.68130 1.31467 1.41087 1.51404 1.11537 1.06425 1.19539 1.30011 1.06505 0.93927 0.88919 1.26384 0.92598 0.96073 1.03774 1.70148 1.27298 1.18299 1.35398 0.85091 0.78411 0.79158 0.77191 1.17773 1.19897 1.20145 1.18687 0.94149 0.87312 0.94494 1.21161 1.00381 0.95371 0.97983 1.21134 0.99935 0.94777 0.98818 1.21193 1.04319 1.00812 0.92285 1.21228 0.99953 0.94127 0.98679 1.22868 1.03092 0.97846 0.99752 1.20796 0.98418 1.00262 0.93535 1.21469 0.95600 1.00907 1.00022 0.90070 0.94071 0.92330 0.88534 0.90549 0.85713 0.91710 0.86454 0.85255 0.84205 0.84738 0.81827 0.90347 0.91756 0.92360 0.94499 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.89 71.98 0.71 -2.45 16 2 C -0.09 -2.10 6.09 29.85 0.18 -1.92 16 3 C -0.04 -1.32 4.62 -17.59 -0.08 -1.40 16 4 C -0.21 -8.87 8.92 23.40 0.21 -8.66 16 5 C 0.50 25.02 7.39 86.51 0.64 25.66 16 6 O -0.57 -27.94 7.68 -4.21 -0.03 -27.97 16 7 N -0.40 -21.16 2.62 -462.86 -1.21 -22.37 16 8 C -0.37 -19.24 7.23 84.09 0.61 -18.63 16 9 H 0.09 4.60 7.73 -2.91 -0.02 4.58 16 10 C 0.02 0.86 3.57 84.95 0.30 1.17 16 11 N -0.88 -47.42 11.10 21.67 0.24 -47.17 16 12 Si 0.98 39.02 29.56 68.60 2.03 41.05 16 13 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 14 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 15 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 16 C 0.15 7.98 6.07 38.25 0.23 8.21 16 17 C -0.13 -6.43 7.82 22.41 0.18 -6.26 16 18 C -0.13 -5.42 10.04 22.25 0.22 -5.20 16 19 C -0.17 -6.44 10.04 22.30 0.22 -6.21 16 20 C -0.12 -5.01 10.04 22.25 0.22 -4.79 16 21 C -0.22 -10.60 9.05 22.41 0.20 -10.40 16 22 C -0.09 -3.06 5.34 29.85 0.16 -2.90 16 23 C -0.12 -3.78 9.38 71.98 0.67 -3.11 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.80 8.04 -2.39 -0.02 1.78 16 29 H 0.12 5.20 7.02 -2.91 -0.02 5.18 16 30 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 31 H 0.12 6.18 4.96 -2.91 -0.01 6.17 16 32 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 33 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 34 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 35 H 0.17 8.32 4.52 -63.06 -0.29 8.04 16 36 H 0.08 2.09 8.11 -2.39 -0.02 2.07 16 37 H 0.06 2.62 5.84 -2.39 -0.01 2.60 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.37 6.53 -2.39 -0.02 1.35 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -61.94 321.86 6.46 -55.47 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.75 Total: 37.88 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 4.69 Total: -36.88 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -0.97 Total: -69.55 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.03 Total: -27.97 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -61.94 6.46 -55.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177358862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.976 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds