Wall clock time and date at job start Mon Mar 30 2020 02:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21695 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.46434 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.34804 * 119.99728 * 180.02562 * 16 14 13 18 18 C 1.47216 * 119.99727 * 180.02562 * 17 16 14 19 19 C 1.39835 * 120.16851 * 359.72266 * 18 17 16 20 20 C 1.37891 * 119.82714 * 179.81112 * 19 18 17 21 21 C 1.38407 * 120.16748 * 0.44482 * 20 19 18 22 22 C 1.50699 * 119.82603 * 179.76699 * 21 20 19 23 23 C 1.38405 * 120.34270 * 359.78249 * 21 20 19 24 24 C 1.37883 * 120.17452 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08003 * 119.99550 * 0.02562 * 16 14 13 33 33 H 1.07993 * 120.00460 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.08631 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.91768 * 180.21129 * 20 19 18 36 36 H 1.09006 * 109.46669 * 270.02036 * 22 21 20 37 37 H 1.08999 * 109.47010 * 30.01756 * 22 21 20 38 38 H 1.09001 * 109.47143 * 150.02106 * 22 21 20 39 39 H 1.07995 * 119.90847 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.08810 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0475 3.3185 2.6185 17 6 -1.1702 3.8850 2.7338 18 6 -1.5597 4.5432 3.9918 19 6 -0.6714 4.5776 5.0712 20 6 -1.0420 5.1993 6.2448 21 6 -2.2930 5.7803 6.3592 22 6 -2.6920 6.4532 7.6473 23 6 -3.1795 5.7462 5.2969 24 6 -2.8221 5.1317 4.1154 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.7374 3.3470 3.4490 33 1 -1.8598 3.8569 1.9032 34 1 0.3034 4.1207 4.9849 35 1 -0.3558 5.2297 7.0782 36 1 -3.1692 5.7260 8.3043 37 1 -1.8054 6.8575 8.1358 38 1 -3.3900 7.2626 7.4333 39 1 -4.1540 6.2014 5.3939 40 1 -3.5151 5.1056 3.2875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183807119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:58 Heat of formation + Delta-G solvation = -14.157661 kcal Electronic energy + Delta-G solvation = -19824.039907 eV Core-core repulsion = 16796.263694 eV Total energy + Delta-G solvation = -3027.776212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58734 -38.84939 -35.26871 -34.36528 -32.35314 -31.52295 -31.06057 -30.58090 -27.43742 -26.53116 -23.54668 -22.99582 -22.43720 -20.87037 -19.47351 -19.05754 -17.35322 -16.51432 -15.68359 -15.42213 -15.13948 -14.95074 -14.41106 -14.19827 -14.02600 -13.64604 -13.34819 -13.15638 -12.64117 -12.52752 -12.46739 -12.00745 -11.89134 -11.50432 -11.37331 -11.20945 -11.00450 -10.95336 -10.81170 -10.31418 -10.15926 -10.04405 -9.60259 -9.11706 -9.07121 -9.00404 -8.47998 -8.15083 -7.74546 -6.10749 -4.20220 0.60616 1.26465 2.14024 3.26354 3.31675 3.32832 3.66020 4.09632 4.13507 4.39050 4.59796 4.64270 4.80760 4.93161 5.04514 5.20480 5.24316 5.29585 5.30995 5.47655 5.53966 5.71894 5.84642 5.92840 6.13259 6.20576 6.39868 6.42051 6.49067 6.54416 6.68744 6.70079 6.83010 7.07535 7.23413 7.39731 7.48664 7.64191 7.76891 7.92794 8.20163 8.70647 8.79855 9.17530 9.47224 10.94608 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.003173 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.664142 B = 8821.919463 C = 9397.626636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.553 6.553 16 C -0.186 4.186 17 C -0.052 4.052 18 C -0.065 4.065 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.087 4.087 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.098 4.098 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 8.947 16.932 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.315 3.685 15 O -0.434 6.434 16 C -0.207 4.207 17 C -0.072 4.072 18 C -0.065 4.065 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.088 4.088 22 C -0.171 4.171 23 C -0.141 4.141 24 C -0.116 4.116 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.155 8.796 16.042 20.924 hybrid contribution 1.382 -0.079 0.267 1.410 sum -8.773 8.717 16.308 20.467 Atomic orbital electron populations 1.21841 0.98343 0.97997 1.01278 1.21929 0.92633 0.99774 1.02252 1.18793 0.94172 0.89220 0.81072 0.93248 1.21203 0.90740 1.39078 1.06297 0.92151 1.24886 0.98591 0.94820 0.95382 1.69883 1.35210 1.37554 1.09333 0.86517 0.84890 0.78301 0.77435 1.20171 1.21134 1.20196 1.46431 1.14491 1.55385 1.18490 1.18205 0.82987 0.79666 0.87629 1.90772 1.51573 1.60512 1.40526 1.23275 0.97825 1.01236 0.98351 1.22262 0.96382 0.93356 0.95176 1.19120 0.94475 0.99095 0.93853 1.21455 0.99487 0.98534 0.92636 1.20964 0.96197 0.98977 0.97837 1.20042 0.94281 0.98441 0.95987 1.20807 1.01923 0.99982 0.94423 1.20953 0.99453 1.00645 0.93067 1.21370 0.95552 0.96890 0.97791 0.94237 0.95892 0.93155 0.95055 0.88302 0.92509 0.77920 0.86000 0.84760 0.85386 0.85934 0.91169 0.91543 0.91575 0.85971 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.70 -14.74 5.02 -56.33 -0.28 -15.03 16 14 C 0.53 10.68 6.31 -12.96 -0.08 10.60 16 15 O -0.55 -13.06 13.37 5.19 0.07 -12.99 16 16 C -0.19 -2.87 9.41 -37.50 -0.35 -3.22 16 17 C -0.05 -0.74 9.46 -37.15 -0.35 -1.09 16 18 C -0.07 -0.80 5.87 -105.06 -0.62 -1.42 16 19 C -0.10 -1.14 9.41 -39.11 -0.37 -1.51 16 20 C -0.12 -1.18 9.68 -39.65 -0.38 -1.57 16 21 C -0.09 -0.81 5.89 -104.50 -0.62 -1.42 16 22 C -0.11 -0.74 10.00 36.01 0.36 -0.38 16 23 C -0.12 -1.17 9.68 -39.65 -0.38 -1.55 16 24 C -0.10 -1.06 9.80 -39.11 -0.38 -1.44 16 25 H 0.04 0.88 5.65 -51.93 -0.29 0.58 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 7.06 8.52 -40.82 -0.35 6.71 16 32 H 0.12 1.52 6.07 -52.48 -0.32 1.20 16 33 H 0.13 2.01 7.52 -52.49 -0.39 1.62 16 34 H 0.13 1.26 6.17 -52.48 -0.32 0.94 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.37 8.08 -51.93 -0.42 -0.04 16 38 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -30.63 332.37 -8.86 -39.49 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.70 Total: 7.30 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -3.56 Total: -15.20 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.34 Total: -39.26 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.63 -8.86 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.334 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds