Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21695 * 120.00167 * 359.97438 * 14 13 3 16 16 C 1.46434 * 120.00112 * 179.97438 * 14 13 3 17 17 C 1.34804 * 119.99728 * 180.02562 * 16 14 13 18 18 C 1.47216 * 119.99727 * 180.02562 * 17 16 14 19 19 C 1.39835 * 120.16851 * 359.72266 * 18 17 16 20 20 C 1.37891 * 119.82714 * 179.81112 * 19 18 17 21 21 C 1.38407 * 120.16748 * 0.44482 * 20 19 18 22 22 C 1.50699 * 119.82603 * 179.76699 * 21 20 19 23 23 C 1.38405 * 120.34270 * 359.78249 * 21 20 19 24 24 C 1.37883 * 120.17452 * 0.02562 * 23 21 20 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 32 32 H 1.08003 * 119.99550 * 0.02562 * 16 14 13 33 33 H 1.07993 * 120.00460 * 359.97438 * 17 16 14 34 34 H 1.08003 * 120.08631 * 359.97438 * 19 18 17 35 35 H 1.07994 * 119.91768 * 180.21129 * 20 19 18 36 36 H 1.09006 * 109.46669 * 270.02036 * 22 21 20 37 37 H 1.08999 * 109.47010 * 30.01756 * 22 21 20 38 38 H 1.09001 * 109.47143 * 150.02106 * 22 21 20 39 39 H 1.07995 * 119.90847 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.08810 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0475 3.3185 2.6185 17 6 -1.1702 3.8850 2.7338 18 6 -1.5597 4.5432 3.9918 19 6 -0.6714 4.5776 5.0712 20 6 -1.0420 5.1993 6.2448 21 6 -2.2930 5.7803 6.3592 22 6 -2.6920 6.4532 7.6473 23 6 -3.1795 5.7462 5.2969 24 6 -2.8221 5.1317 4.1154 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1231 1.9979 32 1 0.7374 3.3470 3.4490 33 1 -1.8598 3.8569 1.9032 34 1 0.3034 4.1207 4.9849 35 1 -0.3558 5.2297 7.0782 36 1 -3.1692 5.7260 8.3043 37 1 -1.8054 6.8575 8.1358 38 1 -3.3900 7.2626 7.4333 39 1 -4.1540 6.2014 5.3939 40 1 -3.5151 5.1056 3.2875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -31.390531 kcal Electronic energy + Delta-G solvation = -19824.787180 eV Core-core repulsion = 16796.263694 eV Total energy + Delta-G solvation = -3028.523486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76861 -40.13085 -37.04390 -35.45663 -34.28482 -32.96081 -32.11132 -31.68890 -29.12984 -27.66578 -25.22114 -24.05268 -23.60806 -22.10469 -21.26450 -20.44379 -18.86903 -17.94556 -17.22593 -16.76835 -16.35932 -16.17161 -15.99383 -15.65118 -14.87633 -14.63427 -14.61676 -14.38027 -14.14050 -13.84567 -13.51133 -13.20910 -13.16633 -13.11997 -12.91436 -12.79710 -12.65444 -12.19535 -12.16304 -12.03085 -11.76317 -11.60134 -11.07000 -11.05552 -10.74125 -10.51511 -9.88291 -9.64847 -9.01999 -8.15872 -6.33544 -0.38439 0.50134 1.08269 1.44733 1.46831 1.54590 2.36699 2.47639 2.71155 2.96195 3.13423 3.76301 3.82417 4.04993 4.07929 4.21426 4.34272 4.46647 4.48754 4.51658 4.56670 4.75823 4.82210 4.87246 4.93230 5.05724 5.06968 5.20096 5.22367 5.28334 5.34462 5.43751 5.52890 5.56930 5.62821 5.68004 5.72416 5.80040 5.95497 6.07296 6.16755 6.74321 7.02056 7.33592 7.60086 8.89499 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032450 B = 0.003173 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.664142 B = 8821.919463 C = 9397.626636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.526 3.474 15 O -0.596 6.596 16 C -0.207 4.207 17 C -0.025 4.025 18 C -0.095 4.095 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.131 4.131 24 C -0.103 4.103 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.145 0.855 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.423 9.949 20.018 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.347 5.347 14 C 0.316 3.684 15 O -0.480 6.480 16 C -0.227 4.227 17 C -0.045 4.045 18 C -0.095 4.095 19 C -0.124 4.124 20 C -0.148 4.148 21 C -0.083 4.083 22 C -0.171 4.171 23 C -0.148 4.148 24 C -0.121 4.121 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.172 0.828 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.163 0.837 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.908 9.811 19.173 23.708 hybrid contribution 1.140 -0.275 -0.596 1.315 sum -8.769 9.536 18.577 22.648 Atomic orbital electron populations 1.21676 0.97050 0.99110 1.00211 1.21780 0.93707 0.99139 1.01311 1.18381 0.93703 0.89210 0.81392 0.98496 1.21559 0.91388 1.39060 1.06792 0.91020 1.25792 1.03438 0.94342 0.94973 1.70043 1.37192 1.38295 1.09853 0.85412 0.78963 0.78448 0.77590 1.18835 1.21160 1.19681 1.46181 1.15418 1.55574 1.17575 1.18914 0.81982 0.78808 0.88743 1.90746 1.52640 1.62114 1.42544 1.23013 0.99310 1.03293 0.97082 1.22349 0.95313 0.91217 0.95623 1.19074 0.95860 1.01177 0.93425 1.21657 0.99660 0.98385 0.92711 1.21286 0.96961 0.98583 0.97996 1.20489 0.93837 0.97045 0.96908 1.20884 1.02789 1.00367 0.93093 1.21267 1.00647 1.00367 0.92551 1.21591 0.95193 0.96556 0.98802 0.93882 0.93521 0.95599 0.94027 0.90942 0.92570 0.76100 0.82826 0.86238 0.84462 0.83694 0.90103 0.90495 0.90477 0.83689 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.14 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.93 16 3 C 0.28 14.57 2.24 44.24 0.10 14.67 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.55 -29.55 8.73 25.60 0.22 -29.33 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.80 5.29 84.66 0.45 1.24 16 8 N -0.92 -53.09 11.29 21.45 0.24 -52.85 16 9 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 13 N -0.70 -29.93 5.02 -450.34 -2.26 -32.19 16 14 C 0.53 21.80 6.31 86.38 0.54 22.34 16 15 O -0.60 -29.55 13.37 -4.33 -0.06 -29.61 16 16 C -0.21 -6.30 9.41 23.62 0.22 -6.08 16 17 C -0.02 -0.71 9.46 23.84 0.23 -0.48 16 18 C -0.10 -2.23 5.87 -20.15 -0.12 -2.34 16 19 C -0.11 -2.13 9.41 22.57 0.21 -1.92 16 20 C -0.13 -2.15 9.68 22.23 0.22 -1.93 16 21 C -0.08 -1.26 5.89 -19.78 -0.12 -1.38 16 22 C -0.11 -1.05 10.00 71.24 0.71 -0.34 16 23 C -0.13 -2.13 9.68 22.23 0.22 -1.92 16 24 C -0.10 -2.09 9.80 22.57 0.22 -1.87 16 25 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.02 1.29 7.84 -2.38 -0.02 1.27 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 30 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.40 14.54 8.52 -92.71 -0.79 13.75 16 32 H 0.15 3.59 6.07 -2.91 -0.02 3.58 16 33 H 0.12 3.71 7.52 -2.91 -0.02 3.68 16 34 H 0.14 2.39 6.17 -2.91 -0.02 2.37 16 35 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 38 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -68.47 332.37 4.08 -64.39 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.25 Total: 26.22 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.88 Total: -20.40 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.02 Total: -85.04 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.06 Total: -29.61 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.47 4.08 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.996 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds