Wall clock time and date at job start Mon Mar 30 2020 02:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 H 1.08998 * 109.47289 * 55.00016 * 3 2 1 5 5 C 1.50703 * 109.46625 * 174.99759 * 3 2 1 6 6 H 1.07998 * 119.99630 * 120.00072 * 5 3 2 7 7 C 1.37880 * 120.00169 * 299.99866 * 5 3 2 8 8 N 1.31515 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99947 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47115 * 59.99969 * 9 7 5 11 11 H 1.48496 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47051 * 299.99851 * 9 7 5 13 13 N 1.46495 * 109.46954 * 294.99209 * 3 2 1 14 14 C 1.34777 * 119.99667 * 85.00739 * 13 3 2 15 15 O 1.21693 * 120.00014 * 359.97438 * 14 13 3 16 16 C 1.46432 * 120.00077 * 179.97438 * 14 13 3 17 17 C 1.34813 * 119.99999 * 179.97438 * 16 14 13 18 18 C 1.47205 * 119.99983 * 180.27347 * 17 16 14 19 19 C 1.39861 * 120.16815 * 359.72294 * 18 17 16 20 20 C 1.37866 * 119.82539 * 180.02562 * 19 18 17 21 21 C 1.38420 * 120.17101 * 359.97438 * 20 19 18 22 22 C 1.38380 * 120.34948 * 359.97438 * 21 20 19 23 23 C 1.50699 * 119.91847 * 180.02562 * 22 21 20 24 24 C 1.37920 * 120.16350 * 359.76648 * 22 21 20 25 25 H 1.09000 * 109.47566 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47496 * 300.00491 * 1 2 3 27 27 H 1.09008 * 109.46799 * 60.00210 * 1 2 3 28 28 H 1.09001 * 109.47187 * 239.99180 * 2 1 3 29 29 H 1.08999 * 109.46386 * 120.00218 * 2 1 3 30 30 H 0.97000 * 119.99647 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00601 * 265.00526 * 13 3 2 32 32 H 1.08001 * 119.99675 * 359.97438 * 16 14 13 33 33 H 1.08002 * 119.99790 * 359.97438 * 17 16 14 34 34 H 1.08000 * 120.08719 * 0.02628 * 19 18 17 35 35 H 1.07999 * 119.91351 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.83036 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.46850 * 90.00512 * 23 22 21 38 38 H 1.08996 * 109.46786 * 210.00074 * 23 22 21 39 39 H 1.08995 * 109.46872 * 330.00344 * 23 22 21 40 40 H 1.08000 * 120.08477 * 180.25088 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3365 2.1730 9 14 6.0049 0.8810 1.3819 10 1 6.4995 2.2812 1.3823 11 1 6.3977 0.2175 2.6511 12 1 6.5974 0.1470 0.2351 13 7 1.6526 2.0973 -1.2519 14 6 0.4354 2.6643 -1.3671 15 8 -0.3420 2.6319 -0.4314 16 6 0.0482 3.3194 -2.6181 17 6 -1.1696 3.8861 -2.7335 18 6 -1.5610 4.5394 -3.9933 19 6 -0.6701 4.5793 -5.0707 20 6 -1.0438 5.1935 -6.2471 21 6 -2.2972 5.7692 -6.3636 22 6 -3.1847 5.7329 -5.3025 23 6 -4.5471 6.3622 -5.4402 24 6 -2.8275 5.1175 -4.1210 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 3.8292 -0.0613 2.9499 31 1 2.2721 2.1229 -1.9978 32 1 0.7383 3.3486 -3.4484 33 1 -1.8598 3.8566 -1.9034 34 1 0.3080 4.1302 -4.9814 35 1 -0.3572 5.2247 -7.0801 36 1 -2.5845 6.2485 -7.2879 37 1 -5.2524 5.6225 -5.8190 38 1 -4.8826 6.7189 -4.4664 39 1 -4.4915 7.2004 -6.1348 40 1 -3.5226 5.0864 -3.2951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183807853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:00 Heat of formation + Delta-G solvation = -31.230926 kcal Electronic energy + Delta-G solvation = -19860.647537 eV Core-core repulsion = 16832.130973 eV Total energy + Delta-G solvation = -3028.516565 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77761 -40.13437 -37.04227 -35.33096 -34.28522 -33.15757 -32.78113 -30.85386 -28.95607 -27.67937 -25.64024 -24.52143 -22.99486 -22.26584 -21.23133 -20.14534 -18.87785 -17.94932 -17.22003 -17.16264 -16.35704 -16.18619 -15.81514 -15.69901 -14.84373 -14.65449 -14.65239 -14.37575 -14.03752 -13.86317 -13.51049 -13.18894 -13.13882 -13.11054 -12.91938 -12.86458 -12.65547 -12.19155 -12.13524 -12.01211 -11.81041 -11.60458 -11.17953 -11.06781 -10.74758 -10.51673 -9.69733 -9.63574 -9.13175 -8.15967 -6.33642 -0.38191 0.47369 1.09882 1.44760 1.46841 1.54597 2.36551 2.47245 2.70224 2.95977 3.13351 3.73386 3.82228 4.01483 4.14039 4.23219 4.37372 4.46442 4.48263 4.49554 4.56485 4.75292 4.77122 4.85932 4.95966 5.01652 5.05633 5.17114 5.22371 5.30713 5.36522 5.43759 5.54426 5.57012 5.62589 5.67280 5.71026 5.79907 5.95202 6.07740 6.16680 6.74229 7.01496 7.33478 7.59524 8.89391 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033383 B = 0.003206 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.550470 B = 8732.184551 C = 9260.430754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.699 5.699 14 C 0.525 3.475 15 O -0.596 6.596 16 C -0.203 4.203 17 C -0.028 4.028 18 C -0.083 4.083 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.098 4.098 23 C -0.113 4.113 24 C -0.113 4.113 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.048 9.874 -19.180 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.347 5.347 14 C 0.315 3.685 15 O -0.480 6.480 16 C -0.223 4.223 17 C -0.048 4.048 18 C -0.083 4.083 19 C -0.137 4.137 20 C -0.139 4.139 21 C -0.133 4.133 22 C -0.098 4.098 23 C -0.170 4.170 24 C -0.131 4.131 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.537 9.733 -18.330 23.276 hybrid contribution 1.182 -0.275 0.554 1.334 sum -9.355 9.459 -17.776 22.203 Atomic orbital electron populations 1.21679 0.97063 0.99114 1.00211 1.21781 0.93693 0.99140 1.01318 1.18379 0.93701 0.89206 0.81379 0.98490 1.21562 0.91389 1.39055 1.06806 0.91005 1.25793 1.03435 0.94332 0.94981 1.70047 1.37188 1.38294 1.09856 0.85410 0.78962 0.78448 0.77591 1.19680 1.21163 1.18835 1.46179 1.15399 1.55543 1.17585 1.18912 0.82002 0.78847 0.88727 1.90747 1.52612 1.62098 1.42541 1.23035 0.99258 1.02931 0.97092 1.22349 0.95377 0.91411 0.95633 1.19069 0.95516 1.00358 0.93339 1.21667 0.99807 0.99283 0.92920 1.21413 0.97220 0.97475 0.97809 1.21546 0.93493 0.99200 0.99060 1.20196 0.97918 0.98317 0.93383 1.20846 0.91914 1.00809 1.03426 1.21461 0.95360 0.97746 0.98528 0.93520 0.95600 0.93884 0.94019 0.90940 0.92572 0.76075 0.82721 0.86290 0.84486 0.83319 0.83463 0.90313 0.91222 0.90034 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.14 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.56 2.24 44.25 0.10 14.66 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -29.52 8.73 25.60 0.22 -29.30 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -53.05 11.29 21.45 0.24 -52.81 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 13 N -0.70 -29.84 5.02 -450.34 -2.26 -32.09 16 14 C 0.53 21.74 6.31 86.38 0.54 22.29 16 15 O -0.60 -29.50 13.36 -4.33 -0.06 -29.56 16 16 C -0.20 -6.17 9.41 23.62 0.22 -5.95 16 17 C -0.03 -0.79 9.46 23.84 0.23 -0.56 16 18 C -0.08 -1.95 5.87 -20.15 -0.12 -2.07 16 19 C -0.12 -2.37 9.41 22.57 0.21 -2.15 16 20 C -0.12 -1.93 10.03 22.22 0.22 -1.70 16 21 C -0.12 -1.71 9.69 22.35 0.22 -1.49 16 22 C -0.10 -1.65 5.87 -19.91 -0.12 -1.76 16 23 C -0.11 -1.27 10.01 71.24 0.71 -0.55 16 24 C -0.11 -2.35 9.44 22.57 0.21 -2.14 16 25 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 27 H 0.04 1.95 5.64 -2.38 -0.01 1.93 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 4.07 5.95 -2.39 -0.01 4.06 16 30 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.40 14.49 8.52 -92.71 -0.79 13.70 16 32 H 0.16 3.60 6.07 -2.91 -0.02 3.58 16 33 H 0.12 3.72 7.52 -2.91 -0.02 3.69 16 34 H 0.14 2.36 6.17 -2.91 -0.02 2.34 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 39 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 40 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.43 332.37 4.09 -64.34 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.25 Total: 26.28 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.89 Total: -20.56 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -2.02 Total: -84.91 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.06 Total: -29.56 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -68.43 4.09 -64.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183807853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.110 kcal (2) G-P(sol) polarization free energy of solvation -68.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds