Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47532 * 2 1 4 4 H 1.09006 * 109.46795 * 305.00439 * 3 2 1 5 5 C 1.50699 * 109.47095 * 185.00378 * 3 2 1 6 6 H 1.08002 * 119.99752 * 239.99956 * 5 3 2 7 7 C 1.37869 * 120.00168 * 60.00180 * 5 3 2 8 8 N 1.31522 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00028 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47567 * 89.99733 * 9 7 5 11 11 H 1.48504 * 109.47149 * 209.99634 * 9 7 5 12 12 H 1.48504 * 109.47044 * 329.99562 * 9 7 5 13 13 N 1.46500 * 109.47022 * 64.99891 * 3 2 1 14 14 C 1.34771 * 120.00098 * 275.00161 * 13 3 2 15 15 O 1.21696 * 120.00454 * 359.97438 * 14 13 3 16 16 C 1.46429 * 119.99764 * 179.97438 * 14 13 3 17 17 C 1.34807 * 119.99891 * 179.97438 * 16 14 13 18 18 C 1.47209 * 120.00074 * 180.02562 * 17 16 14 19 19 C 1.39860 * 120.16886 * 0.02568 * 18 17 16 20 20 C 1.37866 * 119.82428 * 179.97438 * 19 18 17 21 21 C 1.38427 * 120.17409 * 359.97438 * 20 19 18 22 22 C 1.38374 * 120.34191 * 359.75390 * 21 20 19 23 23 C 1.37912 * 120.17366 * 0.50658 * 22 21 20 24 24 C 1.50703 * 120.08951 * 179.77094 * 23 22 21 25 25 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46724 * 299.99964 * 1 2 3 27 27 H 1.08997 * 109.46828 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46724 * 240.00036 * 2 1 3 29 29 H 1.09006 * 109.47090 * 120.00271 * 2 1 3 30 30 H 0.96998 * 119.99654 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99823 * 95.00358 * 13 3 2 32 32 H 1.07994 * 120.00233 * 0.02562 * 16 14 13 33 33 H 1.08003 * 120.00139 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.08500 * 359.95136 * 19 18 17 35 35 H 1.08005 * 119.90988 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.82778 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.91386 * 180.24862 * 22 21 20 38 38 H 1.09002 * 109.47152 * 269.72092 * 24 23 22 39 39 H 1.09001 * 109.46980 * 149.72192 * 24 23 22 40 40 H 1.09004 * 109.47113 * 29.72173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8887 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1730 9 14 6.0050 0.8798 -1.3813 10 1 6.5539 -0.3523 -0.7600 11 1 6.3835 0.9211 -2.8167 12 1 6.5577 2.0717 -0.6890 13 7 1.6526 2.0974 1.2518 14 6 0.4354 2.6644 1.3670 15 8 -0.3417 2.6327 0.4310 16 6 0.0479 3.3186 2.6184 17 6 -1.1695 3.8861 2.7334 18 6 -1.5589 4.5443 3.9913 19 6 -0.6684 4.5833 5.0691 20 6 -1.0403 5.2020 6.2437 21 6 -2.2910 5.7841 6.3577 22 6 -3.1754 5.7545 5.2939 23 6 -2.8203 5.1348 4.1142 24 6 -3.7869 5.0992 2.9586 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0619 -2.9496 31 1 2.2721 2.1231 1.9977 32 1 0.7376 3.3471 3.4489 33 1 -1.8591 3.8580 1.9027 34 1 0.3077 4.1296 4.9816 35 1 -0.3539 5.2326 7.0770 36 1 -2.5767 6.2669 7.2805 37 1 -4.1480 6.2144 5.3891 38 1 -4.4020 4.2018 3.0269 39 1 -3.2317 5.0886 2.0207 40 1 -4.4263 5.9814 2.9925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183948125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -11.925257 kcal Electronic energy + Delta-G solvation = -20099.067913 eV Core-core repulsion = 17071.388505 eV Total energy + Delta-G solvation = -3027.679408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.65490 -38.83368 -35.19509 -33.89447 -32.88855 -32.32894 -30.96507 -29.52750 -27.21208 -26.80325 -24.29040 -22.96795 -21.84520 -20.76181 -19.45482 -19.05744 -17.40213 -16.63186 -15.79537 -15.52732 -15.09425 -14.84383 -14.42375 -14.14594 -13.96301 -13.63459 -13.24945 -13.10372 -12.65081 -12.48471 -12.31412 -12.01594 -11.94930 -11.50831 -11.25385 -11.14165 -10.97818 -10.90913 -10.81393 -10.30679 -10.25300 -10.13976 -9.61295 -9.07289 -9.00168 -8.91637 -8.48859 -8.20155 -7.75318 -6.11272 -4.20664 0.61767 1.24377 2.17056 3.24808 3.31805 3.33982 3.66553 4.08804 4.13005 4.38724 4.64059 4.71508 4.80481 4.89838 5.11214 5.19993 5.28065 5.29281 5.47688 5.53726 5.65295 5.72555 5.92143 5.98549 6.11294 6.30668 6.34331 6.41671 6.48624 6.55748 6.68594 6.70309 6.84133 7.07110 7.22933 7.39253 7.48102 7.63978 7.76391 7.92358 8.19772 8.70154 8.79523 9.16884 9.46887 10.94072 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029888 B = 0.003498 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.599949 B = 8003.685952 C = 8588.440325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.528 3.472 15 O -0.553 6.553 16 C -0.185 4.185 17 C -0.055 4.055 18 C -0.062 4.062 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.067 4.067 24 C -0.123 4.123 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.389 0.611 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 8.442 15.095 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.315 3.685 15 O -0.434 6.434 16 C -0.206 4.206 17 C -0.074 4.074 18 C -0.062 4.062 19 C -0.121 4.121 20 C -0.146 4.146 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.067 4.067 24 C -0.179 4.179 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.140 0.860 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.567 8.295 14.199 19.547 hybrid contribution 1.411 -0.059 0.399 1.468 sum -9.156 8.236 14.599 19.099 Atomic orbital electron populations 1.21841 0.98348 0.97997 1.01275 1.21934 0.92634 0.99773 1.02257 1.18799 0.94189 0.89217 0.81068 0.93237 1.21241 0.90746 1.38993 1.06285 0.92095 1.24888 0.98601 0.94835 0.95378 1.69900 1.35098 1.37595 1.09370 0.86458 0.84900 0.78427 0.77370 1.20558 1.21079 1.19868 1.46429 1.14482 1.55360 1.18496 1.18199 0.82994 0.79670 0.87616 1.90770 1.51569 1.60524 1.40518 1.23288 0.97784 1.01146 0.98360 1.22304 0.96351 0.93439 0.95336 1.18980 0.93934 0.99336 0.93993 1.21453 0.99403 0.98604 0.92669 1.21063 0.96757 0.98978 0.97774 1.21221 0.94103 0.99436 0.98575 1.20958 0.99790 1.00529 0.92968 1.20119 0.94209 0.96651 0.95749 1.20902 0.98013 1.02505 0.96483 0.95896 0.94241 0.93148 0.88289 0.95064 0.92576 0.77915 0.86007 0.84528 0.85407 0.85947 0.86153 0.85984 0.90751 0.90613 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.16 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 N -0.70 -14.69 5.02 -56.32 -0.28 -14.97 16 14 C 0.53 10.64 6.31 -12.97 -0.08 10.56 16 15 O -0.55 -12.97 13.37 5.19 0.07 -12.90 16 16 C -0.18 -2.85 9.41 -37.50 -0.35 -3.21 16 17 C -0.05 -0.78 8.89 -37.16 -0.33 -1.11 16 18 C -0.06 -0.78 5.87 -105.06 -0.62 -1.40 16 19 C -0.10 -1.16 9.41 -39.11 -0.37 -1.52 16 20 C -0.13 -1.23 10.03 -39.65 -0.40 -1.63 16 21 C -0.12 -1.05 10.04 -39.46 -0.40 -1.44 16 22 C -0.12 -1.19 9.69 -39.65 -0.38 -1.58 16 23 C -0.07 -0.75 5.92 -104.15 -0.62 -1.36 16 24 C -0.12 -1.17 9.52 36.01 0.34 -0.83 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 27 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 28 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 7.04 8.52 -40.82 -0.35 6.70 16 32 H 0.12 1.53 6.07 -52.49 -0.32 1.21 16 33 H 0.14 2.05 5.82 -52.48 -0.31 1.75 16 34 H 0.13 1.27 6.17 -52.49 -0.32 0.95 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.78 6.33 -51.93 -0.33 0.45 16 40 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -30.50 328.50 -8.76 -39.26 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.52 Total: 7.90 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.58 Total: -15.69 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.34 Total: -39.13 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.50 -8.76 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.335 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds