Wall clock time and date at job start Mon Mar 30 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47532 * 2 1 4 4 H 1.09006 * 109.46795 * 305.00439 * 3 2 1 5 5 C 1.50699 * 109.47095 * 185.00378 * 3 2 1 6 6 H 1.08002 * 119.99752 * 239.99956 * 5 3 2 7 7 C 1.37869 * 120.00168 * 60.00180 * 5 3 2 8 8 N 1.31522 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00028 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47567 * 89.99733 * 9 7 5 11 11 H 1.48504 * 109.47149 * 209.99634 * 9 7 5 12 12 H 1.48504 * 109.47044 * 329.99562 * 9 7 5 13 13 N 1.46500 * 109.47022 * 64.99891 * 3 2 1 14 14 C 1.34771 * 120.00098 * 275.00161 * 13 3 2 15 15 O 1.21696 * 120.00454 * 359.97438 * 14 13 3 16 16 C 1.46429 * 119.99764 * 179.97438 * 14 13 3 17 17 C 1.34807 * 119.99891 * 179.97438 * 16 14 13 18 18 C 1.47209 * 120.00074 * 180.02562 * 17 16 14 19 19 C 1.39860 * 120.16886 * 0.02568 * 18 17 16 20 20 C 1.37866 * 119.82428 * 179.97438 * 19 18 17 21 21 C 1.38427 * 120.17409 * 359.97438 * 20 19 18 22 22 C 1.38374 * 120.34191 * 359.75390 * 21 20 19 23 23 C 1.37912 * 120.17366 * 0.50658 * 22 21 20 24 24 C 1.50703 * 120.08951 * 179.77094 * 23 22 21 25 25 H 1.08995 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46724 * 299.99964 * 1 2 3 27 27 H 1.08997 * 109.46828 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46724 * 240.00036 * 2 1 3 29 29 H 1.09006 * 109.47090 * 120.00271 * 2 1 3 30 30 H 0.96998 * 119.99654 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99823 * 95.00358 * 13 3 2 32 32 H 1.07994 * 120.00233 * 0.02562 * 16 14 13 33 33 H 1.08003 * 120.00139 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.08500 * 359.95136 * 19 18 17 35 35 H 1.08005 * 119.90988 * 179.97438 * 20 19 18 36 36 H 1.07996 * 119.82778 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.91386 * 180.24862 * 22 21 20 38 38 H 1.09002 * 109.47152 * 269.72092 * 24 23 22 39 39 H 1.09001 * 109.46980 * 149.72192 * 24 23 22 40 40 H 1.09004 * 109.47113 * 29.72173 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8887 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1730 9 14 6.0050 0.8798 -1.3813 10 1 6.5539 -0.3523 -0.7600 11 1 6.3835 0.9211 -2.8167 12 1 6.5577 2.0717 -0.6890 13 7 1.6526 2.0974 1.2518 14 6 0.4354 2.6644 1.3670 15 8 -0.3417 2.6327 0.4310 16 6 0.0479 3.3186 2.6184 17 6 -1.1695 3.8861 2.7334 18 6 -1.5589 4.5443 3.9913 19 6 -0.6684 4.5833 5.0691 20 6 -1.0403 5.2020 6.2437 21 6 -2.2910 5.7841 6.3577 22 6 -3.1754 5.7545 5.2939 23 6 -2.8203 5.1348 4.1142 24 6 -3.7869 5.0992 2.9586 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8293 -0.0619 -2.9496 31 1 2.2721 2.1231 1.9977 32 1 0.7376 3.3471 3.4489 33 1 -1.8591 3.8580 1.9027 34 1 0.3077 4.1296 4.9816 35 1 -0.3539 5.2326 7.0770 36 1 -2.5767 6.2669 7.2805 37 1 -4.1480 6.2144 5.3891 38 1 -4.4020 4.2018 3.0269 39 1 -3.2317 5.0886 2.0207 40 1 -4.4263 5.9814 2.9925 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183948125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:10 Heat of formation + Delta-G solvation = -29.174492 kcal Electronic energy + Delta-G solvation = -20099.815896 eV Core-core repulsion = 17071.388505 eV Total energy + Delta-G solvation = -3028.427391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80746 -40.15958 -37.02308 -35.00342 -34.28646 -33.68211 -32.78819 -30.58543 -28.96226 -27.76644 -25.63204 -24.64092 -22.98084 -21.91920 -21.22588 -20.43156 -18.89040 -17.95425 -17.24962 -16.98774 -16.43631 -16.18156 -15.91916 -15.55931 -14.92050 -14.75422 -14.63579 -14.36141 -13.98685 -13.83523 -13.50328 -13.35268 -13.16621 -13.04805 -12.93352 -12.84395 -12.66563 -12.17523 -12.07829 -11.91018 -11.75889 -11.61256 -11.26844 -11.05462 -10.74292 -10.52124 -9.69377 -9.64090 -9.09632 -8.16092 -6.33674 -0.38085 0.48629 1.11436 1.44745 1.45443 1.55985 2.36613 2.48120 2.70767 2.96581 3.13297 3.76726 3.83490 3.97250 4.07719 4.25322 4.35141 4.44032 4.48503 4.56057 4.56707 4.75456 4.77012 4.78419 4.91021 5.05684 5.08710 5.13406 5.22165 5.28574 5.37846 5.43932 5.55917 5.59518 5.61335 5.62885 5.75410 5.80017 5.95361 6.08582 6.16772 6.74398 7.01741 7.33537 7.59656 8.89401 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029888 B = 0.003498 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.599949 B = 8003.685952 C = 8588.440325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.700 5.700 14 C 0.526 3.474 15 O -0.595 6.595 16 C -0.206 4.206 17 C -0.028 4.028 18 C -0.094 4.094 19 C -0.109 4.109 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.131 4.131 23 C -0.075 4.075 24 C -0.124 4.124 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.952 9.493 18.174 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.347 5.347 14 C 0.316 3.684 15 O -0.479 6.479 16 C -0.226 4.226 17 C -0.048 4.048 18 C -0.095 4.095 19 C -0.126 4.126 20 C -0.152 4.152 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.075 4.075 24 C -0.180 4.180 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.239 0.761 32 H 0.171 0.829 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.164 0.836 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.437 9.358 17.321 22.283 hybrid contribution 1.208 -0.273 -0.468 1.324 sum -9.229 9.085 16.853 21.254 Atomic orbital electron populations 1.21676 0.97044 0.99108 1.00221 1.21785 0.93716 0.99142 1.01306 1.18383 0.93697 0.89201 0.81382 0.98452 1.21588 0.91401 1.38997 1.06766 0.91040 1.25789 1.03426 0.94358 0.94972 1.70056 1.37087 1.38312 1.09896 0.85354 0.78989 0.78883 0.77154 1.19607 1.21241 1.18913 1.46178 1.15401 1.55563 1.17583 1.18893 0.82000 0.78818 0.88712 1.90744 1.52614 1.62088 1.42498 1.23028 0.99257 1.03232 0.97124 1.22402 0.95292 0.91298 0.95825 1.18976 0.95416 1.01441 0.93620 1.21668 0.99555 0.98584 0.92837 1.21410 0.97584 0.98336 0.97846 1.21668 0.93487 0.97945 0.99389 1.21290 1.01072 1.00103 0.92382 1.20372 0.93892 0.96446 0.96831 1.20935 0.97999 1.03695 0.95399 0.93533 0.93890 0.95564 0.90922 0.94060 0.92588 0.76122 0.82880 0.86011 0.84573 0.83493 0.83183 0.83580 0.90347 0.92172 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.09 5.45 30.60 0.17 -5.93 16 3 C 0.28 14.55 2.24 44.24 0.10 14.65 16 4 H 0.00 -0.15 7.58 -2.38 -0.02 -0.17 16 5 C -0.55 -29.51 8.73 25.60 0.22 -29.29 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.95 11.29 21.45 0.24 -52.71 16 9 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 13 N -0.70 -29.91 5.02 -450.33 -2.26 -32.16 16 14 C 0.53 21.81 6.31 86.38 0.54 22.35 16 15 O -0.60 -29.39 13.37 -4.34 -0.06 -29.45 16 16 C -0.21 -6.33 9.41 23.62 0.22 -6.11 16 17 C -0.03 -0.81 8.89 23.84 0.21 -0.60 16 18 C -0.09 -2.25 5.87 -20.15 -0.12 -2.36 16 19 C -0.11 -2.18 9.41 22.57 0.21 -1.97 16 20 C -0.13 -2.12 10.03 22.23 0.22 -1.90 16 21 C -0.11 -1.53 10.04 22.35 0.22 -1.30 16 22 C -0.13 -2.09 9.69 22.22 0.22 -1.88 16 23 C -0.08 -1.55 5.92 -19.56 -0.12 -1.67 16 24 C -0.12 -2.25 9.52 71.24 0.68 -1.57 16 25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.04 1.94 5.65 -2.39 -0.01 1.93 16 27 H 0.03 1.30 7.84 -2.39 -0.02 1.29 16 28 H 0.07 4.08 5.95 -2.39 -0.01 4.07 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 14.55 8.52 -92.71 -0.79 13.76 16 32 H 0.15 3.63 6.07 -2.91 -0.02 3.61 16 33 H 0.12 3.83 5.82 -2.91 -0.02 3.81 16 34 H 0.14 2.39 6.17 -2.91 -0.02 2.37 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 37 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.27 6.33 -2.39 -0.02 1.25 16 40 H 0.09 1.20 8.08 -2.38 -0.02 1.18 16 Total: -1.00 -68.38 328.50 4.06 -64.33 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.26 Total: 27.03 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.85 Total: -21.46 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -2.02 Total: -84.87 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.06 Total: -29.45 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -68.38 4.06 -64.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183948125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.151 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds