Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42905 * 109.47152 * 87.51839 * 3 2 1 5 5 C 1.35894 * 116.99946 * 179.97438 * 4 3 2 6 6 C 1.38728 * 120.05664 * 179.97438 * 5 4 3 7 7 C 1.38144 * 119.95024 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.05221 * 0.02801 * 7 6 5 9 9 C 1.50691 * 119.94328 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.47232 * 89.99850 * 9 8 7 11 11 C 1.46902 * 110.99920 * 184.82360 * 10 9 8 12 12 H 1.08999 * 109.47414 * 320.80347 * 11 10 9 13 13 C 1.50709 * 109.46988 * 200.80690 * 11 10 9 14 14 H 1.07995 * 119.99931 * 355.35581 * 13 11 10 15 15 C 1.37876 * 119.99636 * 175.36660 * 13 11 10 16 16 N 1.31512 * 120.00683 * 354.18406 * 15 13 11 17 17 Si 1.86805 * 119.99680 * 174.19013 * 15 13 11 18 18 H 1.48504 * 109.46971 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.46735 * 299.99415 * 17 15 13 20 20 H 1.48499 * 109.47413 * 59.99225 * 17 15 13 21 21 C 1.53000 * 109.47214 * 80.80597 * 11 10 9 22 22 C 1.53004 * 109.46996 * 63.89700 * 21 11 10 23 23 C 1.38272 * 120.10956 * 0.24705 * 8 7 6 24 24 C 1.38142 * 120.05533 * 359.45496 * 23 8 7 25 25 H 4.38447 * 5.44547 * 180.02562 * 4 1 2 26 26 H 1.08999 * 109.47442 * 327.51875 * 3 2 1 27 27 H 1.08996 * 109.46801 * 207.51473 * 3 2 1 28 28 H 1.08004 * 120.02755 * 0.02562 * 6 5 4 29 29 H 1.08001 * 119.97622 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47518 * 329.99691 * 9 8 7 31 31 H 1.09009 * 109.47271 * 209.99723 * 9 8 7 32 32 H 1.00894 * 111.00403 * 308.77588 * 10 9 8 33 33 H 0.97002 * 119.99241 * 354.16788 * 16 15 13 34 34 H 1.08998 * 109.46870 * 183.89298 * 21 11 10 35 35 H 1.08994 * 109.47016 * 303.90066 * 21 11 10 36 36 H 1.09004 * 109.46951 * 184.87214 * 22 21 11 37 37 H 1.09001 * 109.46960 * 304.86944 * 22 21 11 38 38 H 1.08992 * 109.47453 * 64.86828 * 22 21 11 39 39 H 1.07997 * 119.96988 * 179.70572 * 23 8 7 40 40 H 1.07995 * 120.02810 * 180.24946 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.0575 -1.3461 5 6 4.4696 -0.0640 -1.5239 6 6 5.0012 -0.1198 -2.8041 7 6 6.3710 -0.1269 -2.9824 8 6 7.2123 -0.0791 -1.8861 9 6 8.7062 -0.0875 -2.0833 10 7 9.1915 1.2934 -2.2077 11 6 10.6277 1.3210 -2.5154 12 1 11.1358 0.5411 -1.9483 13 6 11.1960 2.6656 -2.1408 14 1 10.5418 3.4487 -1.7871 15 6 12.5510 2.8959 -2.2499 16 7 13.3617 1.9113 -2.5704 17 14 13.2353 4.6067 -1.9422 18 1 14.7094 4.5897 -2.1211 19 1 12.6303 5.5622 -2.9047 20 1 12.9101 5.0280 -0.5559 21 6 10.8334 1.0794 -4.0121 22 6 10.2033 2.2262 -4.8051 23 6 6.6850 -0.0292 -0.6088 24 6 5.3158 -0.0157 -0.4256 25 1 -1.0500 0.0002 -0.0001 26 1 3.0098 -0.8661 0.5519 27 1 3.0088 0.9122 0.4747 28 1 4.3445 -0.1576 -3.6608 29 1 6.7853 -0.1699 -3.9789 30 1 8.9499 -0.6413 -2.9900 31 1 9.1831 -0.5645 -1.2270 32 1 8.6634 1.8012 -2.9014 33 1 13.0196 1.0069 -2.6472 34 1 11.9005 1.0309 -4.2290 35 1 10.3617 0.1389 -4.2965 36 1 10.2734 2.0119 -5.8716 37 1 9.1555 2.3300 -4.5234 38 1 10.7322 3.1535 -4.5854 39 1 7.3441 0.0033 0.2461 40 1 4.9045 0.0274 0.5720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184084707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = 19.976346 kcal Electronic energy + Delta-G solvation = -19898.051419 eV Core-core repulsion = 16871.755368 eV Total energy + Delta-G solvation = -3026.296051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21846 -39.28400 -38.09376 -34.91420 -34.29987 -32.81962 -32.02707 -30.79944 -28.71006 -27.69265 -25.62126 -25.16765 -23.76474 -22.16320 -21.36153 -19.42202 -19.29433 -18.81695 -17.09587 -17.03947 -16.89134 -16.19783 -15.73982 -15.49672 -15.37161 -15.09297 -14.93210 -14.44098 -14.23637 -14.07243 -13.75774 -13.57802 -13.33160 -13.06077 -12.61397 -12.44536 -12.37770 -12.07620 -11.96908 -11.86913 -11.85415 -11.63596 -11.51923 -11.15572 -10.60211 -10.38573 -9.96785 -9.22261 -8.94244 -8.47653 -6.18319 0.36658 0.41050 1.27032 1.56834 1.63483 1.74600 1.82515 2.61139 2.62101 2.74676 3.27349 3.41764 3.70031 3.82367 3.92989 3.98566 4.13880 4.27634 4.30124 4.34860 4.39704 4.42384 4.53070 4.59917 4.74111 4.76578 4.93545 4.96120 5.08581 5.13273 5.23128 5.26613 5.35574 5.44389 5.53990 5.71729 5.75418 5.99476 6.22973 6.36827 6.51520 6.56339 6.77156 6.81574 7.56847 8.87402 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031630 B = 0.003139 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.026119 B = 8917.502017 C = 9253.573738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.248 4.248 3 C 0.165 3.835 4 O -0.327 6.327 5 C 0.118 3.882 6 C -0.155 4.155 7 C -0.078 4.078 8 C -0.121 4.121 9 C 0.102 3.898 10 N -0.676 5.676 11 C 0.207 3.793 12 H -0.006 1.006 13 C -0.574 4.574 14 H 0.043 0.957 15 C -0.028 4.028 16 N -0.940 5.940 17 Si 1.107 2.893 18 H -0.288 1.288 19 H -0.272 1.272 20 H -0.277 1.277 21 C -0.145 4.145 22 C -0.120 4.120 23 C -0.068 4.068 24 C -0.204 4.204 25 H 0.258 0.742 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.030 0.970 31 H 0.061 0.939 32 H 0.334 0.666 33 H 0.257 0.743 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.042 0.958 39 H 0.129 0.871 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.225 -4.976 2.876 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.248 4.248 3 C 0.091 3.909 4 O -0.241 6.241 5 C 0.073 3.927 6 C -0.174 4.174 7 C -0.096 4.096 8 C -0.121 4.121 9 C -0.027 4.027 10 N -0.307 5.307 11 C 0.098 3.902 12 H 0.012 0.988 13 C -0.613 4.613 14 H 0.062 0.938 15 C -0.226 4.226 16 N -0.578 5.578 17 Si 0.930 3.070 18 H -0.214 1.214 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.185 4.185 22 C -0.178 4.178 23 C -0.087 4.087 24 C -0.222 4.222 25 H 0.274 0.726 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.147 0.853 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.895 -4.008 3.390 21.545 hybrid contribution -0.996 -1.404 -0.646 1.839 sum -21.891 -5.412 2.744 22.716 Atomic orbital electron populations 1.25934 0.96755 0.98617 0.94504 1.22761 0.94419 1.02849 1.04784 1.19486 0.85091 1.04134 0.82148 1.86053 1.19365 1.88988 1.29734 1.19026 0.81726 0.97360 0.94604 1.20529 0.94970 1.06484 0.95385 1.20983 0.92231 0.97510 0.98913 1.19804 0.94646 1.03586 0.94082 1.20798 0.91078 0.90913 0.99863 1.60769 1.04140 1.12347 1.53487 1.19118 0.85152 0.95695 0.90281 0.98777 1.22079 0.94452 0.98637 1.46121 0.93816 1.26937 0.94292 1.07564 0.93795 1.70904 1.38625 1.00990 1.47324 0.83055 0.75305 0.71375 0.77260 1.21382 1.19776 1.20226 1.22074 1.00007 0.97012 0.99395 1.21455 0.99732 0.98588 0.97997 1.20981 0.94759 0.96021 0.96897 1.21419 0.93604 1.08243 0.98963 0.72551 0.88001 0.88338 0.84040 0.84643 0.95148 0.92007 0.84679 0.93252 0.94205 0.94164 0.92959 0.92906 0.93890 0.85340 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 19.25 74.32 1.43 -0.44 16 2 C -0.25 -4.43 13.73 31.12 0.43 -4.00 16 3 C 0.16 2.83 5.21 70.18 0.37 3.20 16 4 O -0.33 -7.61 10.09 -92.36 -0.93 -8.54 16 5 C 0.12 2.87 6.69 22.51 0.15 3.02 16 6 C -0.16 -3.83 9.99 22.36 0.22 -3.60 16 7 C -0.08 -2.06 9.69 22.26 0.22 -1.84 16 8 C -0.12 -3.60 5.34 -19.85 -0.11 -3.70 16 9 C 0.10 3.60 5.63 85.55 0.48 4.08 16 10 N -0.68 -28.36 6.24 -499.45 -3.12 -31.48 16 11 C 0.21 10.22 1.95 44.17 0.09 10.30 16 12 H -0.01 -0.31 7.31 -2.39 -0.02 -0.33 16 13 C -0.57 -31.68 7.43 25.60 0.19 -31.49 16 14 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 15 C -0.03 -1.58 5.27 84.65 0.45 -1.13 16 16 N -0.94 -56.35 12.88 21.45 0.28 -56.08 16 17 Si 1.11 50.43 29.91 68.60 2.05 52.48 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 C -0.14 -6.57 5.46 30.60 0.17 -6.40 16 22 C -0.12 -4.86 9.38 71.98 0.68 -4.18 16 23 C -0.07 -1.85 9.69 22.25 0.22 -1.63 16 24 C -0.20 -4.69 9.04 22.37 0.20 -4.49 16 25 H 0.26 1.06 7.80 -4.42 -0.03 1.03 16 26 H 0.10 1.37 7.66 -2.39 -0.02 1.35 16 27 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 28 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.03 1.05 6.94 -2.39 -0.02 1.03 16 31 H 0.06 2.25 8.08 -2.38 -0.02 2.23 16 32 H 0.33 13.37 6.43 -89.70 -0.58 12.80 16 33 H 0.26 15.56 6.04 -92.71 -0.56 15.00 16 34 H 0.04 2.03 6.27 -2.39 -0.01 2.02 16 35 H 0.04 1.63 7.04 -2.39 -0.02 1.62 16 36 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 1.93 6.24 -2.39 -0.01 1.92 16 38 H 0.04 1.93 7.30 -2.39 -0.02 1.92 16 39 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -66.40 335.42 4.11 -62.28 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.66 Total: 23.66 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 5.17 Total: -42.33 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -2.84 Total: -87.56 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.93 Total: -8.54 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Total: -66.40 4.11 -62.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.258 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds