Wall clock time and date at job start Mon Mar 30 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47550 * 352.58988 * 3 2 1 5 5 C 1.35898 * 116.99968 * 180.02562 * 4 3 2 6 6 C 1.38734 * 120.05069 * 180.02562 * 5 4 3 7 7 C 1.38153 * 119.93820 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05698 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.94128 * 179.97438 * 8 7 6 10 10 N 1.46898 * 109.47045 * 90.00008 * 9 8 7 11 11 C 1.46900 * 110.99850 * 185.20422 * 10 9 8 12 12 H 1.08998 * 109.47249 * 325.22239 * 11 10 9 13 13 C 1.50700 * 109.46839 * 85.22130 * 11 10 9 14 14 H 1.07998 * 120.00208 * 359.72685 * 13 11 10 15 15 C 1.37881 * 119.99579 * 179.97438 * 13 11 10 16 16 N 1.31509 * 120.00079 * 359.73218 * 15 13 11 17 17 Si 1.86797 * 119.99707 * 179.72112 * 15 13 11 18 18 H 1.48502 * 109.47380 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46913 * 120.00748 * 17 15 13 20 20 H 1.48503 * 109.47569 * 240.00329 * 17 15 13 21 21 C 1.53000 * 109.47058 * 205.22234 * 11 10 9 22 22 C 1.53001 * 109.47344 * 65.64012 * 21 11 10 23 23 C 1.38264 * 120.11228 * 0.25054 * 8 7 6 24 24 C 1.38146 * 120.05547 * 359.45155 * 23 8 7 25 25 H 4.38447 * 5.44467 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46889 * 232.58589 * 3 2 1 27 27 H 1.08997 * 109.46996 * 112.59764 * 3 2 1 28 28 H 1.07989 * 120.03146 * 359.97438 * 6 5 4 29 29 H 1.07997 * 119.96885 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47016 * 329.99937 * 9 8 7 31 31 H 1.08995 * 109.46889 * 209.99903 * 9 8 7 32 32 H 1.00901 * 111.00031 * 61.24986 * 10 9 8 33 33 H 0.97003 * 120.00344 * 179.97438 * 16 15 13 34 34 H 1.09005 * 109.47186 * 185.64746 * 21 11 10 35 35 H 1.09006 * 109.46895 * 305.64239 * 21 11 10 36 36 H 1.08995 * 109.47126 * 174.41477 * 22 21 11 37 37 H 1.08999 * 109.47170 * 294.41561 * 22 21 11 38 38 H 1.08995 * 109.46661 * 54.41571 * 22 21 11 39 39 H 1.08000 * 119.97329 * 179.70402 * 23 8 7 40 40 H 1.08004 * 120.03342 * 180.25119 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1230 -1.3351 0.1738 5 6 4.4704 -1.5109 0.1972 6 6 5.0025 -2.7815 0.3620 7 6 6.3725 -2.9575 0.3861 8 6 7.2132 -1.8686 0.2467 9 6 8.7073 -2.0635 0.2739 10 7 9.1946 -2.3041 -1.0909 11 6 10.6290 -2.6209 -1.0894 12 1 11.1261 -2.0512 -0.3043 13 6 10.8177 -4.0946 -0.8370 14 1 9.9582 -4.7313 -0.6877 15 6 12.0879 -4.6291 -0.7915 16 7 13.1344 -3.8538 -0.9736 17 14 12.3221 -6.4544 -0.4708 18 1 10.9962 -7.1013 -0.3010 19 1 13.0303 -7.0721 -1.6207 20 1 13.1261 -6.6410 0.7638 21 6 11.2337 -2.2543 -2.4462 22 6 11.1683 -0.7382 -2.6409 23 6 6.6853 -0.6006 0.0880 24 6 5.3160 -0.4200 0.0571 25 1 -1.0498 -0.0005 -0.0001 26 1 3.0090 0.6252 0.8163 27 1 3.0091 0.3957 -0.9487 28 1 4.3463 -3.6321 0.4722 29 1 6.7872 -3.9463 0.5147 30 1 8.9506 -2.9198 0.9028 31 1 9.1829 -1.1696 0.6772 32 1 8.9991 -1.5154 -1.6890 33 1 14.0281 -4.2298 -0.9412 34 1 12.2731 -2.5808 -2.4810 35 1 10.6714 -2.7470 -3.2396 36 1 11.6869 -0.4672 -3.5605 37 1 10.1264 -0.4247 -2.7055 38 1 11.6451 -0.2425 -1.7953 39 1 7.3440 0.2490 -0.0159 40 1 4.9041 0.5701 -0.0709 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184084724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:24 Heat of formation + Delta-G solvation = 38.941433 kcal Electronic energy + Delta-G solvation = -19812.729309 eV Core-core repulsion = 16787.255646 eV Total energy + Delta-G solvation = -3025.473663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14911 -37.91171 -36.07570 -33.79093 -32.66707 -31.44261 -30.90554 -29.46939 -27.79268 -26.45580 -24.20262 -22.66449 -22.48707 -20.75533 -19.53368 -18.72667 -18.27374 -16.31735 -16.18275 -16.01841 -15.34433 -14.80231 -14.59533 -14.21224 -13.99214 -13.76654 -13.25419 -13.06245 -12.77415 -12.49785 -12.32479 -12.24224 -11.45830 -11.45135 -11.20324 -11.08038 -10.94026 -10.78713 -10.58587 -10.54864 -10.43272 -9.95129 -9.68653 -9.60590 -9.06856 -8.82621 -8.33715 -7.96216 -7.20182 -5.95615 -3.99664 1.51936 1.58641 2.02356 2.40955 3.32329 3.40485 3.41954 3.45611 3.93065 4.08955 4.46475 4.74271 4.95018 4.95814 5.00838 5.22872 5.33907 5.47072 5.53026 5.58801 5.68489 5.81686 6.02453 6.16186 6.17145 6.24707 6.36956 6.41479 6.50022 6.54117 6.84921 6.91397 6.98190 7.09372 7.15179 7.20706 7.40666 7.50331 7.79386 7.93475 8.30789 8.40818 8.77097 9.08627 9.65400 11.09699 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028607 B = 0.003304 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.545010 B = 8473.533932 C = 9191.610105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.196 4.196 3 C 0.172 3.828 4 O -0.314 6.314 5 C 0.114 3.886 6 C -0.149 4.149 7 C -0.058 4.058 8 C -0.095 4.095 9 C 0.105 3.895 10 N -0.680 5.680 11 C 0.218 3.782 12 H 0.002 0.998 13 C -0.491 4.491 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.126 4.126 22 C -0.150 4.150 23 C -0.079 4.079 24 C -0.210 4.210 25 H 0.224 0.776 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.023 0.977 32 H 0.317 0.683 33 H 0.258 0.742 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.619 8.994 2.161 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.196 4.196 3 C 0.098 3.902 4 O -0.229 6.229 5 C 0.069 3.931 6 C -0.168 4.168 7 C -0.076 4.076 8 C -0.096 4.096 9 C -0.024 4.024 10 N -0.312 5.312 11 C 0.111 3.889 12 H 0.019 0.981 13 C -0.530 4.530 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.213 1.213 21 C -0.164 4.164 22 C -0.207 4.207 23 C -0.098 4.098 24 C -0.229 4.229 25 H 0.241 0.759 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.734 8.171 2.173 19.647 hybrid contribution 0.498 0.199 0.247 0.591 sum -17.236 8.370 2.420 19.313 Atomic orbital electron populations 1.24992 0.95851 0.96878 1.00550 1.22375 0.93648 1.02644 1.00915 1.19227 0.84702 0.83853 1.02425 1.86075 1.20028 1.28349 1.88422 1.18885 0.81060 0.94564 0.98552 1.20416 0.95312 0.94605 1.06452 1.20956 0.91422 0.99328 0.95912 1.20066 0.96764 0.92591 1.00181 1.20773 0.88343 1.00050 0.93259 1.60718 1.20626 1.42482 1.07346 1.19187 0.80899 0.95935 0.92926 0.98081 1.21249 0.91909 0.93166 1.46664 0.91976 1.24966 0.96080 0.97882 0.95705 1.69877 0.98064 1.34795 1.50950 0.86501 0.78086 0.85543 0.77628 1.19750 1.21174 1.21275 1.21769 1.04860 0.91470 0.98313 1.21880 0.99150 0.99798 0.99908 1.20856 0.93970 0.97114 0.97873 1.21104 0.94418 0.97647 1.09683 0.75932 0.89649 0.89577 0.85515 0.84870 0.89890 0.95936 0.86577 0.93163 0.88182 0.94030 0.94394 0.94636 0.93915 0.86127 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 19.25 29.55 0.57 -0.77 16 2 C -0.20 -1.96 13.73 -37.12 -0.51 -2.47 16 3 C 0.17 1.67 5.21 34.37 0.18 1.85 16 4 O -0.31 -4.06 10.09 -19.42 -0.20 -4.26 16 5 C 0.11 1.54 6.69 -39.21 -0.26 1.28 16 6 C -0.15 -2.11 9.99 -39.43 -0.39 -2.50 16 7 C -0.06 -0.88 9.69 -39.60 -0.38 -1.27 16 8 C -0.10 -1.52 5.44 -104.60 -0.57 -2.09 16 9 C 0.11 1.95 5.58 -4.98 -0.03 1.92 16 10 N -0.68 -14.24 6.25 -109.23 -0.68 -14.92 16 11 C 0.22 5.33 2.02 -68.86 -0.14 5.20 16 12 H 0.00 0.04 7.85 -51.93 -0.41 -0.37 16 13 C -0.49 -13.37 8.55 -34.44 -0.29 -13.66 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 16 N -0.90 -25.34 11.28 55.43 0.63 -24.71 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 22 C -0.15 -2.87 9.65 37.16 0.36 -2.51 16 23 C -0.08 -1.10 9.69 -39.61 -0.38 -1.48 16 24 C -0.21 -2.62 9.04 -39.43 -0.36 -2.98 16 25 H 0.22 0.91 7.80 -54.10 -0.42 0.49 16 26 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 27 H 0.09 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.08 1.66 7.87 -51.93 -0.41 1.25 16 31 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.32 6.14 6.64 -39.29 -0.26 5.88 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.10 2.63 5.93 -51.93 -0.31 2.33 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.12 1.17 6.30 -52.48 -0.33 0.84 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -29.89 340.83 -8.37 -38.26 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.78 Total: 5.35 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.45 Total: -21.19 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.06 Total: -39.64 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.20 Total: -4.26 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.89 -8.37 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184084724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.197 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds