Wall clock time and date at job start Mon Mar 30 2020 02:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47320 * 2 1 4 4 H 1.09004 * 109.47287 * 54.72833 * 3 2 1 5 5 C 1.50693 * 109.47417 * 174.72807 * 3 2 1 6 6 H 1.07996 * 120.00460 * 120.14626 * 5 3 2 7 7 C 1.37884 * 119.99781 * 300.14689 * 5 3 2 8 8 N 1.31518 * 119.99821 * 166.70503 * 7 5 3 9 9 Si 1.86796 * 120.00038 * 346.70427 * 7 5 3 10 10 H 1.48500 * 109.47262 * 264.65210 * 9 7 5 11 11 H 1.48495 * 109.47095 * 24.65044 * 9 7 5 12 12 H 1.48500 * 109.47174 * 144.65547 * 9 7 5 13 13 N 1.46900 * 109.47349 * 294.72896 * 3 2 1 14 14 C 1.46900 * 111.00139 * 101.50509 * 13 3 2 15 15 C 1.50703 * 109.47288 * 183.01558 * 14 13 3 16 16 C 1.32967 * 119.90418 * 94.72412 * 15 14 13 17 17 C 1.47799 * 118.27490 * 181.43665 * 16 15 14 18 18 C 1.39070 * 121.47981 * 194.92907 * 17 16 15 19 19 C 1.38140 * 119.55170 * 179.25020 * 18 17 16 20 20 C 1.38419 * 120.30552 * 0.02562 * 19 18 17 21 21 C 1.38328 * 120.52509 * 0.29930 * 20 19 18 22 22 C 1.38275 * 119.81597 * 359.95210 * 21 20 19 23 23 O 1.35766 * 121.29427 * 179.34927 * 22 21 20 24 24 C 1.42715 * 117.43936 * 146.82024 * 23 22 21 25 25 H 1.08995 * 109.47298 * 186.78839 * 1 2 3 26 26 H 1.09000 * 109.47278 * 306.79129 * 1 2 3 27 27 H 1.09011 * 109.47096 * 66.78904 * 1 2 3 28 28 H 1.09009 * 109.46915 * 239.99973 * 2 1 3 29 29 H 1.08997 * 109.46726 * 120.00477 * 2 1 3 30 30 H 0.96997 * 119.99388 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99924 * 337.55069 * 13 3 2 32 32 H 1.08998 * 109.47569 * 303.01331 * 14 13 3 33 33 H 1.08999 * 109.47258 * 63.01781 * 14 13 3 34 34 H 1.07998 * 120.86773 * 1.67778 * 16 15 14 35 35 H 1.08000 * 120.22560 * 359.27795 * 18 17 16 36 36 H 1.08002 * 119.85325 * 179.97438 * 19 18 17 37 37 H 1.08009 * 119.73677 * 180.26417 * 20 19 18 38 38 H 1.08006 * 120.09087 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.20152 * 286.33640 * 24 23 22 40 40 H 1.08996 * 109.17095 * 167.00748 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9828 0.8390 5 6 3.5413 1.4445 0.1305 6 1 4.1500 1.8899 -0.6424 7 6 4.1378 0.8776 1.2369 8 7 5.4317 0.6416 1.2378 9 14 3.1084 0.4448 2.7342 10 1 3.1735 1.5556 3.7176 11 1 1.6981 0.2319 2.3206 12 1 3.6351 -0.7972 3.3549 13 7 1.6571 2.0973 -1.2580 14 6 0.4909 2.9693 -1.0638 15 6 0.0829 3.5645 -2.3868 16 6 -0.8660 2.9801 -3.1122 17 6 -1.2154 3.5762 -4.4187 18 6 -2.3811 3.2227 -5.0898 19 6 -2.6762 3.8163 -6.3017 20 6 -1.8185 4.7563 -6.8463 21 6 -0.6536 5.1089 -6.1889 22 6 -0.3424 4.5193 -4.9775 23 8 0.7991 4.8332 -4.3130 24 6 0.7558 4.8155 -2.8866 25 1 -0.3633 -1.0204 0.1215 26 1 -0.3634 0.6155 0.8230 27 1 -0.3634 0.4051 -0.9446 28 1 1.8933 -0.5139 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 5.8513 0.2432 2.0163 31 1 1.4827 1.4162 -1.9817 32 1 -0.3354 2.3860 -0.6576 33 1 0.7471 3.7692 -0.3691 34 1 -1.3711 2.0952 -2.7542 35 1 -3.0513 2.4894 -4.6660 36 1 -3.5800 3.5451 -6.8272 37 1 -2.0605 5.2178 -7.7924 38 1 0.0108 5.8429 -6.6205 39 1 0.2020 5.6856 -2.5339 40 1 1.7729 4.8558 -2.4971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184085175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:07 Heat of formation + Delta-G solvation = 7.908585 kcal Electronic energy + Delta-G solvation = -20577.227116 eV Core-core repulsion = 17550.407768 eV Total energy + Delta-G solvation = -3026.819348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64790 -37.67657 -37.02268 -34.64956 -32.31504 -31.53951 -30.43985 -30.02414 -27.57887 -25.95913 -24.73916 -22.76748 -22.47899 -21.77969 -20.06669 -18.33230 -17.96175 -16.85218 -16.36180 -16.08013 -15.13621 -15.01885 -14.86318 -14.38099 -14.02586 -13.70103 -13.45924 -13.26766 -13.14455 -12.73904 -12.52951 -12.14416 -12.08484 -11.78331 -11.68899 -11.40961 -11.10393 -10.96243 -10.76760 -10.57948 -10.28082 -10.09850 -9.92799 -9.33471 -9.25826 -8.71161 -8.41995 -7.87442 -7.38573 -6.05704 -3.98905 0.78300 1.28196 2.30788 3.25684 3.34521 3.37922 3.38414 3.76417 4.41990 4.60030 4.62040 4.66687 4.88281 5.05845 5.17721 5.20724 5.26068 5.34650 5.43537 5.50538 5.70133 5.76415 5.78907 5.82353 5.86147 5.95379 5.97170 6.09897 6.22303 6.35383 6.41956 6.48315 6.52105 6.60179 6.70897 6.78552 6.84170 7.14931 7.40156 7.73620 7.89518 8.26785 8.70822 9.11385 9.59749 11.07801 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033490 B = 0.003980 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.872345 B = 7032.753396 C = 7526.166375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.194 3.806 4 H 0.023 0.977 5 C -0.500 4.500 6 H 0.081 0.919 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.665 5.665 14 C 0.092 3.908 15 C -0.131 4.131 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.079 4.079 19 C -0.152 4.152 20 C -0.092 4.092 21 C -0.147 4.147 22 C 0.128 3.872 23 O -0.310 6.310 24 C 0.106 3.894 25 H 0.042 0.958 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 6.514 -11.210 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.195 4.195 3 C 0.085 3.915 4 H 0.041 0.959 5 C -0.538 4.538 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.534 5.534 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.172 1.172 12 H -0.214 1.214 13 N -0.295 5.295 14 C -0.037 4.037 15 C -0.132 4.132 16 C -0.137 4.137 17 C -0.119 4.119 18 C -0.097 4.097 19 C -0.170 4.170 20 C -0.110 4.110 21 C -0.165 4.165 22 C 0.083 3.917 23 O -0.224 6.224 24 C 0.031 3.969 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.083 0.917 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -16.245 7.012 -11.074 20.874 hybrid contribution -1.261 -1.189 1.224 2.122 sum -17.507 5.823 -9.850 20.914 Atomic orbital electron populations 1.21947 0.98536 1.00315 1.00318 1.22747 0.92821 1.01668 1.02282 1.19581 0.96804 0.88132 0.86949 0.95897 1.21004 0.89021 1.37141 1.06657 0.90105 1.24926 0.94729 0.95062 0.98422 1.69959 1.10326 1.43402 1.29694 0.87435 0.82291 0.78014 0.83905 1.20993 1.17183 1.21414 1.60692 1.33260 1.25481 1.10100 1.21018 0.93330 0.97191 0.92131 1.22836 0.95005 0.97595 0.97764 1.21477 0.99026 1.00332 0.92886 1.19186 0.96902 0.98763 0.97084 1.20998 0.95378 0.98771 0.94524 1.21028 1.00540 0.98980 0.96495 1.21011 0.93523 0.97122 0.99312 1.20539 0.98395 1.02025 0.95552 1.19087 0.86357 0.93053 0.93223 1.86013 1.30937 1.85121 1.20296 1.21739 1.03527 0.94692 0.76905 0.93911 0.93555 0.93742 0.92306 0.91625 0.92800 0.85249 0.94637 0.90492 0.85464 0.85629 0.85913 0.85559 0.85113 0.91663 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.63 37.16 0.32 -2.26 16 2 C -0.16 -3.23 4.37 -26.73 -0.12 -3.35 16 3 C 0.19 4.37 1.75 -68.87 -0.12 4.25 16 4 H 0.02 0.53 6.67 -51.93 -0.35 0.19 16 5 C -0.50 -13.86 9.35 -34.44 -0.32 -14.19 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.99 5.35 -17.82 -0.10 1.89 16 8 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 9 Si 0.86 20.63 25.68 -169.99 -4.37 16.26 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.25 -5.48 5.15 56.52 0.29 -5.19 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.67 -13.05 6.08 -109.23 -0.66 -13.72 16 14 C 0.09 1.48 5.22 -4.97 -0.03 1.46 16 15 C -0.13 -1.90 5.52 -101.23 -0.56 -2.46 16 16 C -0.12 -1.61 9.65 -37.50 -0.36 -1.97 16 17 C -0.12 -1.59 5.81 -104.97 -0.61 -2.20 16 18 C -0.08 -0.87 9.85 -39.31 -0.39 -1.26 16 19 C -0.15 -1.47 10.03 -39.55 -0.40 -1.87 16 20 C -0.09 -0.89 10.03 -39.48 -0.40 -1.28 16 21 C -0.15 -1.71 10.01 -39.53 -0.40 -2.11 16 22 C 0.13 1.80 6.47 -38.86 -0.25 1.55 16 23 O -0.31 -4.73 10.41 -19.01 -0.20 -4.93 16 24 C 0.11 1.48 6.96 35.95 0.25 1.73 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.04 0.67 6.72 -51.92 -0.35 0.32 16 28 H 0.06 1.22 8.03 -51.92 -0.42 0.80 16 29 H 0.07 1.45 4.10 -51.93 -0.21 1.24 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.33 6.28 7.94 -39.29 -0.31 5.97 16 32 H 0.04 0.54 5.91 -51.93 -0.31 0.24 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.13 1.56 8.04 -52.49 -0.42 1.14 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 1.82 8.11 -51.93 -0.42 1.40 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -30.65 321.10 -8.92 -39.56 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.83 Total: 6.52 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -3.47 Total: -22.06 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.11 Total: -40.20 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.37 Total: 16.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.65 -8.92 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184085175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.473 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds