Wall clock time and date at job start Mon Mar 30 2020 02:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47320 * 2 1 4 4 H 1.09004 * 109.47287 * 54.72833 * 3 2 1 5 5 C 1.50693 * 109.47417 * 174.72807 * 3 2 1 6 6 H 1.07996 * 120.00460 * 120.14626 * 5 3 2 7 7 C 1.37884 * 119.99781 * 300.14689 * 5 3 2 8 8 N 1.31518 * 119.99821 * 166.70503 * 7 5 3 9 9 Si 1.86796 * 120.00038 * 346.70427 * 7 5 3 10 10 H 1.48500 * 109.47262 * 264.65210 * 9 7 5 11 11 H 1.48495 * 109.47095 * 24.65044 * 9 7 5 12 12 H 1.48500 * 109.47174 * 144.65547 * 9 7 5 13 13 N 1.46900 * 109.47349 * 294.72896 * 3 2 1 14 14 C 1.46900 * 111.00139 * 101.50509 * 13 3 2 15 15 C 1.50703 * 109.47288 * 183.01558 * 14 13 3 16 16 C 1.32967 * 119.90418 * 94.72412 * 15 14 13 17 17 C 1.47799 * 118.27490 * 181.43665 * 16 15 14 18 18 C 1.39070 * 121.47981 * 194.92907 * 17 16 15 19 19 C 1.38140 * 119.55170 * 179.25020 * 18 17 16 20 20 C 1.38419 * 120.30552 * 0.02562 * 19 18 17 21 21 C 1.38328 * 120.52509 * 0.29930 * 20 19 18 22 22 C 1.38275 * 119.81597 * 359.95210 * 21 20 19 23 23 O 1.35766 * 121.29427 * 179.34927 * 22 21 20 24 24 C 1.42715 * 117.43936 * 146.82024 * 23 22 21 25 25 H 1.08995 * 109.47298 * 186.78839 * 1 2 3 26 26 H 1.09000 * 109.47278 * 306.79129 * 1 2 3 27 27 H 1.09011 * 109.47096 * 66.78904 * 1 2 3 28 28 H 1.09009 * 109.46915 * 239.99973 * 2 1 3 29 29 H 1.08997 * 109.46726 * 120.00477 * 2 1 3 30 30 H 0.96997 * 119.99388 * 179.97438 * 8 7 5 31 31 H 1.00903 * 110.99924 * 337.55069 * 13 3 2 32 32 H 1.08998 * 109.47569 * 303.01331 * 14 13 3 33 33 H 1.08999 * 109.47258 * 63.01781 * 14 13 3 34 34 H 1.07998 * 120.86773 * 1.67778 * 16 15 14 35 35 H 1.08000 * 120.22560 * 359.27795 * 18 17 16 36 36 H 1.08002 * 119.85325 * 179.97438 * 19 18 17 37 37 H 1.08009 * 119.73677 * 180.26417 * 20 19 18 38 38 H 1.08006 * 120.09087 * 179.97438 * 21 20 19 39 39 H 1.09002 * 109.20152 * 286.33640 * 24 23 22 40 40 H 1.08996 * 109.17095 * 167.00748 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9828 0.8390 5 6 3.5413 1.4445 0.1305 6 1 4.1500 1.8899 -0.6424 7 6 4.1378 0.8776 1.2369 8 7 5.4317 0.6416 1.2378 9 14 3.1084 0.4448 2.7342 10 1 3.1735 1.5556 3.7176 11 1 1.6981 0.2319 2.3206 12 1 3.6351 -0.7972 3.3549 13 7 1.6571 2.0973 -1.2580 14 6 0.4909 2.9693 -1.0638 15 6 0.0829 3.5645 -2.3868 16 6 -0.8660 2.9801 -3.1122 17 6 -1.2154 3.5762 -4.4187 18 6 -2.3811 3.2227 -5.0898 19 6 -2.6762 3.8163 -6.3017 20 6 -1.8185 4.7563 -6.8463 21 6 -0.6536 5.1089 -6.1889 22 6 -0.3424 4.5193 -4.9775 23 8 0.7991 4.8332 -4.3130 24 6 0.7558 4.8155 -2.8866 25 1 -0.3633 -1.0204 0.1215 26 1 -0.3634 0.6155 0.8230 27 1 -0.3634 0.4051 -0.9446 28 1 1.8933 -0.5139 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 5.8513 0.2432 2.0163 31 1 1.4827 1.4162 -1.9817 32 1 -0.3354 2.3860 -0.6576 33 1 0.7471 3.7692 -0.3691 34 1 -1.3711 2.0952 -2.7542 35 1 -3.0513 2.4894 -4.6660 36 1 -3.5800 3.5451 -6.8272 37 1 -2.0605 5.2178 -7.7924 38 1 0.0108 5.8429 -6.6205 39 1 0.2020 5.6856 -2.5339 40 1 1.7729 4.8558 -2.4971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184085175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:07 Heat of formation + Delta-G solvation = -11.919457 kcal Electronic energy + Delta-G solvation = -20578.086925 eV Core-core repulsion = 17550.407768 eV Total energy + Delta-G solvation = -3027.679156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62147 -38.86959 -38.27685 -35.92835 -34.24841 -32.85364 -31.31522 -31.20271 -29.29332 -27.00022 -26.14390 -24.17863 -23.56142 -22.84759 -21.80986 -19.39850 -19.00645 -18.65151 -17.48696 -17.20651 -16.80284 -16.31254 -15.85831 -15.75520 -15.32537 -14.92086 -14.70608 -14.53421 -14.43487 -14.17098 -13.61022 -13.57994 -13.37712 -13.05384 -13.03739 -12.63196 -12.42625 -12.40023 -12.36676 -12.03075 -11.71072 -11.44140 -11.22175 -11.12102 -10.96427 -10.54475 -9.59090 -9.00532 -8.79993 -8.25337 -6.23715 -0.14817 0.42776 1.33630 1.34484 1.39118 1.47278 2.37435 2.40497 2.89353 3.07712 3.49971 3.57665 3.77666 3.81436 4.14017 4.19647 4.27431 4.36323 4.37957 4.41070 4.45346 4.49740 4.54234 4.60307 4.70496 4.83272 4.84417 4.98938 5.07409 5.15650 5.18777 5.20513 5.36466 5.47353 5.50750 5.57704 5.68271 5.74081 5.90725 6.06047 6.42053 6.69491 6.76929 6.82915 7.39978 8.92391 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033490 B = 0.003980 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.872345 B = 7032.753396 C = 7526.166375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C 0.200 3.800 4 H 0.027 0.973 5 C -0.507 4.507 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.926 3.074 10 H -0.283 1.283 11 H -0.211 1.211 12 H -0.289 1.289 13 N -0.681 5.681 14 C 0.101 3.899 15 C -0.153 4.153 16 C -0.102 4.102 17 C -0.146 4.146 18 C -0.079 4.079 19 C -0.149 4.149 20 C -0.084 4.084 21 C -0.159 4.159 22 C 0.096 3.904 23 O -0.332 6.332 24 C 0.106 3.894 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.333 0.667 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.080 0.920 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.342 6.038 -11.892 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C 0.091 3.909 4 H 0.044 0.956 5 C -0.546 4.546 6 H 0.046 0.954 7 C -0.187 4.187 8 N -0.591 5.591 9 Si 0.751 3.249 10 H -0.210 1.210 11 H -0.134 1.134 12 H -0.216 1.216 13 N -0.311 5.311 14 C -0.028 4.028 15 C -0.154 4.154 16 C -0.121 4.121 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.167 4.167 20 C -0.102 4.102 21 C -0.178 4.178 22 C 0.051 3.949 23 O -0.247 6.247 24 C 0.032 3.968 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.552 6.550 -11.782 24.578 hybrid contribution 0.063 -0.967 1.190 1.535 sum -20.489 5.583 -10.592 23.731 Atomic orbital electron populations 1.21858 0.94789 1.02053 1.01580 1.22590 0.96102 0.99403 1.01243 1.19344 0.93205 0.89981 0.88359 0.95561 1.21336 0.91948 1.36054 1.05250 0.95424 1.25843 0.95896 0.95134 1.01868 1.70130 1.12764 1.45383 1.30823 0.86305 0.82311 0.77369 0.78946 1.20954 1.13376 1.21553 1.60465 1.36085 1.25650 1.08939 1.20936 0.92266 0.96391 0.93177 1.22644 0.96587 0.98489 0.97691 1.21732 0.97836 0.99968 0.92586 1.19361 0.98159 0.99663 0.97473 1.21348 0.94632 0.98834 0.94827 1.21476 1.01363 0.97919 0.95903 1.21452 0.92242 0.96426 1.00035 1.20838 0.99525 1.02321 0.95084 1.19498 0.86558 0.94469 0.94334 1.85958 1.32362 1.85648 1.20720 1.21674 1.02872 0.95488 0.76811 0.91804 0.92862 0.92105 0.93140 0.93022 0.92816 0.84946 0.92902 0.91094 0.83805 0.83413 0.82618 0.82316 0.84380 0.90249 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 8.63 71.98 0.62 -3.68 16 2 C -0.15 -6.11 4.37 30.59 0.13 -5.98 16 3 C 0.20 8.98 1.75 44.16 0.08 9.05 16 4 H 0.03 1.18 6.67 -2.39 -0.02 1.16 16 5 C -0.51 -29.27 9.35 25.60 0.24 -29.04 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.54 5.35 84.66 0.45 0.99 16 8 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 9 Si 0.93 42.86 25.68 68.60 1.76 44.62 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.21 -8.48 5.15 99.48 0.51 -7.97 16 12 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.68 -26.85 6.08 -499.48 -3.04 -29.89 16 14 C 0.10 3.14 5.22 85.56 0.45 3.59 16 15 C -0.15 -4.38 5.52 -17.66 -0.10 -4.47 16 16 C -0.10 -2.61 9.65 23.63 0.23 -2.38 16 17 C -0.15 -3.66 5.81 -20.09 -0.12 -3.78 16 18 C -0.08 -1.48 9.85 22.45 0.22 -1.26 16 19 C -0.15 -2.27 10.03 22.29 0.22 -2.05 16 20 C -0.08 -1.35 10.03 22.33 0.22 -1.12 16 21 C -0.16 -3.49 10.01 22.30 0.22 -3.27 16 22 C 0.10 2.65 6.47 22.74 0.15 2.80 16 23 O -0.33 -10.45 10.41 -90.93 -0.95 -11.40 16 24 C 0.11 3.06 6.96 71.20 0.50 3.55 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 27 H 0.06 1.60 6.72 -2.38 -0.02 1.58 16 28 H 0.05 2.05 8.03 -2.38 -0.02 2.03 16 29 H 0.05 2.17 4.10 -2.39 -0.01 2.16 16 30 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.33 12.63 7.94 -89.69 -0.71 11.92 16 32 H 0.05 1.47 5.91 -2.39 -0.01 1.46 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.14 3.08 8.04 -2.91 -0.02 3.06 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 3.44 8.11 -2.39 -0.02 3.42 16 Total: -1.00 -70.24 321.10 1.73 -68.52 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.13 Total: 25.29 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.52 Total: -37.05 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.74 Total: -89.98 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.95 Total: -11.40 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.76 Total: 44.62 kcal Total: -70.24 1.73 -68.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184085175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.599 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds